RchiOBHm_Chr6g0277041

Organic solute transporter Ostalpha

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0006299
Physical Location & Seq
Reverse (-)
39365197 .. 39371176
5980 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24852

Sequence Viewer

Length: 1452 bp
ATGGGATGGAGGGGCAGGTTATGTTCTTCCTTTTTCCTTTTCACTTTGGTCTCCTCCAGCAGAGTAGGAGACATGTGGCCTGTCAATCTCAGTGCTGAATCTGCCGTAGCCATCAGCTGGCCAATCCTCAGTGCGAGCATGTTCGTACTAGTTGCACTGTTTCTCTCCATGTATCTTATCTTCGAGCACTTAGCTGCCTATAATCAGCCAGAGGAGCAGAAGTTTTTGATTGGGCTTATTCTGATGGTTCCTGTTTATGCCCTAGAATCATTTGTGTCACTGTTGGACTCAAATGCTGCTTTCAACTGGGAAGCAATCCGGGACTGCTACGAGGCCTTTGCATTATATTGTTTTGAGAGATACTTGATAGCCTGCTTAGGTGGTGAGAAGCGTACAATTGAATTTATGGAGAGTCAGAGCATAGTCGATTCGAGCACTCCTCTTTTGAAAGAAGAATACGCTTATGGAGTTGTTGAACATCCTTTCCCACTGAATTGCTTTATAAGAGACTGGGATCTTGGTCCAGCATTCTATCATGCTGTGAAAGTAGGCATCGTTCAGTATATGATACTGAAATTGATCTGCGCTCTGCTAGCCATGATTCTTCAAAGTTTTGGTGTTTATGGAGAAGGAAAGTTTGACTGGAGATATGGCTACCCTTACTTGGCAGTTGTTCTTAACTTTAGTCAGACATGGGCCCTATACTGCCTTGTGCAGTTCTATTCTGTCATTAAGGACAAACTACAACCTATTAAACCACTGGCGAAGTTTCTAACTTTTAAGTCAATTGTATTCTTGACATGGTGGCAAGGTGTTGCTGTTGCGTTTCTTTTCTCTATGGGTGCCTTTAAAGGGGCCTTGGCGCAGGAGCTGAAAACCCGCATACAAGATTACATCATATGCATAGAGATGGGTGTTGCTGCGGTGGTCCACCTATATGTCTTCCCGGCAGTACCTTACAAACGTGGAGAAAGATGTGTTCGCAATGTTGCTGTGATGGCTGACTATGCATCACTAGGAGCGCCTCCCGATCCAGAGGAGGTTCGTGATTGTGAAAGATCAACAAGAATTCATCTACAACGGCATGATGAGAGAGAAAAGCGCTTGAATTTCCCCCAGAGTGTTCGTGACGTGATTTTTGGAAGTGGAGAAATTATTGTTGATGACATGAAGTATACAGTTTCGCATGTGGTAGAACCAGTTGAAAGAGGATTTGCAAAGATAAATAAAACCTTGCATCAGATATCTGAGAATGTGAAACGCCACGAGGAGCAGAGGAGGAGTGCCAAGGATGATAGTTATCTTATCCCCTTGAGTTCATGGAACAGAGAATTTTCTGAAGTCCATGAGAATCTTGTTGAAGGGAGTGTCAGTGACAGTGGTTTGTCCAGTGGGAGGAGACAGCACACCCAGTCTAAAGCTTCAACTTCTCGTCCAAGAGCAGGGAGATGA

Protein Analysis

483

Amino Acids

55.08

Weight (kDa)

6.61

Isoelectric Point (pI)

