Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0015111

Physical Location & Seq

Genomic Coordinates Reverse (-)

69499754 .. 69500548

Gene Structure 795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG441600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

ATGTTTATAGAGCTTAGGAAATGCGGGTTACTGCCGGATGATGTGACCATGGTTAGTGTCACGTCAGCTTGTGGTGGTCTGGGTGACTTGGGGTTGGCTCTTCAGTTGCATAAGTGTGTTTATCAAGCTGAAATCGTTGCGGAGAAATCGGATGTGCTGATGTTGAATTCGCTTGTTGATATGTATGGGAAATGTGGGAGGATGGACTTGGCTCACGGGGTGTTTTCGAGGATGGAGCAACAGAATGTGTCGTCGTGGACGTCGATGATTGTGGGGTATGGGATGCACGGGCATGTGGATGAAGCGCTGGAATGCTTTCGGTGCATGAGGGAGGCGGGAGTGAGGCCGAACCATGTGACCTTTGTTGGGGTGCTCAGTGCATGTGTTCATGGGGGGACAGTGCAAGAGGGAAGATATTACTTTGAAATGATGAACAAGGATTATGGGATAAACCCTCGCTTGCAGCATTATGGATGCATGGTGGATCTTCTTGGCAGAGCGGGGTTGCTTGAGGAGGCGAGGAAAATGGTGGAAGACATGCCGATGAAAGCAAATTCGGCAGTCTGGGGCTGCCTGATGGGAGCCTGTGAGAAATATGGGAATGTGAAGATGGGGGAGTGGGTGGCTAAGCATTTGCAAGAACTAGAGCCATGGAATGATGGGGCTTTTGTGGTTTTATCTAATATCTATGCCAGTAGAGGTTTATGGAAAGAGGTTGAGAGGGTAAGACGGATTATGCACCAGAGAAAGCTTGCTAAGGTTCCTGGTTATAGCTTGGCAGGAAGTGCAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

264

Amino Acids

29.41

Weight (kDa)

6.5

Isoelectric Point (pI)

