Rorug06G0105700

Organic solute transporter Ostalpha

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
Physical Location & Seq
Reverse (-)
14223422 .. 14226976
3555 bp
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UTR
Exon/CDS
Intron
Rorug06G0105700.1

Sequence Viewer

Length: 309 bp
ATGGGAGAGTTTAATCGATCTTCATGGAATTATTGCCCCAGTCAATCTCTTCTGCAAATGGAAGCAAACCACGAGGTCCCATCAAGTCCTGTCCTTTCCTGTCCTTTTAGCCTTAATCATGGTGAAGAAAGAGCAGCAAGACGGAAAGAGTTCTTTGAGAGGCTGGAAGAAAAGAAAAGTGGAGAGGCAGAAAGTAAGCAGCTGCAAATGAGAGATCTAACAGGATGCTTAAAGGAGATCCACCACTTTCAAATTACGAGCCTCATGAAACAGCCAAATTTGTTGCAAAAGGACACACCCCTGAACTGA

Protein Analysis

102

Amino Acids

11.82

Weight (kDa)

6.41

Isoelectric Point (pI)

72.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 232
AcsI RAATTY 1 cut(s) 277
AgsI TTSAA 1 cut(s) 251
AluBI AGCT 1 cut(s) 202
AluI AGCT 1 cut(s) 202
AlwI GGATC 1 cut(s) 232
ApeKI GCWGC 3 cut(s) 134, 199, 202
ApoI RAATTY 1 cut(s) 277
Asp700I GAANNNNTTC 1 cut(s) 149
AspS9I GGNCC 1 cut(s) 76
AsuHPI GGTGA 1 cut(s) 134
AvaII GGWCC 1 cut(s) 76
BauI CACGAG 1 cut(s) 71
BbvI GCAGC 3 cut(s) 146, 189, 211
BccI CCATC 1 cut(s) 88
BglII AGATCT 1 cut(s) 214
BisI GCNGC 3 cut(s) 135, 200, 203
BlsI GCNGC 3 cut(s) 136, 201, 204
Bme18I GGWCC 1 cut(s) 76
BmgT120I GGNCC 1 cut(s) 76
BmiI GGNNCC 1 cut(s) 78
BmrI ACTGGG 1 cut(s) 33
BmsI GCATC 1 cut(s) 215
BmuI ACTGGG 1 cut(s) 33
Bsa29I ATCGAT 1 cut(s) 16
Bse1I ACTGG 1 cut(s) 39
BseCI ATCGAT 1 cut(s) 16
BseGI GGATG 1 cut(s) 230
BseNI ACTGG 1 cut(s) 39
BseXI GCAGC 3 cut(s) 146, 189, 211
BshVI ATCGAT 1 cut(s) 16
BslFI GGGAC 1 cut(s) 62
BsmFI GGGAC 1 cut(s) 62
Bsp143I GATC 3 cut(s) 17, 214, 237
BspDI ATCGAT 1 cut(s) 16
BspHI TCATGA 1 cut(s) 264
BspLI GGNNCC 1 cut(s) 78
BspPI GGATC 1 cut(s) 232
BsrI ACTGG 1 cut(s) 39
BssMI GATC 3 cut(s) 17, 214, 237
BssSI CACGAG 1 cut(s) 71
Bst2BI CACGAG 1 cut(s) 71
Bst6I CTCTTC 1 cut(s) 54
BstF5I GGATG 1 cut(s) 230
BstKTI GATC 3 cut(s) 20, 217, 240
BstMBI GATC 3 cut(s) 17, 214, 237
BstV1I GCAGC 3 cut(s) 146, 189, 211
BstX2I RGATCY 2 cut(s) 214, 237
BstYI RGATCY 2 cut(s) 214, 237
Bsu15I ATCGAT 1 cut(s) 16
BsuTUI ATCGAT 1 cut(s) 16
BtsCI GGATG 1 cut(s) 230
