Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0015111

Physical Location & Seq

Genomic Coordinates Forward (+)

295513 .. 296910

Gene Structure 1398 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026060

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1398 bp

ATGATCAAGCTTTGTAGAATCCAACTACCCAAAGCCACCAGAATTTCAGACCTTCTCAACCGAAGCTGCTTGACTACGACTACAACTGCTGGAAATTTGGATGTACAATCTCCTCCAAGTATCCCGGACCCGGAAACACTAGCAACCCAATTGTCAAATTGCACCAGTTTATCTCAACTGAACCAAATCTATGCCCACATTATCAGAACCCAATTCCTACATCTCCACCCATCCCCATTTCACTGGAACAATATCATAAGGTCATACGCAAGACGCGATGCTCCTACCAAGTCGCTCTTTGTTTACGTTTCTATGTCACGCGCCGGTGTTTTACCCGACTGCTACACCATCCCCATTGCTTTGAAAACACTGTGTCAGCTTTTTGCTGTGGAGATCGGCAGGCAGCTTCATTCTGTGGCTGTGAGGATTGGGCTCGATTCAAACGAGTTCTGTGAGAGTGGGTTTATTAACTTGTATTCCAAGGCGGGAGAGTTTGAGAATGCACGGAACGTGTTCGATCAAAACCCTGAGAGAAAGCTGGGTTCTTGGAATGCCCTCATTGCGGGGCTTTCGCAAGGCGGGCGTGCTAGGGAAGCTGTTGAGATGTTTATAGAGCTTAGGAAATGCGGGTTACTGCCGGATGATGTGACCATGGTTACTGTCACGTCAGCTTGTGGTGGTCTAGGTGACTTGCGGTTGGCTCTTCAGTTGCATAAGTGTGTTTATCAAGCTGAAATCGTTGCGGAGAAATCGGATGTGCTGATGTTGAATTCGCTTGTTGATATGTATGGGAAATGTGGGAGGATGGACTTGGCTTACAGGGTGTTTTCGAGGATGGAGCAACAGAATGTGTCGTCGTGGACGTCGATGATTGTGGGGTATGGGATGCACGGGCATGTGGATGAGGCGCTGGAATGCTTTCGGCGCATGAGGGAGGCGGGAGTGAGGCCAAACCATGTGACCTTTGTTGGGGTGCTCAGTGCATGTGTTCATGGGGGGACAGTGCAGGAGGGAAGATATTACTTTGAAATGATGAAGAAGGATTATGGGATAAACCCTCACTTACAGCATTATGGATGCATGGTGGATCTTCTTGGCAGAGCGGGGTTGCTTGAGGAGGCGAGAAAAATGGTTGAAGATATGCCGATGAAAGCAAATTCGGCAGTCTGGGGCTGCCTGATGGGAGCCTGTGAGAAATATGGGAATGTGAAGATAGGGGAGTGGGTGGCTAAGCATTTGCAAGAACTAGAGCCATGGAATGATGGGGCTTTTGTGGTTTTATCCAATATCTATGCCAGTAGAGGTTTATGGAAAGAGGTTGAGAGGGTAAGACGGATTATGCACCAGAGAAAGCTCGCAAAGGTTCCAGGTTATAGCTTGGCAGGAAGTGCAGATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_2

Protein Analysis

466

Amino Acids

52.03

Weight (kDa)

