Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0014578.1

Orthogroup ID

OG0015111

Physical Location & Seq

Genomic Coordinates Forward (+)

9980 .. 11377

Gene Structure 1398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0014578.1_g000005.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

atgatcaagctttgtagaatccaactacccaaagccaccagaatttcagaccttctcaaccgaagctgcttgactacaacgacaactgctggaaatttggatgtacaatctcctccaagtatcccggacccggaaacactagcaacccagttgtccaattgcactagtttatctgaactgaaccaaatctatgcccacattatcagaacccaattcctacgtctccacccagccccatttcactggaacaatatcataaggtcatacaccagacgcgatgctccttccaagtcgctctttgtttacgtttccatgtcacgcgccggtgttttacccgactgctacaccatccccattgttttgaaaacactgtgtcagctttttgctgtggggatcggcaggcagcttcattctgtggctgtgaggattgggctcgactcaaatgagttctgtgagagtgggtttattaacttgtattccaaggcgggagagtttgagaatgcacggaacgtgttcgatcaaaaccctgagagaaagctgggctcttggaatgccctcattgcggggctttcgcaaggcgggcgtgctagggaagctgtagagatgtttatagagcttaggaaatgcgggttactgccggatgatgtgaccatggttagtgtcacgtcagcttgtggtggtctgggtgacttggggttggctcttcagttgcataagtgtgtttatcaagctgaaatcgttgcggagaaatcggatgtgctgatgttgaattcgcttgttgatatgtatgggaaatgtgggaggatggacttggctcacagggtgttttcgaggatggagcaacagaatgtgtcgtcgtggacgtcgatgattgtggggtatgggatgcacgggcatgtggatgaggcgctggaatgctttcggtgcatgagggaggcgggagtgaggccgaaccatgtgacctttgttggggtgctcagtgcatgtgttcatggggggacagtccaagagggaagatattactttgaaatgatgaacaaggattatgggataaaccctcgcttgcagcattatggatgcatggtggatcttcttggcagagcagggttgcttgaggaggcgaggaaaatggtggaagacatgccgatgaaagcaaattcggcagtctggggctgcctgatgggagcctgtgagaaatatgggaatgtgaagatgggggagtgggtggctaagcatttgcaagaactagagccatggaatgatggggcttttgtggttttatctaatatctatgccagtagaggtttatggaaagaggttgagagggtaagacggattaggcaccagagaaagcttgctaaggttcctggttatagcttggcaggaagtgcagattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

465

Amino Acids

51.87

Weight (kDa)

8.4

Isoelectric Point (pI)