44.4

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Solute_trans_a PF03619 43 - 320 2.6e-91 Organic solute transporter Ostalpha
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 503
Acc36I ACCTGC 1 cut(s) 6
AccB1I GGYRCC 1 cut(s) 842
AccB7I CCANNNNNTGG 1 cut(s) 117
AccI GTMKAC 1 cut(s) 1175
AciI CCGC 2 cut(s) 880, 923
AclWI GGATC 2 cut(s) 522, 1025
AcoI YGGCCR 1 cut(s) 119
AcsI RAATTY 4 cut(s) 401, 1068, 1108, 1331
AcuI CTGAAG 1 cut(s) 1359
AfaI GTAC 3 cut(s) 147, 394, 954
AfeI AGCGCT 1 cut(s) 1103
AfiI CCNNNNNNNGG 5 cut(s) 117, 664, 852, 1395, 1442
AflIII ACRYGT 1 cut(s) 72
AgsI TTSAA 9 cut(s) 304, 401, 448, 476, 608, 1108, 1205, 1361, 1425
AhlI ACTAGT 1 cut(s) 148
AjiI CACGTC 1 cut(s) 1132
AloI GAACNNNNNNTCC 2 cut(s) 468, 500
AluBI AGCT 4 cut(s) 117, 194, 871, 1421
AluI AGCT 4 cut(s) 117, 194, 871, 1421
Alw21I GWGCWC 2 cut(s) 189, 437
Alw26I GTCTC 4 cut(s) 55, 63, 501, 1393
AlwI GGATC 2 cut(s) 522, 1025
AlwNI CAGNNNCTG 1 cut(s) 871
Aor51HI AGCGCT 1 cut(s) 1103
AoxI GGCC 5 cut(s) 77, 119, 333, 696, 855
ApaI GGGCCC 1 cut(s) 700
ApeKI GCWGC 3 cut(s) 194, 296, 920
ApoI RAATTY 4 cut(s) 401, 1068, 1108, 1331
ArsI GACNNNNNNTTYG 2 cut(s) 1121, 1153
AspLEI GCGC 4 cut(s) 587, 865, 1024, 1104
AspS9I GGNCC 5 cut(s) 521, 696, 697, 855, 928
AsuC2I CCSGG 2 cut(s) 320, 947
AsuHPI GGTGA 1 cut(s) 395
AsuNHI GCTAGC 1 cut(s) 592
AvaII GGWCC 2 cut(s) 521, 928
BaeGI GKGCMC 1 cut(s) 700
BalI TGGCCA 1 cut(s) 121
BanI GGYRCC 1 cut(s) 842
BanII GRGCYC 1 cut(s) 700
BarI GAAGNNNNNNTAC 2 cut(s) 164, 196
BauI CACGAG 1 cut(s) 1265
BbsI GAAGAC 1 cut(s) 934
Bbv12I GWGCWC 2 cut(s) 189, 437
BbvI GCAGC 3 cut(s) 181, 283, 907
BccI CCATC 4 cut(s) 119, 238, 904, 991
BceAI ACGGC 2 cut(s) 89, 1097
BcgI CGANNNNNNTGC 2 cut(s) 320, 354
BcnI CCSGG 2 cut(s) 320, 947
BcoDI GTCTC 4 cut(s) 55, 63, 501, 1393
BcuI ACTAGT 1 cut(s) 148
BfaI CTAG 4 cut(s) 149, 263, 593, 1016
BfoI RGCGCY 2 cut(s) 1025, 1105
BfuAI ACCTGC 1 cut(s) 6
BisI GCNGC 3 cut(s) 195, 297, 921
BlsI GCNGC 3 cut(s) 196, 298, 922
Bme1390I CCNGG 2 cut(s) 320, 947
Bme18I GGWCC 2 cut(s) 521, 928
BmgBI CACGTC 1 cut(s) 1132
BmgT120I GGNCC 5 cut(s) 521, 696, 697, 855, 928
BmiI GGNNCC 4 cut(s) 249, 698, 844, 856
BmrFI CCNGG 2 cut(s) 320, 947
BmrI ACTGGG 3 cut(s) 316, 520, 1405
BmsI GCATC 3 cut(s) 561, 1019, 1246
BmtI GCTAGC 1 cut(s) 596
BmuI ACTGGG 3 cut(s) 316, 520, 1405
BpiI GAAGAC 1 cut(s) 934
BplI GAGNNNNNCTC 2 cut(s) 424, 456
BpmI CTGGAG 2 cut(s) 40, 664
Bpu10I CCTNAGC 1 cut(s) 376
BpuEI CTTGAG 1 cut(s) 1333
BpuMI CCSGG 2 cut(s) 320, 947
BsaBI GATNNNNATC 1 cut(s) 1299
BsaI GGTCTC 1 cut(s) 55
BsaJI CCNNGG 2 cut(s) 858, 1287
BsaXI ACNNNNNCTCC 4 cut(s) 206, 236, 1357, 1387
Bsc4I CCNNNNNNNGG 5 cut(s) 117, 664, 852, 1395, 1442
Bse1I ACTGG 7 cut(s) 311, 515, 647, 765, 1199, 1389, 1411