CciI TCATGA 1 cut(s) 264
Cfr13I GGNCC 1 cut(s) 76
ClaI ATCGAT 1 cut(s) 16
CviAII CATG 3 cut(s) 24, 119, 265
CviJI RGCY 5 cut(s) 111, 163, 202, 261, 274
CviKI_1 RGCY 5 cut(s) 111, 163, 202, 261, 274
DpnI GATC 3 cut(s) 19, 216, 239
DpnII GATC 3 cut(s) 17, 214, 237
Eam1104I CTCTTC 1 cut(s) 54
EarI CTCTTC 1 cut(s) 54
Eco47I GGWCC 1 cut(s) 76
EcoO109I RGGNCCY 1 cut(s) 76
FaeI CATG 3 cut(s) 27, 122, 268
FaiI YATR 3 cut(s) 25, 120, 266
FaqI GGGAC 1 cut(s) 62
FatI CATG 3 cut(s) 23, 118, 264
Fnu4HI GCNGC 3 cut(s) 135, 200, 203
FokI GGATG 1 cut(s) 237
Fsp4HI GCNGC 3 cut(s) 135, 200, 203
GluI GCNGC 3 cut(s) 135, 200, 203
Hin1II CATG 3 cut(s) 27, 122, 268
HphI GGTGA 1 cut(s) 134
Hpy188III TCNNGA 1 cut(s) 265
HpyCH4V TGCA 3 cut(s) 55, 205, 286
Hsp92II CATG 3 cut(s) 27, 122, 268
Kzo9I GATC 3 cut(s) 17, 214, 237
LpnPI CCDG 5 cut(s) 52, 102, 112, 149, 207
Lsp1109I GCAGC 3 cut(s) 146, 189, 211
LweI GCATC 1 cut(s) 215
MalI GATC 3 cut(s) 19, 216, 239
MboI GATC 3 cut(s) 17, 214, 237
MboII GAAGA 4 cut(s) 12, 41, 137, 179
MflI RGATCY 2 cut(s) 214, 237
MluCI AATT 3 cut(s) 28, 252, 277
MnlI CCTC 4 cut(s) 67, 153, 178, 272
MroXI GAANNNNTTC 1 cut(s) 149
MseI TTAA 3 cut(s) 12, 114, 230
MspA1I CMGCKG 1 cut(s) 202
NdeII GATC 3 cut(s) 17, 214, 237
NlaIII CATG 3 cut(s) 27, 122, 268
NlaIV GGNNCC 1 cut(s) 78
PagI TCATGA 1 cut(s) 264
PdmI GAANNNNTTC 1 cut(s) 149
PkrI GCNGC 3 cut(s) 136, 201, 204
PpuMI RGGWCCY 1 cut(s) 76
Psp5II RGGWCCY 1 cut(s) 76
PspN4I GGNNCC 1 cut(s) 78
PspPI GGNCC 1 cut(s) 76
PspPPI RGGWCCY 1 cut(s) 76
PsuI RGATCY 2 cut(s) 214, 237
PvuII CAGCTG 1 cut(s) 202
SaqAI TTAA 3 cut(s) 12, 114, 230
SatI GCNGC 3 cut(s) 135, 200, 203
Sau3AI GATC 3 cut(s) 17, 214, 237
Sau96I GGNCC 1 cut(s) 76
SetI ASST 2 cut(s) 78, 204
SfaNI GCATC 1 cut(s) 215
SinI GGWCC 1 cut(s) 76
Sse9I AATT 3 cut(s) 28, 252, 277
TaqI TCGA 1 cut(s) 16
TasI AATT 3 cut(s) 28, 252, 277
Tru1I TTAA 3 cut(s) 12, 114, 230
Tru9I TTAA 3 cut(s) 12, 114, 230
TseI GCWGC 3 cut(s) 134, 199, 202
TspDTI ATGAA 2 cut(s) 12, 281
TspGWI ACGGA 1 cut(s) 157
VpaK11BI GGWCC 1 cut(s) 76
XapI RAATTY 1 cut(s) 277
XmnI GAANNNNTTC 1 cut(s) 149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.