42.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77170
fragaria_vesca	FvH4_7g33970
malus_domestica	MD01G1235900.v1.1
prunus_persica	Prupe.2G326000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0384201
rosa_laevigata	RLG00000026060
rosa_multiflora	Rmu_co8317187.1_g000001 Rmu_sc0005139.1_g000005 Rmu_sc0014578.1_g000005
rosa_roxburghii	Rroxscaffold_4G00276860
rosa_rugosa	Rorug01G0445700
rosa_samantha	Rh1AG471200 Rh1BG429000 Rh1CG441600 Rh1DG461700
rosa_wichuraiana	Rw1G040130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	866
AccB1I	GGYRCC	1 cut(s)	1341
AccII	CGCG	2 cut(s)	276, 321
AciI	CCGC	6 cut(s)	485, 563, 579, 627, 743, 938
AclWI	GGATC	2 cut(s)	401, 1095
AcsI	RAATTY	4 cut(s)	42, 94, 769, 1156
AcuI	CTGAAG	1 cut(s)	689
AcyI	GRCGYC	1 cut(s)	863
AdeI	CACNNNGTG	1 cut(s)	823
AfaI	GTAC	1 cut(s)	105
AfiI	CCNNNNNNNGG	3 cut(s)	130, 562, 969
AflIII	ACRYGT	1 cut(s)	510
AgsI	TTSAA	3 cut(s)	364, 769, 1028
AhlI	ACTAGT	1 cut(s)	164
AjiI	CACGTC	1 cut(s)	666
AjnI	CCWGG	1 cut(s)	1366
Alw21I	GWGCWC	1 cut(s)	978
Alw26I	GTCTC	1 cut(s)	227
AlwI	GGATC	2 cut(s)	401, 1095
AoxI	GGCC	1 cut(s)	947
ApeKI	GCWGC	4 cut(s)	66, 403, 1066, 1173
ApoI	RAATTY	4 cut(s)	42, 94, 769, 1156
Asp700I	GAANNNNTTC	2 cut(s)	512, 918
AspLEI	GCGC	2 cut(s)	323, 910
AspS9I	GGNCC	1 cut(s)	127
AsuC2I	CCSGG	2 cut(s)	125, 131
AsuHPI	GGTGA	1 cut(s)	698
AvaII	GGWCC	1 cut(s)	127
BanI	GGYRCC	1 cut(s)	1341
BanII	GRGCYC	2 cut(s)	435, 545
BbsI	GAAGAC	1 cut(s)	1143
Bbv12I	GWGCWC	1 cut(s)	978
BbvI	GCAGC	4 cut(s)	53, 415, 1078, 1160
BccI	CCATC	6 cut(s)	356, 799, 829, 1174, 1207, 1256
BciT130I	CCWGG	1 cut(s)	1368
BciVI	GTATCC	1 cut(s)	131
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	2 cut(s)	125, 131
BcoDI	GTCTC	1 cut(s)	227
BcuI	ACTAGT	1 cut(s)	164
BfaI	CTAG	4 cut(s)	140, 165, 588, 1247
BfmI	CTRYAG	1 cut(s)	597
BfoI	RGCGCY	1 cut(s)	911
BfuI	GTATCC	1 cut(s)	131
BisI	GCNGC	4 cut(s)	67, 404, 1067, 1174
BlpI	GCTNAGC	1 cut(s)	1230
BlsI	GCNGC	4 cut(s)	68, 405, 1068, 1175
Bme1390I	CCNGG	3 cut(s)	125, 131, 1368
Bme18I	GGWCC	1 cut(s)	127
BmgBI	CACGTC	1 cut(s)	666
BmgT120I	GGNCC	1 cut(s)	127
BmiI	GGNNCC	4 cut(s)	129, 1186, 1343, 1365
BmrFI	CCNGG	3 cut(s)	125, 131, 1368
BmrI	ACTGGG	1 cut(s)	142
BmsI	GCATC	3 cut(s)	268, 876, 1067
BmuI	ACTGGG	1 cut(s)	142
BpiI	GAAGAC	1 cut(s)	1143
Bpu10I	CCTNAGC	2 cut(s)	617, 1359
Bpu1102I	GCTNAGC	1 cut(s)	1230
BpuEI	CTTGAG	1 cut(s)	1133
BpuMI	CCSGG	2 cut(s)	125, 131
BsaHI	GRCGYC	1 cut(s)	863
BsaJI	CCNNGG	3 cut(s)	480, 651, 1253
Bsc4I	CCNNNNNNNGG	3 cut(s)	130, 562, 969
Bse118I	RCCGGY	1 cut(s)	323
Bse1I	ACTGG	3 cut(s)	148, 248, 1296
Bse3DI	GCAATG	1 cut(s)	558
BseBI	CCWGG	1 cut(s)	1368
BseDI	CCNNGG	3 cut(s)	480, 651, 1253