41.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	82 - 129	9.5e-11	PPR repeat family
PPR	PF01535	85 - 114	1.5e-08	PPR repeat
E_motif	PF20431	199 - 258	1.7e-16	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77170
fragaria_vesca	FvH4_7g33970
malus_domestica	MD01G1235900.v1.1
prunus_persica	Prupe.2G326000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0384201
rosa_laevigata	RLG00000026060
rosa_multiflora	Rmu_co8317187.1_g000001 Rmu_sc0005139.1_g000005 Rmu_sc0014578.1_g000005
rosa_roxburghii	Rroxscaffold_4G00276860
rosa_rugosa	Rorug01G0445700
rosa_samantha	Rh1AG471200 Rh1BG429000 Rh1CG441600 Rh1DG461700
rosa_wichuraiana	Rw1G040130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	263
AccBSI	CCGCTC	1 cut(s)	500
AciI	CCGC	4 cut(s)	24, 140, 335, 500
AclWI	GGATC	1 cut(s)	492
AcsI	RAATTY	2 cut(s)	166, 553
AcuI	CTGAAG	1 cut(s)	86
AcyI	GRCGYC	1 cut(s)	260
AdeI	CACNNNGTG	1 cut(s)	220
AfeI	AGCGCT	1 cut(s)	306
AfiI	CCNNNNNNNGG	1 cut(s)	366
AgsI	TTSAA	2 cut(s)	166, 425
AjiI	CACGTC	1 cut(s)	63
AjnI	CCWGG	1 cut(s)	763
AluBI	AGCT	5 cut(s)	13, 68, 128, 751, 774
AluI	AGCT	5 cut(s)	13, 68, 128, 751, 774
Alw21I	GWGCWC	1 cut(s)	375
AlwI	GGATC	1 cut(s)	492
Aor51HI	AGCGCT	1 cut(s)	306
AoxI	GGCC	1 cut(s)	344
ApeKI	GCWGC	2 cut(s)	463, 570
ApoI	RAATTY	2 cut(s)	166, 553
Asp700I	GAANNNNTTC	1 cut(s)	315
AspLEI	GCGC	1 cut(s)	307
AsuHPI	GGTGA	1 cut(s)	95
BbsI	GAAGAC	1 cut(s)	540
Bbv12I	GWGCWC	1 cut(s)	375
BbvI	GCAGC	2 cut(s)	475, 557
BccI	CCATC	5 cut(s)	196, 226, 571, 604, 653
BciT130I	CCWGG	1 cut(s)	765
BfaI	CTAG	1 cut(s)	644
BfoI	RGCGCY	1 cut(s)	308
BisI	GCNGC	2 cut(s)	464, 571
BlpI	GCTNAGC	1 cut(s)	627
BlsI	GCNGC	2 cut(s)	465, 572
Bme1390I	CCNGG	1 cut(s)	765
BmgBI	CACGTC	1 cut(s)	63
BmiI	GGNNCC	2 cut(s)	583, 762
BmrFI	CCNGG	1 cut(s)	765
BmsI	GCATC	2 cut(s)	273, 464
BpiI	GAAGAC	1 cut(s)	540
Bpu10I	CCTNAGC	2 cut(s)	14, 756
Bpu1102I	GCTNAGC	1 cut(s)	627
BpuEI	CTTGAG	1 cut(s)	530
BsaHI	GRCGYC	1 cut(s)	260
BsaJI	CCNNGG	2 cut(s)	48, 650
Bsc4I	CCNNNNNNNGG	1 cut(s)	366
Bse1I	ACTGG	1 cut(s)	693
BseBI	CCWGG	1 cut(s)	765
BseDI	CCNNGG	2 cut(s)	48, 650
BseGI	GGATG	7 cut(s)	43, 157, 207, 237, 288, 304, 479
BseLI	CCNNNNNNNGG	1 cut(s)	366
BseMII	CTCAG	1 cut(s)	388
BseNI	ACTGG	1 cut(s)	693
BseRI	GAGGAG	1 cut(s)	527
BseXI	GCAGC	2 cut(s)	475, 557
BshFI	GGCC	1 cut(s)	346
BsiHKAI	GWGCWC	1 cut(s)	375
BsiSI	CCGG	1 cut(s)	35
BslFI	GGGAC	1 cut(s)	409
BslI	CCNNNNNNNGG	1 cut(s)	366
BsmFI	GGGAC	1 cut(s)	409
BsmI	GAATGC	1 cut(s)	317
BsnI	GGCC	1 cut(s)	346
Bsp1286I	GDGCHC	1 cut(s)	375
