Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005139.1

Orthogroup ID

OG0015111

Physical Location & Seq

Genomic Coordinates Forward (+)

10027 .. 11421

Gene Structure 1395 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005139.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1395 bp

atgatcaagctttgtagaatccaactacccaaagccaccagaatttcagaccttctcaaccgaagctgcctgactacgaaaactgctggaaatttggatgtacaatctcctccaagtatcccggacccggaaacactagcaacccagttgtccaattgcactagtttatctgaactgaaccaaatctatgcccacattatcagaacccaattcctacgtctccacccagccccatttcactggaacaatatcataaggtcatacaccagacgcgatgctccttccaagtcgctctttgtttacgtttccatgtcacgcgccggtgttttacccgactgctacaccatccccattgttttgaaaacactgtgtcagctttttgctgtggggatcggcaggcagcttcattctgtggctgtgaggattgggctcgactcaaatgagttctgtgagagtgggtttattaacttgtattccaaggcgggagagtttgagaatgcacggaacgtgttcgatcaaaaccctgagagaaagctgggctcttggaatgccctcattgcggggctttcgcaaggcgggcgtgctagggaagctgtagagatgtttatagagcttaggaaatgcgggttactgccggatgatgtgaccatggttagtgtcacgtcagcttgtggtggtctgggtgacttggggttggctcttcagttgcataagtgtgtttatcaagctgaaatcgttgcggagaaatcggatgtgctgatgttgaattcgcttgttgatatgtatgggaaatgtgggaggatggacttggctcacagggtgttttcgaggatggagcaacagaatgtgtcgtcgtggacgtcgatgattgtggggtatgggatgcacgggcatgtggatgaggcgctggaatgctttcggtgcatgagggaggcgggagtgaggccgaaccatgtgacctttgttggggtgctcagtgcatgtgttcatggggggacagtccaagagggaagatattactttgaaatgatgaacaaggattatgggataaaccctcgcttgcagcattatggatgcatggtggatcttcttggcagagcggggttgcttgaggaggcgaggaaaatggtggaagacatgccgattaaagcaaattcggcagtctggggctgcctgatgggagcctgtgagaaatatgggaatgtgaagatgggggagtgggtggctaagcatttgcaagaactagagccatggactgatggggcttttgtggttttatctaatatctatgccagtaggggtttatggaaagaggttgagaggctaagacggattatgcaccagagaaagcttgctaaggttcctggttatagcttggcaggaagtgcagattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

464

Amino Acids

51.75

Weight (kDa)

8.4

Isoelectric Point (pI)