BseGI	GGATG	9 cut(s)	106, 348, 646, 760, 810, 840, 891, 907, 1082
BseLI	CCNNNNNNNGG	3 cut(s)	130, 562, 969
BseMI	GCAATG	1 cut(s)	558
BseMII	CTCAG	2 cut(s)	519, 991
BseNI	ACTGG	3 cut(s)	148, 248, 1296
BseRI	GAGGAG	2 cut(s)	102, 1130
BseXI	GCAGC	4 cut(s)	53, 415, 1078, 1160
BseYI	CCCAGC	2 cut(s)	229, 538
Bsh1236I	CGCG	2 cut(s)	276, 321
BshFI	GGCC	1 cut(s)	949
BshNI	GGYRCC	1 cut(s)	1341
BsiHKAI	GWGCWC	1 cut(s)	978
BsiSI	CCGG	4 cut(s)	125, 131, 324, 638
BslFI	GGGAC	1 cut(s)	1012
BslI	CCNNNNNNNGG	3 cut(s)	130, 562, 969
BsmAI	GTCTC	1 cut(s)	227
BsmBI	CGTCTC	1 cut(s)	227
BsmFI	GGGAC	1 cut(s)	1012
BsmI	GAATGC	3 cut(s)	505, 556, 920
BsnI	GGCC	1 cut(s)	949
Bsp1286I	GDGCHC	3 cut(s)	435, 545, 978
Bsp1407I	TGTACA	1 cut(s)	103
Bsp143I	GATC	4 cut(s)	3, 393, 517, 1087
Bsp1720I	GCTNAGC	1 cut(s)	1230
Bsp19I	CCATGG	2 cut(s)	651, 1253
BspACI	CCGC	6 cut(s)	485, 563, 579, 627, 743, 938
BspANI	GGCC	1 cut(s)	949
BspCNI	CTCAG	2 cut(s)	520, 990
BspFNI	CGCG	2 cut(s)	276, 321
BspLI	GGNNCC	4 cut(s)	129, 1186, 1343, 1365
BspPI	GGATC	2 cut(s)	401, 1095
BspQI	GCTCTTC	1 cut(s)	708
BspT107I	GGYRCC	1 cut(s)	1341
BsrDI	GCAATG	1 cut(s)	558
BsrFI	RCCGGY	1 cut(s)	323
BsrGI	TGTACA	1 cut(s)	103
BsrI	ACTGG	3 cut(s)	148, 248, 1296
BssAI	RCCGGY	1 cut(s)	323
BssECI	CCNNGG	3 cut(s)	480, 651, 1253
BssMI	GATC	4 cut(s)	3, 393, 517, 1087
BssNI	GRCGYC	1 cut(s)	863
BssT1I	CCWWGG	3 cut(s)	480, 651, 1253
Bst2UI	CCWGG	1 cut(s)	1368
Bst4CI	ACNGT	2 cut(s)	372, 1003
Bst6I	CTCTTC	1 cut(s)	708
BstACI	GRCGYC	1 cut(s)	863
BstAPI	GCANNNNNTGC	1 cut(s)	1388
BstAUI	TGTACA	1 cut(s)	103
BstC8I	GCNNGC	5 cut(s)	401, 581, 585, 1064, 1356
BstDEI	CTNAG	5 cut(s)	528, 617, 977, 1230, 1359
BstDSI	CCRYGG	2 cut(s)	651, 1253
BstF5I	GGATG	9 cut(s)	106, 348, 646, 760, 810, 840, 891, 907, 1082
BstFNI	CGCG	2 cut(s)	276, 321
BstH2I	RGCGCY	1 cut(s)	911
BstHHI	GCGC	2 cut(s)	323, 910
BstKTI	GATC	4 cut(s)	6, 396, 520, 1090
BstMAI	GTCTC	1 cut(s)	227
BstMBI	GATC	4 cut(s)	3, 393, 517, 1087
BstMWI	GCNNNNNNNGC	6 cut(s)	560, 580, 593, 924, 1160, 1388
BstNI	CCWGG	1 cut(s)	1368
BstNSI	RCATGY	3 cut(s)	899, 987, 1144
BstSCI	CCNGG	3 cut(s)	123, 129, 1366
BstSFI	CTRYAG	1 cut(s)	597
BstUI	CGCG	2 cut(s)	276, 321
BstV1I	GCAGC	4 cut(s)	53, 415, 1078, 1160
BstV2I	GAAGAC	1 cut(s)	1143
BstX2I	RGATCY	1 cut(s)	1087
BstXI	CCANNNNNNTGG	1 cut(s)	243
BstYI	RGATCY	1 cut(s)	1087
BsuI	GTATCC	1 cut(s)	131
BsuRI	GGCC	1 cut(s)	949
BtgI	CCRYGG	2 cut(s)	651, 1253
BtgZI	GCGATG	1 cut(s)	291
BtrI	CACGTC	1 cut(s)	666
BtsCI	GGATG	9 cut(s)	106, 348, 646, 760, 810, 840, 891, 907, 1082
BtsIMutI	CAGTG	3 cut(s)	241, 368, 985
Cac8I	GCNNGC	5 cut(s)	401, 581, 585, 1064, 1356
CfoI	GCGC	2 cut(s)	323, 910