Bsp143I	GATC	1 cut(s)	484
Bsp1720I	GCTNAGC	1 cut(s)	627
Bsp19I	CCATGG	2 cut(s)	48, 650
BspACI	CCGC	4 cut(s)	24, 140, 335, 500
BspANI	GGCC	1 cut(s)	346
BspCNI	CTCAG	1 cut(s)	387
BspLI	GGNNCC	2 cut(s)	583, 762
BspPI	GGATC	1 cut(s)	492
BspQI	GCTCTTC	1 cut(s)	105
BsrBI	CCGCTC	1 cut(s)	500
BsrI	ACTGG	1 cut(s)	693
BssECI	CCNNGG	2 cut(s)	48, 650
BssMI	GATC	1 cut(s)	484
BssNI	GRCGYC	1 cut(s)	260
BssT1I	CCWWGG	2 cut(s)	48, 650
Bst2UI	CCWGG	1 cut(s)	765
Bst4CI	ACNGT	1 cut(s)	400
Bst6I	CTCTTC	1 cut(s)	105
BstACI	GRCGYC	1 cut(s)	260
BstAPI	GCANNNNNTGC	1 cut(s)	785
BstC8I	GCNNGC	2 cut(s)	461, 753
BstDEI	CTNAG	4 cut(s)	14, 374, 627, 756
BstDSI	CCRYGG	2 cut(s)	48, 650
BstF5I	GGATG	7 cut(s)	43, 157, 207, 237, 288, 304, 479
BstH2I	RGCGCY	1 cut(s)	308
BstHHI	GCGC	1 cut(s)	307
BstKTI	GATC	1 cut(s)	487
BstMBI	GATC	1 cut(s)	484
BstMWI	GCNNNNNNNGC	3 cut(s)	321, 557, 785
BstNI	CCWGG	1 cut(s)	765
BstNSI	RCATGY	3 cut(s)	296, 384, 541
BstSCI	CCNGG	1 cut(s)	763
BstV1I	GCAGC	2 cut(s)	475, 557
BstV2I	GAAGAC	1 cut(s)	540
BstX2I	RGATCY	1 cut(s)	484
BstYI	RGATCY	1 cut(s)	484
BsuRI	GGCC	1 cut(s)	346
BtgI	CCRYGG	2 cut(s)	48, 650
BtrI	CACGTC	1 cut(s)	63
BtsCI	GGATG	7 cut(s)	43, 157, 207, 237, 288, 304, 479
BtsIMutI	CAGTG	2 cut(s)	382, 405
Cac8I	GCNNGC	2 cut(s)	461, 753
CfoI	GCGC	1 cut(s)	307
CviAII	CATG	9 cut(s)	49, 293, 325, 353, 381, 389, 478, 538, 651
DdeI	CTNAG	4 cut(s)	14, 374, 627, 756
DpnI	GATC	1 cut(s)	486
DpnII	GATC	1 cut(s)	484
DraIII	CACNNNGTG	1 cut(s)	220
Eam1104I	CTCTTC	1 cut(s)	105
EarI	CTCTTC	1 cut(s)	105
Eco130I	CCWWGG	2 cut(s)	48, 650
Eco47III	AGCGCT	1 cut(s)	306
Eco57I	CTGAAG	1 cut(s)	86
EcoRI	GAATTC	1 cut(s)	166
EcoRII	CCWGG	1 cut(s)	763
EcoT14I	CCWWGG	2 cut(s)	48, 650
EcoT22I	ATGCAT	1 cut(s)	479
ErhI	CCWWGG	2 cut(s)	48, 650
FaeI	CATG	9 cut(s)	52, 296, 328, 356, 384, 392, 481, 541, 654
FaqI	GGGAC	1 cut(s)	409
FatI	CATG	9 cut(s)	48, 292, 324, 352, 380, 388, 477, 537, 650
FauI	CCCGC	3 cut(s)	17, 328, 493
Fnu4HI	GCNGC	2 cut(s)	464, 571
FokI	GGATG	7 cut(s)	50, 164, 214, 244, 295, 311, 486
Fsp4HI	GCNGC	2 cut(s)	464, 571
FspBI	CTAG	1 cut(s)	644
GlaI	GCGC	1 cut(s)	306
GluI	GCNGC	2 cut(s)	464, 571
HaeII	RGCGCY	1 cut(s)	308
HaeIII	GGCC	1 cut(s)	346
HapII	CCGG	1 cut(s)	35
HhaI	GCGC	1 cut(s)	307
Hin1I	GRCGYC	1 cut(s)	260
Hin1II	CATG	9 cut(s)	52, 296, 328, 356, 384, 392, 481, 541, 654
Hin6I	GCGC	1 cut(s)	305
HinP1I	GCGC	1 cut(s)	305
HindIII	AAGCTT	1 cut(s)	749
HpaII	CCGG	1 cut(s)	35
HphI	GGTGA	1 cut(s)	95
Hpy166II	GTNNAC	1 cut(s)	258
Hpy188I	TCNGA	1 cut(s)	151
Hpy8I	GTNNAC	1 cut(s)	258