8.42

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR	PF01535	182 - 211	4.7e-06	PPR repeat
PPR_2	PF13041	182 - 225	5.6e-07	PPR repeat family
PPR_3	PF13812	282 - 330	1e-05	Pentatricopeptide repeat domain
PPR_2	PF13041	283 - 330	4.1e-11	PPR repeat family
PPR	PF01535	286 - 315	9.4e-09	PPR repeat
E_motif	PF20431	400 - 459	2.6e-16	E motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0015111)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77170
fragaria_vesca	FvH4_7g33970
malus_domestica	MD01G1235900.v1.1
prunus_persica	Prupe.2G326000_v2.0.a1
rosa_chinensis	RchiOBHm_Chr1g0384201
rosa_laevigata	RLG00000026060
rosa_multiflora	Rmu_co8317187.1_g000001 Rmu_sc0005139.1_g000005 Rmu_sc0014578.1_g000005
rosa_roxburghii	Rroxscaffold_4G00276860
rosa_rugosa	Rorug01G0445700
rosa_samantha	Rh1AG471200 Rh1BG429000 Rh1CG441600 Rh1DG461700
rosa_wichuraiana	Rw1G040130

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	866
AccBSI	CCGCTC	1 cut(s)	1103
AccII	CGCG	2 cut(s)	276, 321
AciI	CCGC	8 cut(s)	485, 563, 579, 627, 694, 743, 938, 1103
AclWI	GGATC	1 cut(s)	1095
AcsI	RAATTY	4 cut(s)	42, 94, 769, 1156
AcuI	CTGAAG	1 cut(s)	689
AcyI	GRCGYC	1 cut(s)	863
AfaI	GTAC	1 cut(s)	105
AfiI	CCNNNNNNNGG	3 cut(s)	130, 562, 969
AflIII	ACRYGT	1 cut(s)	510
AgsI	TTSAA	5 cut(s)	364, 441, 769, 1028, 1136
AjiI	CACGTC	1 cut(s)	666
AjnI	CCWGG	1 cut(s)	1366
Alw21I	GWGCWC	1 cut(s)	978
AlwI	GGATC	1 cut(s)	1095
AoxI	GGCC	1 cut(s)	947
ApeKI	GCWGC	3 cut(s)	66, 403, 1173
ApoI	RAATTY	4 cut(s)	42, 94, 769, 1156
Asp700I	GAANNNNTTC	2 cut(s)	512, 918
AspLEI	GCGC	3 cut(s)	323, 910, 927
AspS9I	GGNCC	1 cut(s)	127
AsuC2I	CCSGG	2 cut(s)	125, 131
AsuHPI	GGTGA	1 cut(s)	698
AvaII	GGWCC	1 cut(s)	127
BanII	GRGCYC	1 cut(s)	435
Bbv12I	GWGCWC	1 cut(s)	978
BbvI	GCAGC	3 cut(s)	53, 415, 1160
BccI	CCATC	6 cut(s)	238, 356, 799, 829, 1174, 1256
BciT130I	CCWGG	1 cut(s)	1368
BciVI	GTATCC	1 cut(s)	131
BclI	TGATCA	1 cut(s)	3
BcnI	CCSGG	2 cut(s)	125, 131
BfaI	CTAG	4 cut(s)	140, 588, 683, 1247
BfoI	RGCGCY	1 cut(s)	911
BfuI	GTATCC	1 cut(s)	131
BisI	GCNGC	3 cut(s)	67, 404, 1174
BlpI	GCTNAGC	1 cut(s)	1230
