Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006299

Physical Location & Seq

Genomic Coordinates Forward (+)

29012674 .. 29015846

Gene Structure 3173 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G77220.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1455 bp

ATGGAGTGGAGGGGAATCCTCTGCTCGTTGCTTTTTATTGTTTCCGTGGGAGAGTCGTCAAGTAGATTTGGGATAATGTGGCATCCTAATCTTGGTGTTGATTCTGGACAATACTTGACTTGGCCAATCTTAAGTGCTAGTGTATTCGTGGTTATTGCCATCCTCCTCCCCATGTATCTTATCTTTGAGCACTTAGCTTCTTATAATCAACCAGAGGAACAGAAGTTTCTTATTGGACTTATTCTGATGGTTCCTGTTTATGCCGTGGAATCGTTTTTGTCTTTGGTGAATTCAGAAGCAGCTTTCAACTGCGAGGTGATTAGAGATTGTTATGAAGCTTTTGCACTCTATTGTTTCGAGAGATATTTGATAGCTTGCCTAGATGGAGAAGAACGTACAATTGAATTCATGGAACAACAGACAGTTATCACCCAGAGTACTCCTCTTCTAGAAGGCACATGTTCTTATGGGGTTGTAGAGCATCCCTTTCCAATGAACTGCTTCGTAAAAGATTGGAGTCTTGGTCCTCAGTTTTATCATGCTGTGAAAATTGGCATCGTTCAATATATGATACTGAAAATGATTTGTGCTCTGTTAGCAATGATCCTCGAAGCCTTTGGGGTTTATGGAGAAGGGAAGTTCGCATGGAATTATGGATATCCATATCTGGCTGTAGTGCTCAATTTCAGTCAAACATGGGCATTGTATTGCCTTGTACAGTTCTATAATGTCATCAAAGATAAGCTAGCACCCATAAAACCACTGGCCAAGTTTCTAACATTTAAGTCTATTGTATTCCTCACCTGGTGGCAAGGTATTATTGTTGCGTTCCTCTTCTCTATGGGACTCGTCAAAGGGTCTTTGGCTAAGGAACTGAAAACGCGAATACAAGACTACATCATCTGTATCGAAATGGGTATTGCTGCTGTTGTCCATCTCTATGTGTTTCCAGCAGCGCCTTACAAGCGTGGAGAAAGATGTGTTCGTAATGTAGCAGTCATGTCAGATTATGCCTCTATAGATGTACCACCTGATCCAGAAGAGGTTAAAGATAGTGAACGAACAACTAGAACGCGGTATGGTAGACATGACGATAGAGAGAAACGCTTGAATTTCCCACAAAGTGTCCGTGATGTTGTGCTTGGGAGTGGTGAAATCATTGTGGATGACATGAGATTCACAGTTTCACATGTGGTGGAACCGGTTGAAAGAGGAATAGCGAAAATAAACAGAACATTCCATCAGATATCTGAAAATGTGAAAAGATTTGAGCAGCAGAAGAAAACAACAAAGGATGATTCATATGTGATACCACTGAATCAATGGGCGAAAGAATTCTCAGATGTTCATGAAAACCTCTATGATGGAGGGAGTGTGAGCGACAGCGGTTTGGGAAGCACAAATCGGCATCACCAGTCTAGAGTCTCGGGATTGTGGACTAGAATGCGAAGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006996 GO:0007033 GO:0008150 GO:0009705 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016020 GO:0016021 GO:0016043 GO:0016192 GO:0023051 GO:0023057 GO:0031090 GO:0031224 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0065007 GO:0071840 GO:0098588 GO:0098805 GO:0098876 GO:1900457 GO:1900458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Solute_trans_a

Protein Analysis

484

Amino Acids

55.38

Weight (kDa)

6.16

Isoelectric Point (pI)

34.75

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Solute_trans_a	PF03619	44 - 321	2.3e-93	Organic solute transporter Ostalpha