43.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77170
fragaria_vesca	FvH4_7g33970
malus_domestica	MD01G1235900.v1.1
prunus_persica	Prupe.2G326000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0384201
rosa_laevigata	RLG00000026060
rosa_multiflora	Rmu_co8317187.1_g000001 Rmu_sc0005139.1_g000005 Rmu_sc0014578.1_g000005
rosa_roxburghii	Rroxscaffold_4G00276860
rosa_rugosa	Rorug01G0445700
rosa_samantha	Rh1AG471200 Rh1BG429000 Rh1CG441600 Rh1DG461700
rosa_wichuraiana	Rw1G040130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	863
AccBSI	CCGCTC	1 cut(s)	1100
AccII	CGCG	2 cut(s)	273, 318
AciI	CCGC	7 cut(s)	482, 560, 576, 624, 740, 935, 1100
AclWI	GGATC	2 cut(s)	398, 1092
AcsI	RAATTY	4 cut(s)	42, 91, 766, 1153
AcuI	CTGAAG	1 cut(s)	686
AcyI	GRCGYC	1 cut(s)	860
AdeI	CACNNNGTG	1 cut(s)	820
AfaI	GTAC	1 cut(s)	102
AfiI	CCNNNNNNNGG	3 cut(s)	127, 559, 966
AflIII	ACRYGT	1 cut(s)	507
AgsI	TTSAA	3 cut(s)	361, 766, 1025
AhlI	ACTAGT	1 cut(s)	161
AjiI	CACGTC	1 cut(s)	663
AjnI	CCWGG	1 cut(s)	1363
Alw21I	GWGCWC	1 cut(s)	975
Alw26I	GTCTC	1 cut(s)	224
AlwI	GGATC	2 cut(s)	398, 1092
AoxI	GGCC	1 cut(s)	944
ApeKI	GCWGC	4 cut(s)	66, 400, 1063, 1170
ApoI	RAATTY	4 cut(s)	42, 91, 766, 1153
Asp700I	GAANNNNTTC	2 cut(s)	509, 915
AspLEI	GCGC	2 cut(s)	320, 907
AspS9I	GGNCC	1 cut(s)	124
AsuC2I	CCSGG	2 cut(s)	122, 128
AsuHPI	GGTGA	1 cut(s)	695
AvaII	GGWCC	1 cut(s)	124
BanII	GRGCYC	2 cut(s)	432, 542
BbsI	GAAGAC	1 cut(s)	1140
Bbv12I	GWGCWC	1 cut(s)	975
BbvI	GCAGC	4 cut(s)	53, 412, 1075, 1157
BccI	CCATC	6 cut(s)	353, 796, 826, 1171, 1204, 1253
BciT130I	CCWGG	1 cut(s)	1365
BciVI	GTATCC	1 cut(s)	128
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	2 cut(s)	122, 128
BcoDI	GTCTC	1 cut(s)	224
BcuI	ACTAGT	1 cut(s)	161
BfaI	CTAG	4 cut(s)	137, 162, 585, 1244
BfmI	CTRYAG	1 cut(s)	594
BfoI	RGCGCY	1 cut(s)	908
BfuI	GTATCC	1 cut(s)	128
BisI	GCNGC	4 cut(s)	67, 401, 1064, 1171
BlpI	GCTNAGC	1 cut(s)	1227
BlsI	GCNGC	4 cut(s)	68, 402, 1065, 1172
Bme1390I	CCNGG	3 cut(s)	122, 128, 1365
Bme18I	GGWCC	1 cut(s)	124
BmgBI	CACGTC	1 cut(s)	663
BmgT120I	GGNCC	1 cut(s)	124
BmiI	GGNNCC	3 cut(s)	126, 1183, 1362
BmrFI	CCNGG	3 cut(s)	122, 128, 1365
BmrI	ACTGGG	1 cut(s)	139
BmsI	GCATC	3 cut(s)	265, 873, 1064
BmuI	ACTGGG	1 cut(s)	139
BpiI	GAAGAC	1 cut(s)	1140
Bpu10I	CCTNAGC	2 cut(s)	614, 1356
Bpu1102I	GCTNAGC	1 cut(s)	1227
BpuEI	CTTGAG	1 cut(s)	1130
BpuMI	CCSGG	2 cut(s)	122, 128
BsaHI	GRCGYC	1 cut(s)	860
BsaJI	CCNNGG	3 cut(s)	477, 648, 1250
Bsc4I	CCNNNNNNNGG	3 cut(s)	127, 559, 966
Bse118I	RCCGGY	1 cut(s)	320
Bse1I	ACTGG	3 cut(s)	145, 245, 1293
Bse3DI	GCAATG	1 cut(s)	555
BseBI	CCWGG	1 cut(s)	1365
BseDI	CCNNGG	3 cut(s)	477, 648, 1250