BlsI	GCNGC	3 cut(s)	68, 405, 1175
Bme1390I	CCNGG	3 cut(s)	125, 131, 1368
Bme18I	GGWCC	1 cut(s)	127
BmgBI	CACGTC	1 cut(s)	666
BmgT120I	GGNCC	1 cut(s)	127
BmiI	GGNNCC	3 cut(s)	129, 1186, 1365
BmrFI	CCNGG	3 cut(s)	125, 131, 1368
BmsI	GCATC	3 cut(s)	268, 876, 1067
Bpu10I	CCTNAGC	1 cut(s)	617
Bpu1102I	GCTNAGC	1 cut(s)	1230
BpuEI	CTTGAG	1 cut(s)	1133
BpuMI	CCSGG	2 cut(s)	125, 131
BsaHI	GRCGYC	1 cut(s)	863
BsaJI	CCNNGG	3 cut(s)	480, 651, 1253
Bsc4I	CCNNNNNNNGG	3 cut(s)	130, 562, 969
Bse118I	RCCGGY	1 cut(s)	323
Bse1I	ACTGG	3 cut(s)	165, 248, 1296
Bse3DI	GCAATG	2 cut(s)	354, 558
BseBI	CCWGG	1 cut(s)	1368
BseDI	CCNNGG	3 cut(s)	480, 651, 1253
BseLI	CCNNNNNNNGG	3 cut(s)	130, 562, 969
BseMI	GCAATG	2 cut(s)	354, 558
BseMII	CTCAG	2 cut(s)	519, 991
BseNI	ACTGG	3 cut(s)	165, 248, 1296
BseRI	GAGGAG	2 cut(s)	102, 1130
BseXI	GCAGC	3 cut(s)	53, 415, 1160
BseYI	CCCAGC	1 cut(s)	538
BsgI	GTGCAG	1 cut(s)	1025
Bsh1236I	CGCG	2 cut(s)	276, 321
BshFI	GGCC	1 cut(s)	949
BsiHKAI	GWGCWC	1 cut(s)	978
BsiSI	CCGG	4 cut(s)	125, 131, 324, 638
BslFI	GGGAC	1 cut(s)	1012
BslI	CCNNNNNNNGG	3 cut(s)	130, 562, 969
BsmFI	GGGAC	1 cut(s)	1012
BsmI	GAATGC	3 cut(s)	505, 556, 920
BsnI	GGCC	1 cut(s)	949
Bsp1286I	GDGCHC	2 cut(s)	435, 978
Bsp1407I	TGTACA	1 cut(s)	103
Bsp143I	GATC	4 cut(s)	3, 393, 517, 1087
Bsp1720I	GCTNAGC	1 cut(s)	1230
Bsp19I	CCATGG	2 cut(s)	651, 1253
BspACI	CCGC	8 cut(s)	485, 563, 579, 627, 694, 743, 938, 1103
BspANI	GGCC	1 cut(s)	949
BspCNI	CTCAG	2 cut(s)	520, 990
BspFNI	CGCG	2 cut(s)	276, 321
BspLI	GGNNCC	3 cut(s)	129, 1186, 1365
BspPI	GGATC	1 cut(s)	1095
BspQI	GCTCTTC	1 cut(s)	708
BsrBI	CCGCTC	1 cut(s)	1103
BsrDI	GCAATG	2 cut(s)	354, 558
BsrFI	RCCGGY	1 cut(s)	323
BsrGI	TGTACA	1 cut(s)	103
BsrI	ACTGG	3 cut(s)	165, 248, 1296
BssAI	RCCGGY	1 cut(s)	323
BssECI	CCNNGG	3 cut(s)	480, 651, 1253
BssMI	GATC	4 cut(s)	3, 393, 517, 1087
BssNI	GRCGYC	1 cut(s)	863
BssT1I	CCWWGG	3 cut(s)	480, 651, 1253
Bst2UI	CCWGG	1 cut(s)	1368
Bst4CI	ACNGT	3 cut(s)	372, 661, 1003
Bst6I	CTCTTC	1 cut(s)	708
BstACI	GRCGYC	1 cut(s)	863
BstAPI	GCANNNNNTGC	1 cut(s)	1388
BstAUI	TGTACA	1 cut(s)	103