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006299)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77220
fragaria_vesca	FvH4_2g14580 FvH4_2g14580 FvH4_2g14580 FvH4_2g14580 FvH4_2g14580 FvH4_2g14580 FvH4_2g14580 FvH4_2g14580
malus_domestica	MD05G1016800.v1.1 MD10G1016600.v1.1
prunus_persica	Prupe.8G020400_v2.0.a1 Prupe.8G020400_v2.0.a1 Prupe.8G020400_v2.0.a1
pyrus_communis	pycom05g00950 pycom10g01090
rosa_chinensis	RchiOBHm_Chr6g0277041
rosa_laevigata	RLG00000013343
rosa_multiflora	Rmu_sc0000206.1_g000009
rosa_roxburghii	Rroxscaffold_7G00191750
rosa_rugosa	Rorug06G0105600 Rorug06G0105700
rosa_samantha	Rh6AG215700 Rh6BG220400 Rh6CG223200 Rh6DG212800
rosa_wichuraiana	Rw6G018830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	204
AccI	GTMKAC	1 cut(s)	1084
AccII	CGCG	2 cut(s)	883, 1075
AciI	CCGC	2 cut(s)	1075, 1386
AclWI	GGATC	2 cut(s)	598, 1028
AcoI	YGGCCR	2 cut(s)	122, 765
AcsI	RAATTY	4 cut(s)	289, 404, 1111, 1334
AdeI	CACNNNGTG	2 cut(s)	807, 1124
AfaI	GTAC	4 cut(s)	397, 439, 717, 1026
AfiI	CCNNNNNNNGG	1 cut(s)	92
AflII	CTTAAG	1 cut(s)	130
AflIII	ACRYGT	2 cut(s)	458, 1189
AgeI	ACCGGT	1 cut(s)	1201
AgsI	TTSAA	5 cut(s)	307, 404, 563, 1111, 1208
AjnI	CCWGG	1 cut(s)	803
AluBI	AGCT	5 cut(s)	197, 302, 338, 374, 745
AluI	AGCT	5 cut(s)	197, 302, 338, 374, 745
Alw21I	GWGCWC	3 cut(s)	192, 592, 681
Alw26I	GTCTC	1 cut(s)	1429
AlwI	GGATC	2 cut(s)	598, 1028
Ama87I	CYCGRG	1 cut(s)	1426
AoxI	GGCC	2 cut(s)	122, 765
ApeKI	GCWGC	4 cut(s)	299, 923, 953, 1273
ApoI	RAATTY	4 cut(s)	289, 404, 1111, 1334
AsiGI	ACCGGT	1 cut(s)	1201
Asp700I	GAANNNNTTC	2 cut(s)	500, 1334
AspLEI	GCGC	1 cut(s)	958
AspS9I	GGNCC	1 cut(s)	524
AsuHPI	GGTGA	6 cut(s)	298, 328, 421, 793, 1163, 1403
AsuNHI	GCTAGC	1 cut(s)	745
AvaI	CYCGRG	1 cut(s)	1426
AvaII	GGWCC	1 cut(s)	524
BalI	TGGCCA	2 cut(s)	124, 767
Bbv12I	GWGCWC	3 cut(s)	192, 592, 681
BbvI	GCAGC	4 cut(s)	311, 910, 965, 1285
BccI	CCATC	6 cut(s)	167, 241, 377, 942, 1248, 1358
BceAI	ACGGC	1 cut(s)	248
BciT130I	CCWGG	1 cut(s)	805
BcoDI	GTCTC	1 cut(s)	1429
BfaI	CTAG	7 cut(s)	138, 380, 449, 746, 1068, 1419, 1440
BfmI	CTRYAG	2 cut(s)	672, 1017
BfoI	RGCGCY	1 cut(s)	959
BfrI	CTTAAG	1 cut(s)	130
BisI	GCNGC	4 cut(s)	300, 924, 954, 1274
BlsI	GCNGC	4 cut(s)	301, 925, 955, 1275
BmcAI	AGTACT	1 cut(s)	439
Bme1390I	CCNGG	1 cut(s)	805
Bme18I	GGWCC	1 cut(s)	524
BmeT110I	CYCGRG	1 cut(s)	1426
BmgT120I	GGNCC	1 cut(s)	524
BmiI	GGNNCC	2 cut(s)	252, 1200
BmrFI	CCNGG	1 cut(s)	805
BmsI	GCATC	4 cut(s)	91, 490, 564, 1417