Cfr10I	RCCGGY	1 cut(s)	323
Cfr13I	GGNCC	1 cut(s)	127
CseI	GACGC	1 cut(s)	282
Csp6I	GTAC	1 cut(s)	104
CviQI	GTAC	1 cut(s)	104
DdeI	CTNAG	5 cut(s)	528, 617, 977, 1230, 1359
DpnI	GATC	4 cut(s)	5, 395, 519, 1089
DpnII	GATC	4 cut(s)	3, 393, 517, 1087
DraIII	CACNNNGTG	1 cut(s)	823
Eam1104I	CTCTTC	1 cut(s)	708
EarI	CTCTTC	1 cut(s)	708
Eco130I	CCWWGG	3 cut(s)	480, 651, 1253
Eco24I	GRGCYC	2 cut(s)	435, 545
Eco47I	GGWCC	1 cut(s)	127
Eco57I	CTGAAG	1 cut(s)	689
EcoRI	GAATTC	1 cut(s)	769
EcoRII	CCWGG	1 cut(s)	1366
EcoT14I	CCWWGG	3 cut(s)	480, 651, 1253
EcoT22I	ATGCAT	1 cut(s)	1082
EcoT38I	GRGCYC	2 cut(s)	435, 545
ErhI	CCWWGG	3 cut(s)	480, 651, 1253
Esp3I	CGTCTC	1 cut(s)	227
FalI	AAGNNNNNCTT	2 cut(s)	281, 313
FaqI	GGGAC	1 cut(s)	1012
FauI	CCCGC	5 cut(s)	478, 556, 572, 620, 931
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	4 cut(s)	67, 404, 1067, 1174
FokI	GGATG	9 cut(s)	113, 335, 653, 767, 817, 847, 898, 914, 1089
FriOI	GRGCYC	2 cut(s)	435, 545
Fsp4HI	GCNGC	4 cut(s)	67, 404, 1067, 1174
FspBI	CTAG	4 cut(s)	140, 165, 588, 1247
GlaI	GCGC	2 cut(s)	322, 909
GluI	GCNGC	4 cut(s)	67, 404, 1067, 1174
GsaI	CCCAGC	2 cut(s)	233, 542
HaeII	RGCGCY	1 cut(s)	911
HaeIII	GGCC	1 cut(s)	949
HapII	CCGG	4 cut(s)	125, 131, 324, 638
HgaI	GACGC	1 cut(s)	282
HhaI	GCGC	2 cut(s)	323, 910
Hin1I	GRCGYC	1 cut(s)	863
Hin6I	GCGC	2 cut(s)	321, 908
HinP1I	GCGC	2 cut(s)	321, 908
HindIII	AAGCTT	2 cut(s)	8, 1352
HinfI	GANTC	2 cut(s)	18, 437
HpaII	CCGG	4 cut(s)	125, 131, 324, 638
HphI	GGTGA	1 cut(s)	698
Hpy166II	GTNNAC	2 cut(s)	304, 861
Hpy188I	TCNGA	4 cut(s)	49, 175, 206, 754
Hpy8I	GTNNAC	2 cut(s)	304, 861
Hpy99I	CGWCG	2 cut(s)	859, 868
HpyAV	CCTTC	2 cut(s)	62, 294
HpyCH4III	ACNGT	2 cut(s)	372, 1003
HpyCH4IV	ACGT	5 cut(s)	220, 306, 510, 665, 863
HpyF10VI	GCNNNNNNNGC	6 cut(s)	560, 580, 593, 924, 1160, 1388
HpyF3I	CTNAG	5 cut(s)	528, 617, 977, 1230, 1359
HpySE526I	ACGT	5 cut(s)	220, 306, 510, 665, 863
Hsp92I	GRCGYC	1 cut(s)	863
HspAI	GCGC	2 cut(s)	321, 908
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	4 cut(s)	3, 393, 517, 1087
LguI	GCTCTTC	1 cut(s)	708
LmnI	GCTCC	3 cut(s)	286, 838, 1184
Lsp1109I	GCAGC	4 cut(s)	53, 415, 1078, 1160
LweI	GCATC	3 cut(s)	268, 876, 1067
MaeI	CTAG	4 cut(s)	140, 165, 588, 1247
MaeII	ACGT	5 cut(s)	220, 306, 510, 665, 863
MaeIII	GTNAC	6 cut(s)	315, 630, 646, 661, 686, 958
MalI	GATC	4 cut(s)	5, 395, 519, 1089
MboI	GATC	4 cut(s)	3, 393, 517, 1087
MboII	GAAGA	5 cut(s)	695, 1026, 1082, 1148, 1222
MfeI	CAATTG	1 cut(s)	157
MflI	RGATCY	1 cut(s)	1087
MhlI	GDGCHC	3 cut(s)	435, 545, 978
MluCI	AATT	6 cut(s)	42, 94, 157, 212, 769, 1156
MlyI	GAGTC	1 cut(s)	431
MmeI	TCCRAC	1 cut(s)	46
Mph1103I	ATGCAT	1 cut(s)	1082