BstC8I	GCNNGC	4 cut(s)	401, 581, 585, 1356
BstDEI	CTNAG	4 cut(s)	528, 617, 977, 1230
BstDSI	CCRYGG	2 cut(s)	651, 1253
BstFNI	CGCG	2 cut(s)	276, 321
BstH2I	RGCGCY	1 cut(s)	911
BstHHI	GCGC	3 cut(s)	323, 910, 927
BstKTI	GATC	4 cut(s)	6, 396, 520, 1090
BstMBI	GATC	4 cut(s)	3, 393, 517, 1087
BstMWI	GCNNNNNNNGC	6 cut(s)	560, 580, 593, 924, 1160, 1388
BstNI	CCWGG	1 cut(s)	1368
BstNSI	RCATGY	2 cut(s)	899, 987
BstSCI	CCNGG	3 cut(s)	123, 129, 1366
BstUI	CGCG	2 cut(s)	276, 321
BstV1I	GCAGC	3 cut(s)	53, 415, 1160
BstX2I	RGATCY	1 cut(s)	1087
BstXI	CCANNNNNNTGG	1 cut(s)	243
BstYI	RGATCY	1 cut(s)	1087
BsuI	GTATCC	1 cut(s)	131
BsuRI	GGCC	1 cut(s)	949
BtgI	CCRYGG	2 cut(s)	651, 1253
BtgZI	GCGATG	1 cut(s)	291
BtrI	CACGTC	1 cut(s)	666
BtsIMutI	CAGTG	4 cut(s)	241, 368, 985, 1008
Cac8I	GCNNGC	4 cut(s)	401, 581, 585, 1356
CfoI	GCGC	3 cut(s)	323, 910, 927
Cfr10I	RCCGGY	1 cut(s)	323
Cfr13I	GGNCC	1 cut(s)	127
CseI	GACGC	1 cut(s)	282
Csp6I	GTAC	1 cut(s)	104
CviAII	CATG	8 cut(s)	652, 896, 928, 956, 984, 992, 1081, 1254
CviQI	GTAC	1 cut(s)	104
DdeI	CTNAG	4 cut(s)	528, 617, 977, 1230
DpnI	GATC	4 cut(s)	5, 395, 519, 1089
DpnII	GATC	4 cut(s)	3, 393, 517, 1087
Eam1104I	CTCTTC	1 cut(s)	708
EarI	CTCTTC	1 cut(s)	708
Eco130I	CCWWGG	3 cut(s)	480, 651, 1253
Eco24I	GRGCYC	1 cut(s)	435
Eco47I	GGWCC	1 cut(s)	127
Eco57I	CTGAAG	1 cut(s)	689
EcoRI	GAATTC	1 cut(s)	769
EcoRII	CCWGG	1 cut(s)	1366
EcoT14I	CCWWGG	3 cut(s)	480, 651, 1253
EcoT22I	ATGCAT	1 cut(s)	1082
EcoT38I	GRGCYC	1 cut(s)	435
ErhI	CCWWGG	3 cut(s)	480, 651, 1253
FaeI	CATG	8 cut(s)	655, 899, 931, 959, 987, 995, 1084, 1257
FalI	AAGNNNNNCTT	2 cut(s)	281, 313
FaqI	GGGAC	1 cut(s)	1012
FatI	CATG	8 cut(s)	651, 895, 927, 955, 983, 991, 1080, 1253
FauI	CCCGC	6 cut(s)	478, 556, 572, 620, 931, 1096
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	3 cut(s)	67, 404, 1174
FriOI	GRGCYC	1 cut(s)	435
Fsp4HI	GCNGC	3 cut(s)	67, 404, 1174
FspBI	CTAG	4 cut(s)	140, 588, 683, 1247
GlaI	GCGC	3 cut(s)	322, 909, 926
GluI	GCNGC	3 cut(s)	67, 404, 1174
GsaI	CCCAGC	1 cut(s)	542
HaeII	RGCGCY	1 cut(s)	911
HaeIII	GGCC	1 cut(s)	949