BmtI	GCTAGC	1 cut(s)	749
BplI	GAGNNNNNCTC	2 cut(s)	427, 459
Bpu10I	CCTNAGC	1 cut(s)	867
BsaJI	CCNNGG	2 cut(s)	45, 264
BsaWI	WCCGGW	1 cut(s)	1201
BsaXI	ACNNNNNCTCC	4 cut(s)	508, 538, 1359, 1389
Bsc4I	CCNNNNNNNGG	1 cut(s)	92
Bse118I	RCCGGY	1 cut(s)	1201
Bse1I	ACTGG	2 cut(s)	768, 1414
Bse3DI	GCAATG	1 cut(s)	606
BseBI	CCWGG	1 cut(s)	805
BseDI	CCNNGG	2 cut(s)	45, 264
BseGI	GGATG	5 cut(s)	82, 159, 481, 1171, 1300
BseLI	CCNNNNNNNGG	1 cut(s)	92
BseMI	GCAATG	1 cut(s)	606
BseMII	CTCAG	2 cut(s)	542, 1353
BseNI	ACTGG	2 cut(s)	768, 1414
BseRI	GAGGAG	2 cut(s)	155, 432
BseXI	GCAGC	4 cut(s)	311, 910, 965, 1285
Bsh1236I	CGCG	2 cut(s)	883, 1075
BshFI	GGCC	2 cut(s)	124, 767
BshTI	ACCGGT	1 cut(s)	1201
BsiHKAI	GWGCWC	3 cut(s)	192, 592, 681
BsiHKCI	CYCGRG	1 cut(s)	1426
BsiSI	CCGG	1 cut(s)	1202
BslFI	GGGAC	1 cut(s)	858
BslI	CCNNNNNNNGG	1 cut(s)	92
BsmAI	GTCTC	1 cut(s)	1429
BsmFI	GGGAC	1 cut(s)	858
BsmI	GAATGC	1 cut(s)	1449
BsnI	GGCC	2 cut(s)	124, 767
BsoBI	CYCGRG	1 cut(s)	1426
Bsp1286I	GDGCHC	3 cut(s)	192, 592, 681
Bsp1407I	TGTACA	1 cut(s)	715
Bsp143I	GATC	2 cut(s)	603, 1033
BspACI	CCGC	2 cut(s)	1075, 1386
BspANI	GGCC	2 cut(s)	124, 767
BspCNI	CTCAG	2 cut(s)	541, 1352
BspFNI	CGCG	2 cut(s)	883, 1075
BspHI	TCATGA	1 cut(s)	1348
BspLI	GGNNCC	2 cut(s)	252, 1200
BspOI	GCTAGC	1 cut(s)	749
BspPI	GGATC	2 cut(s)	598, 1028
BspTI	CTTAAG	1 cut(s)	130
BsrDI	GCAATG	1 cut(s)	606
BsrFI	RCCGGY	1 cut(s)	1201
BsrGI	TGTACA	1 cut(s)	715
BsrI	ACTGG	2 cut(s)	768, 1414
BssAI	RCCGGY	1 cut(s)	1201
BssECI	CCNNGG	2 cut(s)	45, 264
BssMI	GATC	2 cut(s)	603, 1033
Bst2UI	CCWGG	1 cut(s)	805
Bst4CI	ACNGT	3 cut(s)	424, 720, 1183
Bst6I	CTCTTC	3 cut(s)	450, 839, 1035
BstAFI	CTTAAG	1 cut(s)	130
BstAUI	TGTACA	1 cut(s)	715
BstC8I	GCNNGC	2 cut(s)	376, 747
BstDEI	CTNAG	4 cut(s)	193, 528, 867, 1339
BstDSI	CCRYGG	2 cut(s)	45, 264
BstF5I	GGATG	5 cut(s)	82, 159, 481, 1171, 1300
BstFNI	CGCG	2 cut(s)	883, 1075
BstH2I	RGCGCY	1 cut(s)	959
BstHHI	GCGC	1 cut(s)	958
BstKTI	GATC	2 cut(s)	606, 1036
BstMAI	GTCTC	1 cut(s)	1429
BstMBI	GATC	2 cut(s)	603, 1033
BstMWI	GCNNNNNNNGC	2 cut(s)	596, 964
BstNI	CCWGG	1 cut(s)	805
BstNSI	RCATGY	2 cut(s)	462, 1193
BstSCI	CCNGG	1 cut(s)	803
BstSFI	CTRYAG	2 cut(s)	672, 1017
BstUI	CGCG	2 cut(s)	883, 1075
BstV1I	GCAGC	4 cut(s)	311, 910, 965, 1285
BsuRI	GGCC	2 cut(s)	124, 767
BtgI	CCRYGG	2 cut(s)	45, 264
BtsCI	GGATG	5 cut(s)	82, 159, 481, 1171, 1300
BtsIMutI	CAGTG	2 cut(s)	761, 1313
Cac8I	GCNNGC	2 cut(s)	376, 747
CciI	TCATGA	1 cut(s)	1348
CfoI	GCGC	1 cut(s)	958