BseGI	GGATG	9 cut(s)	103, 345, 643, 757, 807, 837, 888, 904, 1079
BseLI	CCNNNNNNNGG	3 cut(s)	127, 559, 966
BseMI	GCAATG	1 cut(s)	555
BseMII	CTCAG	2 cut(s)	516, 988
BseNI	ACTGG	3 cut(s)	145, 245, 1293
BseRI	GAGGAG	2 cut(s)	99, 1127
BseXI	GCAGC	4 cut(s)	53, 412, 1075, 1157
BseYI	CCCAGC	2 cut(s)	226, 535
Bsh1236I	CGCG	2 cut(s)	273, 318
BshFI	GGCC	1 cut(s)	946
BsiHKAI	GWGCWC	1 cut(s)	975
BsiSI	CCGG	4 cut(s)	122, 128, 321, 635
BslFI	GGGAC	1 cut(s)	1009
BslI	CCNNNNNNNGG	3 cut(s)	127, 559, 966
BsmAI	GTCTC	1 cut(s)	224
BsmBI	CGTCTC	1 cut(s)	224
BsmFI	GGGAC	1 cut(s)	1009
BsmI	GAATGC	3 cut(s)	502, 553, 917
BsnI	GGCC	1 cut(s)	946
Bsp1286I	GDGCHC	3 cut(s)	432, 542, 975
Bsp1407I	TGTACA	1 cut(s)	100
Bsp143I	GATC	4 cut(s)	3, 390, 514, 1084
Bsp1720I	GCTNAGC	1 cut(s)	1227
Bsp19I	CCATGG	2 cut(s)	648, 1250
BspACI	CCGC	7 cut(s)	482, 560, 576, 624, 740, 935, 1100
BspANI	GGCC	1 cut(s)	946
BspCNI	CTCAG	2 cut(s)	517, 987
BspFNI	CGCG	2 cut(s)	273, 318
BspLI	GGNNCC	3 cut(s)	126, 1183, 1362
BspPI	GGATC	2 cut(s)	398, 1092
BspQI	GCTCTTC	1 cut(s)	705
BsrBI	CCGCTC	1 cut(s)	1100
BsrDI	GCAATG	1 cut(s)	555
BsrFI	RCCGGY	1 cut(s)	320
BsrGI	TGTACA	1 cut(s)	100
BsrI	ACTGG	3 cut(s)	145, 245, 1293
BssAI	RCCGGY	1 cut(s)	320
BssECI	CCNNGG	3 cut(s)	477, 648, 1250
BssMI	GATC	4 cut(s)	3, 390, 514, 1084
BssNI	GRCGYC	1 cut(s)	860
BssT1I	CCWWGG	3 cut(s)	477, 648, 1250
Bst2UI	CCWGG	1 cut(s)	1365
Bst4CI	ACNGT	2 cut(s)	369, 1000
Bst6I	CTCTTC	1 cut(s)	705
BstACI	GRCGYC	1 cut(s)	860
BstAPI	GCANNNNNTGC	1 cut(s)	1385
BstAUI	TGTACA	1 cut(s)	100
BstC8I	GCNNGC	5 cut(s)	398, 578, 582, 1061, 1353
BstDEI	CTNAG	6 cut(s)	525, 614, 974, 1227, 1325, 1356
BstDSI	CCRYGG	2 cut(s)	648, 1250
BstF5I	GGATG	9 cut(s)	103, 345, 643, 757, 807, 837, 888, 904, 1079
BstFNI	CGCG	2 cut(s)	273, 318
BstH2I	RGCGCY	1 cut(s)	908
BstHHI	GCGC	2 cut(s)	320, 907
BstKTI	GATC	4 cut(s)	6, 393, 517, 1087
BstMAI	GTCTC	1 cut(s)	224
BstMBI	GATC	4 cut(s)	3, 390, 514, 1084
BstMWI	GCNNNNNNNGC	6 cut(s)	557, 577, 590, 921, 1157, 1385
BstNI	CCWGG	1 cut(s)	1365
BstNSI	RCATGY	3 cut(s)	896, 984, 1141
BstSCI	CCNGG	3 cut(s)	120, 126, 1363
BstSFI	CTRYAG	1 cut(s)	594
BstUI	CGCG	2 cut(s)	273, 318
BstV1I	GCAGC	4 cut(s)	53, 412, 1075, 1157
BstV2I	GAAGAC	1 cut(s)	1140
BstX2I	RGATCY	1 cut(s)	1084
BstXI	CCANNNNNNTGG	1 cut(s)	240
BstYI	RGATCY	1 cut(s)	1084
BsuI	GTATCC	1 cut(s)	128
BsuRI	GGCC	1 cut(s)	946
BtgI	CCRYGG	2 cut(s)	648, 1250
BtgZI	GCGATG	1 cut(s)	288
BtrI	CACGTC	1 cut(s)	663
BtsCI	GGATG	9 cut(s)	103, 345, 643, 757, 807, 837, 888, 904, 1079
BtsIMutI	CAGTG	3 cut(s)	238, 365, 982
Cac8I	GCNNGC	5 cut(s)	398, 578, 582, 1061, 1353
CfoI	GCGC	2 cut(s)	320, 907
Cfr10I	RCCGGY	1 cut(s)	320
Cfr13I	GGNCC	1 cut(s)	124