HapII	CCGG	4 cut(s)	125, 131, 324, 638
HgaI	GACGC	1 cut(s)	282
HhaI	GCGC	3 cut(s)	323, 910, 927
Hin1I	GRCGYC	1 cut(s)	863
Hin1II	CATG	8 cut(s)	655, 899, 931, 959, 987, 995, 1084, 1257
Hin6I	GCGC	3 cut(s)	321, 908, 925
HinP1I	GCGC	3 cut(s)	321, 908, 925
HindIII	AAGCTT	1 cut(s)	8
HinfI	GANTC	2 cut(s)	18, 437
HpaII	CCGG	4 cut(s)	125, 131, 324, 638
HphI	GGTGA	1 cut(s)	698
Hpy166II	GTNNAC	2 cut(s)	304, 861
Hpy188I	TCNGA	3 cut(s)	49, 206, 754
Hpy8I	GTNNAC	2 cut(s)	304, 861
Hpy99I	CGWCG	2 cut(s)	859, 868
HpyAV	CCTTC	2 cut(s)	62, 1033
HpyCH4III	ACNGT	3 cut(s)	372, 661, 1003
HpyCH4IV	ACGT	4 cut(s)	306, 510, 665, 863
HpyF10VI	GCNNNNNNNGC	6 cut(s)	560, 580, 593, 924, 1160, 1388
HpyF3I	CTNAG	4 cut(s)	528, 617, 977, 1230
HpySE526I	ACGT	4 cut(s)	306, 510, 665, 863
Hsp92I	GRCGYC	1 cut(s)	863
Hsp92II	CATG	8 cut(s)	655, 899, 931, 959, 987, 995, 1084, 1257
HspAI	GCGC	3 cut(s)	321, 908, 925
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	4 cut(s)	3, 393, 517, 1087
LguI	GCTCTTC	1 cut(s)	708
LmnI	GCTCC	3 cut(s)	286, 838, 1184
Lsp1109I	GCAGC	3 cut(s)	53, 415, 1160
LweI	GCATC	3 cut(s)	268, 876, 1067
MaeI	CTAG	4 cut(s)	140, 588, 683, 1247
MaeII	ACGT	4 cut(s)	306, 510, 665, 863
MaeIII	GTNAC	7 cut(s)	315, 630, 646, 655, 661, 686, 958
MalI	GATC	4 cut(s)	5, 395, 519, 1089
MbiI	CCGCTC	1 cut(s)	1103
MboI	GATC	4 cut(s)	3, 393, 517, 1087
MboII	GAAGA	6 cut(s)	695, 1026, 1048, 1082, 1148, 1222
MfeI	CAATTG	1 cut(s)	149
MflI	RGATCY	1 cut(s)	1087
MhlI	GDGCHC	2 cut(s)	435, 978
MluCI	AATT	7 cut(s)	42, 94, 149, 157, 212, 769, 1156
MmeI	TCCRAC	1 cut(s)	46
Mph1103I	ATGCAT	1 cut(s)	1082
MroXI	GAANNNNTTC	2 cut(s)	512, 918
MseI	TTAA	1 cut(s)	468
MslI	CAYNNNNRTG	3 cut(s)	717, 894, 900
MspI	CCGG	4 cut(s)	125, 131, 324, 638
MspR9I	CCNGG	3 cut(s)	125, 131, 1368
MunI	CAATTG	1 cut(s)	149
Mva1269I	GAATGC	3 cut(s)	505, 556, 920
MvaI	CCWGG	1 cut(s)	1368
MvnI	CGCG	2 cut(s)	276, 321
MwoI	GCNNNNNNNGC	6 cut(s)	560, 580, 593, 924, 1160, 1388
NciI	CCSGG	2 cut(s)	125, 131
NcoI	CCATGG	2 cut(s)	651, 1253
NdeII	GATC	4 cut(s)	3, 393, 517, 1087
NlaIII	CATG	8 cut(s)	655, 899, 931, 959, 987, 995, 1084, 1257