Cfr10I	RCCGGY	1 cut(s)	1201
Cfr13I	GGNCC	1 cut(s)	524
CsiI	ACCWGGT	1 cut(s)	803
Csp6I	GTAC	4 cut(s)	396, 438, 716, 1025
CspAI	ACCGGT	1 cut(s)	1201
CviQI	GTAC	4 cut(s)	396, 438, 716, 1025
DdeI	CTNAG	4 cut(s)	193, 528, 867, 1339
DpnI	GATC	2 cut(s)	605, 1035
DpnII	GATC	2 cut(s)	603, 1033
DraIII	CACNNNGTG	2 cut(s)	807, 1124
EaeI	YGGCCR	2 cut(s)	122, 765
Eam1104I	CTCTTC	3 cut(s)	450, 839, 1035
EarI	CTCTTC	3 cut(s)	450, 839, 1035
Eco32I	GATATC	2 cut(s)	659, 1248
Eco47I	GGWCC	1 cut(s)	524
Eco88I	CYCGRG	1 cut(s)	1426
EcoRI	GAATTC	3 cut(s)	289, 404, 1334
EcoRII	CCWGG	1 cut(s)	803
EcoRV	GATATC	2 cut(s)	659, 1248
FaqI	GGGAC	1 cut(s)	858
FauNDI	CATATG	1 cut(s)	1303
FblI	GTMKAC	1 cut(s)	1084
Fnu4HI	GCNGC	4 cut(s)	300, 924, 954, 1274
FokI	GGATG	5 cut(s)	69, 146, 468, 1178, 1307
Fsp4HI	GCNGC	4 cut(s)	300, 924, 954, 1274
FspBI	CTAG	7 cut(s)	138, 380, 449, 746, 1068, 1419, 1440
GlaI	GCGC	1 cut(s)	957
GluI	GCNGC	4 cut(s)	300, 924, 954, 1274
HaeII	RGCGCY	1 cut(s)	959
HaeIII	GGCC	2 cut(s)	124, 767
HapII	CCGG	1 cut(s)	1202
HhaI	GCGC	1 cut(s)	958
Hin6I	GCGC	1 cut(s)	956
HinP1I	GCGC	1 cut(s)	956
HindIII	AAGCTT	1 cut(s)	336
HpaII	CCGG	1 cut(s)	1202
HphI	GGTGA	6 cut(s)	298, 328, 421, 793, 1163, 1403
Hpy166II	GTNNAC	3 cut(s)	1058, 1085, 1437
Hpy188I	TCNGA	6 cut(s)	246, 295, 1006, 1245, 1252, 1342
Hpy188III	TCNNGA	7 cut(s)	105, 358, 449, 1037, 1349, 1419, 1428
Hpy8I	GTNNAC	3 cut(s)	1058, 1085, 1437
HpyAV	CCTTC	3 cut(s)	446, 626, 1443
HpyCH4III	ACNGT	3 cut(s)	424, 720, 1183
HpyCH4IV	ACGT	1 cut(s)	394
HpyCH4V	TGCA	1 cut(s)	344
HpyF10VI	GCNNNNNNNGC	2 cut(s)	596, 964
HpyF3I	CTNAG	4 cut(s)	193, 528, 867, 1339
HpySE526I	ACGT	1 cut(s)	394
HspAI	GCGC	1 cut(s)	956
Kzo9I	GATC	2 cut(s)	603, 1033
Lsp1109I	GCAGC	4 cut(s)	311, 910, 965, 1285
LweI	GCATC	4 cut(s)	91, 490, 564, 1417
MabI	ACCWGGT	1 cut(s)	803
MaeI	CTAG	7 cut(s)	138, 380, 449, 746, 1068, 1419, 1440
MaeII	ACGT	1 cut(s)	394
MalI	GATC	2 cut(s)	605, 1035
MboI	GATC	2 cut(s)	603, 1033
MboII	GAAGA	5 cut(s)	401, 437, 826, 1052, 1291
MfeI	CAATTG	1 cut(s)	399
MhlI	GDGCHC	3 cut(s)	192, 592, 681
MlsI	TGGCCA	2 cut(s)	124, 767
MluCI	AATT	8 cut(s)	289, 399, 404, 549, 649, 682, 1111, 1334
MluNI	TGGCCA	2 cut(s)	124, 767
MlyI	GAGTC	4 cut(s)	62, 526, 840, 1431
Mox20I	TGGCCA	2 cut(s)	124, 767
MroXI	GAANNNNTTC	2 cut(s)	500, 1334
MscI	TGGCCA	2 cut(s)	124, 767
MseI	TTAA	3 cut(s)	131, 783, 1047
MslI	CAYNNNNRTG	1 cut(s)	939
Msp20I	TGGCCA	2 cut(s)	124, 767
MspA1I	CMGCKG	1 cut(s)	1386
MspCI	CTTAAG	1 cut(s)	130