CseI	GACGC	1 cut(s)	279
Csp6I	GTAC	1 cut(s)	101
CviQI	GTAC	1 cut(s)	101
DdeI	CTNAG	6 cut(s)	525, 614, 974, 1227, 1325, 1356
DpnI	GATC	4 cut(s)	5, 392, 516, 1086
DpnII	GATC	4 cut(s)	3, 390, 514, 1084
DraIII	CACNNNGTG	1 cut(s)	820
Eam1104I	CTCTTC	1 cut(s)	705
EarI	CTCTTC	1 cut(s)	705
Eco130I	CCWWGG	3 cut(s)	477, 648, 1250
Eco24I	GRGCYC	2 cut(s)	432, 542
Eco47I	GGWCC	1 cut(s)	124
Eco57I	CTGAAG	1 cut(s)	686
EcoRI	GAATTC	1 cut(s)	766
EcoRII	CCWGG	1 cut(s)	1363
EcoT14I	CCWWGG	3 cut(s)	477, 648, 1250
EcoT22I	ATGCAT	1 cut(s)	1079
EcoT38I	GRGCYC	2 cut(s)	432, 542
ErhI	CCWWGG	3 cut(s)	477, 648, 1250
Esp3I	CGTCTC	1 cut(s)	224
FalI	AAGNNNNNCTT	2 cut(s)	278, 310
FaqI	GGGAC	1 cut(s)	1009
FauI	CCCGC	6 cut(s)	475, 553, 569, 617, 928, 1093
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	4 cut(s)	67, 401, 1064, 1171
FokI	GGATG	9 cut(s)	110, 332, 650, 764, 814, 844, 895, 911, 1086
FriOI	GRGCYC	2 cut(s)	432, 542
Fsp4HI	GCNGC	4 cut(s)	67, 401, 1064, 1171
FspBI	CTAG	4 cut(s)	137, 162, 585, 1244
GlaI	GCGC	2 cut(s)	319, 906
GluI	GCNGC	4 cut(s)	67, 401, 1064, 1171
GsaI	CCCAGC	2 cut(s)	230, 539
HaeII	RGCGCY	1 cut(s)	908
HaeIII	GGCC	1 cut(s)	946
HapII	CCGG	4 cut(s)	122, 128, 321, 635
HgaI	GACGC	1 cut(s)	279
HhaI	GCGC	2 cut(s)	320, 907
Hin1I	GRCGYC	1 cut(s)	860
Hin6I	GCGC	2 cut(s)	318, 905
HinP1I	GCGC	2 cut(s)	318, 905
HindIII	AAGCTT	2 cut(s)	8, 1349
HinfI	GANTC	2 cut(s)	18, 434
HpaII	CCGG	4 cut(s)	122, 128, 321, 635
HphI	GGTGA	1 cut(s)	695
Hpy166II	GTNNAC	2 cut(s)	301, 858
Hpy188I	TCNGA	4 cut(s)	49, 172, 203, 751
Hpy8I	GTNNAC	2 cut(s)	301, 858
Hpy99I	CGWCG	2 cut(s)	856, 865
HpyAV	CCTTC	2 cut(s)	62, 291
HpyCH4III	ACNGT	2 cut(s)	369, 1000
HpyCH4IV	ACGT	5 cut(s)	217, 303, 507, 662, 860
HpyF10VI	GCNNNNNNNGC	6 cut(s)	557, 577, 590, 921, 1157, 1385
HpyF3I	CTNAG	6 cut(s)	525, 614, 974, 1227, 1325, 1356
HpySE526I	ACGT	5 cut(s)	217, 303, 507, 662, 860
Hsp92I	GRCGYC	1 cut(s)	860
HspAI	GCGC	2 cut(s)	318, 905
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	4 cut(s)	3, 390, 514, 1084
LguI	GCTCTTC	1 cut(s)	705
LmnI	GCTCC	3 cut(s)	283, 835, 1181
Lsp1109I	GCAGC	4 cut(s)	53, 412, 1075, 1157
LweI	GCATC	3 cut(s)	265, 873, 1064
MaeI	CTAG	4 cut(s)	137, 162, 585, 1244
MaeII	ACGT	5 cut(s)	217, 303, 507, 662, 860
MaeIII	GTNAC	6 cut(s)	312, 627, 643, 658, 683, 955
MalI	GATC	4 cut(s)	5, 392, 516, 1086
MbiI	CCGCTC	1 cut(s)	1100
MboI	GATC	4 cut(s)	3, 390, 514, 1084
MboII	GAAGA	5 cut(s)	692, 1023, 1079, 1145, 1219
MfeI	CAATTG	1 cut(s)	154
MflI	RGATCY	1 cut(s)	1084
MhlI	GDGCHC	3 cut(s)	432, 542, 975
MluCI	AATT	6 cut(s)	42, 91, 154, 209, 766, 1153
MlyI	GAGTC	1 cut(s)	428
MmeI	TCCRAC	1 cut(s)	46
Mph1103I	ATGCAT	1 cut(s)	1079