NlaIV	GGNNCC	3 cut(s)	129, 1186, 1365
NmuCI	GTSAC	5 cut(s)	315, 646, 661, 686, 958
NsiI	ATGCAT	1 cut(s)	1082
NspI	RCATGY	2 cut(s)	899, 987
PciSI	GCTCTTC	1 cut(s)	708
PcsI	WCGNNNNNNNCGW	4 cut(s)	273, 441, 860, 863
PctI	GAATGC	3 cut(s)	505, 556, 920
PdmI	GAANNNNTTC	2 cut(s)	512, 918
PfeI	GAWTC	2 cut(s)	18, 437
PfoI	TCCNGGA	1 cut(s)	123
PkrI	GCNGC	3 cut(s)	68, 405, 1175
Psp6I	CCWGG	1 cut(s)	1366
PspFI	CCCAGC	1 cut(s)	538
PspGI	CCWGG	1 cut(s)	1366
PspN4I	GGNNCC	3 cut(s)	129, 1186, 1365
PspPI	GGNCC	1 cut(s)	127
PsuI	RGATCY	1 cut(s)	1087
RsaI	GTAC	1 cut(s)	105
RsaNI	GTAC	1 cut(s)	104
RseI	CAYNNNNRTG	3 cut(s)	717, 894, 900
SapI	GCTCTTC	1 cut(s)	708
SaqAI	TTAA	1 cut(s)	468
SatI	GCNGC	3 cut(s)	67, 404, 1174
Sau3AI	GATC	4 cut(s)	3, 393, 517, 1087
Sau96I	GGNCC	1 cut(s)	127
ScrFI	CCNGG	3 cut(s)	125, 131, 1368
SduI	GDGCHC	2 cut(s)	435, 978
SfaNI	GCATC	3 cut(s)	268, 876, 1067
SgrAI	CRCCGGYG	1 cut(s)	323
SinI	GGWCC	1 cut(s)	127
SmiMI	CAYNNNNRTG	3 cut(s)	717, 894, 900
SmlI	CTYRAG	1 cut(s)	1112
SmoI	CTYRAG	1 cut(s)	1112
Sse9I	AATT	7 cut(s)	42, 94, 149, 157, 212, 769, 1156
SsiI	CCGC	8 cut(s)	485, 563, 579, 627, 694, 743, 938, 1103
SspMI	CTAG	4 cut(s)	140, 588, 683, 1247
StyD4I	CCNGG	3 cut(s)	123, 129, 1366
StyI	CCWWGG	3 cut(s)	480, 651, 1253
TaaI	ACNGT	3 cut(s)	372, 661, 1003
TaiI	ACGT	4 cut(s)	309, 513, 668, 866
TaqI	TCGA	4 cut(s)	435, 516, 830, 866
TasI	AATT	7 cut(s)	42, 94, 149, 157, 212, 769, 1156
TatI	WGTACW	1 cut(s)	103
TfiI	GAWTC	2 cut(s)	18, 437
Tru1I	TTAA	1 cut(s)	468
Tru9I	TTAA	1 cut(s)	468
TscAI	CASTG	4 cut(s)	248, 375, 985, 1008
TseFI	GTSAC	5 cut(s)	315, 646, 661, 686, 958
TseI	GCWGC	3 cut(s)	66, 403, 1173
Tsp45I	GTSAC	5 cut(s)	315, 646, 661, 686, 958
TspDTI	ATGAA	4 cut(s)	398, 980, 1049, 1163
TspGWI	ACGGA	2 cut(s)	520, 1348
TspRI	CASTG	4 cut(s)	248, 375, 985, 1008
VpaK11BI	GGWCC	1 cut(s)	127
XapI	RAATTY	4 cut(s)	42, 94, 769, 1156
XceI	RCATGY	2 cut(s)	899, 987
XmnI	GAANNNNTTC	2 cut(s)	512, 918
XspI	CTAG	4 cut(s)	140, 588, 683, 1247
ZraI	GACGTC	1 cut(s)	864
Zsp2I	ATGCAT	1 cut(s)	1082

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.