MspI	CCGG	1 cut(s)	1202
MspR9I	CCNGG	1 cut(s)	805
MunI	CAATTG	1 cut(s)	399
Mva1269I	GAATGC	1 cut(s)	1449
MvaI	CCWGG	1 cut(s)	805
MvnI	CGCG	2 cut(s)	883, 1075
MwoI	GCNNNNNNNGC	2 cut(s)	596, 964
NdeI	CATATG	1 cut(s)	1303
NdeII	GATC	2 cut(s)	603, 1033
NheI	GCTAGC	1 cut(s)	745
NlaIV	GGNNCC	2 cut(s)	252, 1200
NspI	RCATGY	2 cut(s)	462, 1193
PagI	TCATGA	1 cut(s)	1348
PciI	ACATGT	2 cut(s)	458, 1189
PctI	GAATGC	1 cut(s)	1449
PdmI	GAANNNNTTC	2 cut(s)	500, 1334
PfeI	GAWTC	6 cut(s)	15, 101, 269, 1176, 1298, 1318
PinAI	ACCGGT	1 cut(s)	1201
PkrI	GCNGC	4 cut(s)	301, 925, 955, 1275
PleI	GAGTC	4 cut(s)	61, 525, 840, 1430
PpsI	GAGTC	4 cut(s)	61, 525, 840, 1430
PscI	ACATGT	2 cut(s)	458, 1189
PsiI	TTATAA	1 cut(s)	204
Psp6I	CCWGG	1 cut(s)	803
PspGI	CCWGG	1 cut(s)	803
PspN4I	GGNNCC	2 cut(s)	252, 1200
PspPI	GGNCC	1 cut(s)	524
RsaI	GTAC	4 cut(s)	397, 439, 717, 1026
RsaNI	GTAC	4 cut(s)	396, 438, 716, 1025
RseI	CAYNNNNRTG	1 cut(s)	939
SaqAI	TTAA	3 cut(s)	131, 783, 1047
SatI	GCNGC	4 cut(s)	300, 924, 954, 1274
Sau3AI	GATC	2 cut(s)	603, 1033
Sau96I	GGNCC	1 cut(s)	524
ScaI	AGTACT	1 cut(s)	439
SchI	GAGTC	4 cut(s)	62, 526, 840, 1431
ScrFI	CCNGG	1 cut(s)	805
SduI	GDGCHC	3 cut(s)	192, 592, 681
SexAI	ACCWGGT	1 cut(s)	803
SfaNI	GCATC	4 cut(s)	91, 490, 564, 1417
SfcI	CTRYAG	2 cut(s)	672, 1017
SinI	GGWCC	1 cut(s)	524
SmiMI	CAYNNNNRTG	1 cut(s)	939
SmlI	CTYRAG	1 cut(s)	130
SmoI	CTYRAG	1 cut(s)	130
Sse9I	AATT	8 cut(s)	289, 399, 404, 549, 649, 682, 1111, 1334
SsiI	CCGC	2 cut(s)	1075, 1386
SspMI	CTAG	7 cut(s)	138, 380, 449, 746, 1068, 1419, 1440
StyD4I	CCNGG	1 cut(s)	803
TaaI	ACNGT	3 cut(s)	424, 720, 1183
TaiI	ACGT	1 cut(s)	397
TaqI	TCGA	3 cut(s)	357, 609, 909
TasI	AATT	8 cut(s)	289, 399, 404, 549, 649, 682, 1111, 1334
TatI	WGTACW	2 cut(s)	437, 715
TfiI	GAWTC	6 cut(s)	15, 101, 269, 1176, 1298, 1318
Tru1I	TTAA	3 cut(s)	131, 783, 1047
Tru9I	TTAA	3 cut(s)	131, 783, 1047
TscAI	CASTG	2 cut(s)	768, 1320
TseI	GCWGC	4 cut(s)	299, 923, 953, 1273
TspDTI	ATGAA	6 cut(s)	348, 397, 509, 1290, 1337, 1365
TspGWI	ACGGA	2 cut(s)	34, 1118
TspRI	CASTG	2 cut(s)	768, 1320
Vha464I	CTTAAG	1 cut(s)	130
VpaK11BI	GGWCC	1 cut(s)	524
XapI	RAATTY	4 cut(s)	289, 404, 1111, 1334
XbaI	TCTAGA	2 cut(s)	448, 1418
XceI	RCATGY	2 cut(s)	462, 1193
XcmI	CCANNNNNNNNNTGG	2 cut(s)	760, 1320
XmiI	GTMKAC	1 cut(s)	1084
XmnI	GAANNNNTTC	2 cut(s)	500, 1334
XspI	CTAG	7 cut(s)	138, 380, 449, 746, 1068, 1419, 1440
ZrmI	AGTACT	1 cut(s)	439

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.