Hpy99I	CGWCG	2 cut(s)	256, 265
HpyCH4III	ACNGT	1 cut(s)	400
HpyCH4IV	ACGT	2 cut(s)	62, 260
HpyF10VI	GCNNNNNNNGC	3 cut(s)	321, 557, 785
HpyF3I	CTNAG	4 cut(s)	14, 374, 627, 756
HpySE526I	ACGT	2 cut(s)	62, 260
Hsp92I	GRCGYC	1 cut(s)	260
Hsp92II	CATG	9 cut(s)	52, 296, 328, 356, 384, 392, 481, 541, 654
HspAI	GCGC	1 cut(s)	305
Kzo9I	GATC	1 cut(s)	484
LguI	GCTCTTC	1 cut(s)	105
LmnI	GCTCC	2 cut(s)	235, 581
Lsp1109I	GCAGC	2 cut(s)	475, 557
LweI	GCATC	2 cut(s)	273, 464
MaeI	CTAG	1 cut(s)	644
MaeII	ACGT	2 cut(s)	62, 260
MaeIII	GTNAC	5 cut(s)	27, 43, 58, 83, 355
MalI	GATC	1 cut(s)	486
MbiI	CCGCTC	1 cut(s)	500
MboI	GATC	1 cut(s)	484
MboII	GAAGA	5 cut(s)	92, 423, 479, 545, 619
MflI	RGATCY	1 cut(s)	484
MhlI	GDGCHC	1 cut(s)	375
MluCI	AATT	2 cut(s)	166, 553
Mph1103I	ATGCAT	1 cut(s)	479
MroXI	GAANNNNTTC	1 cut(s)	315
MslI	CAYNNNNRTG	4 cut(s)	114, 291, 297, 542
MspI	CCGG	1 cut(s)	35
MspR9I	CCNGG	1 cut(s)	765
Mva1269I	GAATGC	1 cut(s)	317
MvaI	CCWGG	1 cut(s)	765
MwoI	GCNNNNNNNGC	3 cut(s)	321, 557, 785
NcoI	CCATGG	2 cut(s)	48, 650
NdeII	GATC	1 cut(s)	484
NlaIII	CATG	9 cut(s)	52, 296, 328, 356, 384, 392, 481, 541, 654
NlaIV	GGNNCC	2 cut(s)	583, 762
NmuCI	GTSAC	4 cut(s)	43, 58, 83, 355
NsiI	ATGCAT	1 cut(s)	479
NspI	RCATGY	3 cut(s)	296, 384, 541
PciSI	GCTCTTC	1 cut(s)	105
PcsI	WCGNNNNNNNCGW	2 cut(s)	257, 260
PctI	GAATGC	1 cut(s)	317
PdmI	GAANNNNTTC	1 cut(s)	315
PkrI	GCNGC	2 cut(s)	465, 572
Psp6I	CCWGG	1 cut(s)	763
PspGI	CCWGG	1 cut(s)	763
PspN4I	GGNNCC	2 cut(s)	583, 762
PsuI	RGATCY	1 cut(s)	484
RseI	CAYNNNNRTG	4 cut(s)	114, 291, 297, 542
SapI	GCTCTTC	1 cut(s)	105
SatI	GCNGC	2 cut(s)	464, 571
Sau3AI	GATC	1 cut(s)	484
ScrFI	CCNGG	1 cut(s)	765
SduI	GDGCHC	1 cut(s)	375
SfaNI	GCATC	2 cut(s)	273, 464
SmiMI	CAYNNNNRTG	4 cut(s)	114, 291, 297, 542
SmlI	CTYRAG	1 cut(s)	509
SmoI	CTYRAG	1 cut(s)	509
Sse9I	AATT	2 cut(s)	166, 553
SsiI	CCGC	4 cut(s)	24, 140, 335, 500
SspMI	CTAG	1 cut(s)	644
StyD4I	CCNGG	1 cut(s)	763
StyI	CCWWGG	2 cut(s)	48, 650
TaaI	ACNGT	1 cut(s)	400
TaiI	ACGT	2 cut(s)	65, 263
TaqI	TCGA	2 cut(s)	227, 263
TasI	AATT	2 cut(s)	166, 553
TscAI	CASTG	2 cut(s)	382, 405
TseFI	GTSAC	4 cut(s)	43, 58, 83, 355
TseI	GCWGC	2 cut(s)	463, 570
Tsp45I	GTSAC	4 cut(s)	43, 58, 83, 355
TspDTI	ATGAA	4 cut(s)	315, 377, 446, 560
TspGWI	ACGGA	1 cut(s)	745
TspRI	CASTG	2 cut(s)	382, 405
XapI	RAATTY	2 cut(s)	166, 553
XceI	RCATGY	3 cut(s)	296, 384, 541
XmnI	GAANNNNTTC	1 cut(s)	315
XspI	CTAG	1 cut(s)	644
ZraI	GACGTC	1 cut(s)	261
Zsp2I	ATGCAT	1 cut(s)	479

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.