MroXI	GAANNNNTTC	2 cut(s)	512, 918
MseI	TTAA	1 cut(s)	468
MslI	CAYNNNNRTG	4 cut(s)	717, 894, 900, 1145
MspI	CCGG	4 cut(s)	125, 131, 324, 638
MspR9I	CCNGG	3 cut(s)	125, 131, 1368
MunI	CAATTG	1 cut(s)	157
Mva1269I	GAATGC	3 cut(s)	505, 556, 920
MvaI	CCWGG	1 cut(s)	1368
MvnI	CGCG	2 cut(s)	276, 321
MwoI	GCNNNNNNNGC	6 cut(s)	560, 580, 593, 924, 1160, 1388
NciI	CCSGG	2 cut(s)	125, 131
NcoI	CCATGG	2 cut(s)	651, 1253
NdeII	GATC	4 cut(s)	3, 393, 517, 1087
NlaIV	GGNNCC	4 cut(s)	129, 1186, 1343, 1365
NmuCI	GTSAC	5 cut(s)	315, 646, 661, 686, 958
NsiI	ATGCAT	1 cut(s)	1082
NspI	RCATGY	3 cut(s)	899, 987, 1144
PciSI	GCTCTTC	1 cut(s)	708
PcsI	WCGNNNNNNNCGW	2 cut(s)	860, 863
PctI	GAATGC	3 cut(s)	505, 556, 920
PdmI	GAANNNNTTC	2 cut(s)	512, 918
PfeI	GAWTC	1 cut(s)	18
PfoI	TCCNGGA	1 cut(s)	123
PkrI	GCNGC	4 cut(s)	68, 405, 1068, 1175
PleI	GAGTC	1 cut(s)	431
PpsI	GAGTC	1 cut(s)	431
Psp6I	CCWGG	1 cut(s)	1366
PspFI	CCCAGC	2 cut(s)	229, 538
PspGI	CCWGG	1 cut(s)	1366
PspN4I	GGNNCC	4 cut(s)	129, 1186, 1343, 1365
PspPI	GGNCC	1 cut(s)	127
PsuI	RGATCY	1 cut(s)	1087
RsaI	GTAC	1 cut(s)	105
RsaNI	GTAC	1 cut(s)	104
RseI	CAYNNNNRTG	4 cut(s)	717, 894, 900, 1145
SapI	GCTCTTC	1 cut(s)	708
SaqAI	TTAA	1 cut(s)	468
SatI	GCNGC	4 cut(s)	67, 404, 1067, 1174
Sau3AI	GATC	4 cut(s)	3, 393, 517, 1087
Sau96I	GGNCC	1 cut(s)	127
SchI	GAGTC	1 cut(s)	431
ScrFI	CCNGG	3 cut(s)	125, 131, 1368
SduI	GDGCHC	3 cut(s)	435, 545, 978
SfaNI	GCATC	3 cut(s)	268, 876, 1067
SfcI	CTRYAG	1 cut(s)	597
SgrAI	CRCCGGYG	1 cut(s)	323
SinI	GGWCC	1 cut(s)	127
SmiMI	CAYNNNNRTG	4 cut(s)	717, 894, 900, 1145
SmlI	CTYRAG	1 cut(s)	1112
SmoI	CTYRAG	1 cut(s)	1112
SpeI	ACTAGT	1 cut(s)	164
Sse9I	AATT	6 cut(s)	42, 94, 157, 212, 769, 1156
SsiI	CCGC	6 cut(s)	485, 563, 579, 627, 743, 938
SspMI	CTAG	4 cut(s)	140, 165, 588, 1247
StyD4I	CCNGG	3 cut(s)	123, 129, 1366
StyI	CCWWGG	3 cut(s)	480, 651, 1253
TaaI	ACNGT	2 cut(s)	372, 1003
TaiI	ACGT	5 cut(s)	223, 309, 513, 668, 866
TaqI	TCGA	4 cut(s)	435, 516, 830, 866
TasI	AATT	6 cut(s)	42, 94, 157, 212, 769, 1156
TatI	WGTACW	1 cut(s)	103
TfiI	GAWTC	1 cut(s)	18
Tru1I	TTAA	1 cut(s)	468
Tru9I	TTAA	1 cut(s)	468
TscAI	CASTG	3 cut(s)	248, 375, 985
TseFI	GTSAC	5 cut(s)	315, 646, 661, 686, 958
TseI	GCWGC	4 cut(s)	66, 403, 1066, 1173
Tsp45I	GTSAC	5 cut(s)	315, 646, 661, 686, 958
TspDTI	ATGAA	4 cut(s)	398, 980, 1049, 1163
TspGWI	ACGGA	2 cut(s)	520, 1348
TspRI	CASTG	3 cut(s)	248, 375, 985
VpaK11BI	GGWCC	1 cut(s)	127
XapI	RAATTY	4 cut(s)	42, 94, 769, 1156
XceI	RCATGY	3 cut(s)	899, 987, 1144
XmnI	GAANNNNTTC	2 cut(s)	512, 918
XspI	CTAG	4 cut(s)	140, 165, 588, 1247
ZraI	GACGTC	1 cut(s)	864
Zsp2I	ATGCAT	1 cut(s)	1082

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.