MroXI	GAANNNNTTC	2 cut(s)	509, 915
MseI	TTAA	2 cut(s)	465, 1146
MslI	CAYNNNNRTG	3 cut(s)	714, 891, 897
MspI	CCGG	4 cut(s)	122, 128, 321, 635
MspR9I	CCNGG	3 cut(s)	122, 128, 1365
MunI	CAATTG	1 cut(s)	154
Mva1269I	GAATGC	3 cut(s)	502, 553, 917
MvaI	CCWGG	1 cut(s)	1365
MvnI	CGCG	2 cut(s)	273, 318
MwoI	GCNNNNNNNGC	6 cut(s)	557, 577, 590, 921, 1157, 1385
NciI	CCSGG	2 cut(s)	122, 128
NcoI	CCATGG	2 cut(s)	648, 1250
NdeII	GATC	4 cut(s)	3, 390, 514, 1084
NlaIV	GGNNCC	3 cut(s)	126, 1183, 1362
NmuCI	GTSAC	5 cut(s)	312, 643, 658, 683, 955
NsiI	ATGCAT	1 cut(s)	1079
NspI	RCATGY	3 cut(s)	896, 984, 1141
PciSI	GCTCTTC	1 cut(s)	705
PcsI	WCGNNNNNNNCGW	2 cut(s)	857, 860
PctI	GAATGC	3 cut(s)	502, 553, 917
PdmI	GAANNNNTTC	2 cut(s)	509, 915
PfeI	GAWTC	1 cut(s)	18
PfoI	TCCNGGA	1 cut(s)	120
PkrI	GCNGC	4 cut(s)	68, 402, 1065, 1172
PleI	GAGTC	1 cut(s)	428
PpsI	GAGTC	1 cut(s)	428
Psp6I	CCWGG	1 cut(s)	1363
PspFI	CCCAGC	2 cut(s)	226, 535
PspGI	CCWGG	1 cut(s)	1363
PspN4I	GGNNCC	3 cut(s)	126, 1183, 1362
PspPI	GGNCC	1 cut(s)	124
PsuI	RGATCY	1 cut(s)	1084
RsaI	GTAC	1 cut(s)	102
RsaNI	GTAC	1 cut(s)	101
RseI	CAYNNNNRTG	3 cut(s)	714, 891, 897
SapI	GCTCTTC	1 cut(s)	705
SaqAI	TTAA	2 cut(s)	465, 1146
SatI	GCNGC	4 cut(s)	67, 401, 1064, 1171
Sau3AI	GATC	4 cut(s)	3, 390, 514, 1084
Sau96I	GGNCC	1 cut(s)	124
SchI	GAGTC	1 cut(s)	428
ScrFI	CCNGG	3 cut(s)	122, 128, 1365
SduI	GDGCHC	3 cut(s)	432, 542, 975
SfaNI	GCATC	3 cut(s)	265, 873, 1064
SfcI	CTRYAG	1 cut(s)	594
SgrAI	CRCCGGYG	1 cut(s)	320
SinI	GGWCC	1 cut(s)	124
SmiMI	CAYNNNNRTG	3 cut(s)	714, 891, 897
SmlI	CTYRAG	1 cut(s)	1109
SmoI	CTYRAG	1 cut(s)	1109
SpeI	ACTAGT	1 cut(s)	161
Sse9I	AATT	6 cut(s)	42, 91, 154, 209, 766, 1153
SsiI	CCGC	7 cut(s)	482, 560, 576, 624, 740, 935, 1100
SspMI	CTAG	4 cut(s)	137, 162, 585, 1244
StyD4I	CCNGG	3 cut(s)	120, 126, 1363
StyI	CCWWGG	3 cut(s)	477, 648, 1250
TaaI	ACNGT	2 cut(s)	369, 1000
TaiI	ACGT	5 cut(s)	220, 306, 510, 665, 863
TaqI	TCGA	4 cut(s)	432, 513, 827, 863
TasI	AATT	6 cut(s)	42, 91, 154, 209, 766, 1153
TatI	WGTACW	1 cut(s)	100
TfiI	GAWTC	1 cut(s)	18
Tru1I	TTAA	2 cut(s)	465, 1146
Tru9I	TTAA	2 cut(s)	465, 1146
TscAI	CASTG	3 cut(s)	245, 372, 982
TseFI	GTSAC	5 cut(s)	312, 643, 658, 683, 955
TseI	GCWGC	4 cut(s)	66, 400, 1063, 1170
Tsp45I	GTSAC	5 cut(s)	312, 643, 658, 683, 955
TspDTI	ATGAA	3 cut(s)	395, 977, 1046
TspGWI	ACGGA	2 cut(s)	517, 1345
TspRI	CASTG	3 cut(s)	245, 372, 982
VpaK11BI	GGWCC	1 cut(s)	124
XapI	RAATTY	4 cut(s)	42, 91, 766, 1153
XceI	RCATGY	3 cut(s)	896, 984, 1141
XmnI	GAANNNNTTC	2 cut(s)	509, 915
XspI	CTAG	4 cut(s)	137, 162, 585, 1244
ZraI	GACGTC	1 cut(s)	861
Zsp2I	ATGCAT	1 cut(s)	1079

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.