Bse3DI GCAATG 1 cut(s) 991
Bse8I GATNNNNATC 1 cut(s) 1299
BseDI CCNNGG 2 cut(s) 858, 1287
BseGI GGATG 3 cut(s) 11, 478, 1297
BseJI GATNNNNATC 1 cut(s) 1299
BseLI CCNNNNNNNGG 5 cut(s) 117, 664, 852, 1395, 1442
BseMI GCAATG 1 cut(s) 991
BseMII CTCAG 3 cut(s) 103, 142, 1239
BseNI ACTGG 7 cut(s) 311, 515, 647, 765, 1199, 1389, 1411
BseRI GAGGAG 8 cut(s) 43, 227, 429, 1052, 1283, 1291, 1294, 1411
BseSI GKGCMC 1 cut(s) 700
BseXI GCAGC 3 cut(s) 181, 283, 907
BsgI GTGCAG 1 cut(s) 734
BshFI GGCC 5 cut(s) 79, 121, 335, 698, 857
BshNI GGYRCC 1 cut(s) 842
BsiHKAI GWGCWC 2 cut(s) 189, 437
BsiSI CCGG 2 cut(s) 319, 947
BslFI GGGAC 1 cut(s) 335
BslI CCNNNNNNNGG 5 cut(s) 117, 664, 852, 1395, 1442
BsmAI GTCTC 4 cut(s) 55, 63, 501, 1393
BsmFI GGGAC 1 cut(s) 335
BsmI GAATGC 1 cut(s) 527
BsnI GGCC 5 cut(s) 79, 121, 335, 698, 857
Bso31I GGTCTC 1 cut(s) 55
Bsp120I GGGCCC 1 cut(s) 696
Bsp1286I GDGCHC 3 cut(s) 189, 437, 700
Bsp143I GATC 4 cut(s) 514, 579, 1030, 1058
BspACI CCGC 2 cut(s) 880, 923
BspANI GGCC 5 cut(s) 79, 121, 335, 698, 857
BspCNI CTCAG 3 cut(s) 102, 141, 1240
BspLI GGNNCC 4 cut(s) 249, 698, 844, 856
BspMI ACCTGC 1 cut(s) 6
BspOI GCTAGC 1 cut(s) 596
BspPI GGATC 2 cut(s) 522, 1025
BspT107I GGYRCC 1 cut(s) 842
BspTNI GGTCTC 1 cut(s) 55
BsrDI GCAATG 1 cut(s) 991
BsrI ACTGG 7 cut(s) 311, 515, 647, 765, 1199, 1389, 1411
BssECI CCNNGG 2 cut(s) 858, 1287
BssMI GATC 4 cut(s) 514, 579, 1030, 1058
BssNAI GTATAC 1 cut(s) 1176
BssSI CACGAG 1 cut(s) 1265
BssT1I CCWWGG 2 cut(s) 858, 1287
Bst1107I GTATAC 1 cut(s) 1176
Bst2BI CACGAG 1 cut(s) 1265
Bst4CI ACNGT 4 cut(s) 159, 282, 1180, 1379
BstC8I GCNNGC 4 cut(s) 119, 136, 373, 594
BstDEI CTNAG 5 cut(s) 89, 128, 190, 376, 1248
BstF5I GGATG 3 cut(s) 11, 478, 1297
BstH2I RGCGCY 2 cut(s) 1025, 1105
BstHHI GCGC 4 cut(s) 587, 865, 1024, 1104
BstKTI GATC 4 cut(s) 517, 582, 1033, 1061
BstMAI GTCTC 4 cut(s) 55, 63, 501, 1393
BstMBI GATC 4 cut(s) 514, 579, 1030, 1058
BstMWI GCNNNNNNNGC 5 cut(s) 101, 214, 593, 998, 1007
BstNSI RCATGY 3 cut(s) 76, 142, 1190
BstSCI CCNGG 2 cut(s) 318, 945
BstSLI GKGCMC 1 cut(s) 700
BstV1I GCAGC 3 cut(s) 181, 283, 907
BstV2I GAAGAC 1 cut(s) 934
BstX2I RGATCY 1 cut(s) 514
BstYI RGATCY 1 cut(s) 514
BstZ17I GTATAC 1 cut(s) 1176
BsuRI GGCC 5 cut(s) 79, 121, 335, 698, 857
BtrI CACGTC 1 cut(s) 1132
BtsCI GGATG 3 cut(s) 11, 478, 1297
BtsIMutI CAGTG 9 cut(s) 97, 136, 155, 278, 488, 758, 1378, 1384, 1396
BveI ACCTGC 1 cut(s) 6
Cac8I GCNNGC 4 cut(s) 119, 136, 373, 594
CaiI CAGNNNCTG 1 cut(s) 871
CfoI GCGC 4 cut(s) 587, 865, 1024, 1104
Cfr13I GGNCC 5 cut(s) 521, 696, 697, 855, 928
Csp6I GTAC 3 cut(s) 146, 393, 953
CviQI GTAC 3 cut(s) 146, 393, 953
DdeI CTNAG 5 cut(s) 89, 128, 190, 376, 1248
DpnI GATC 4 cut(s) 516, 581, 1032, 1060
DpnII GATC 4 cut(s) 514, 579, 1030, 1058
DraI TTTAAA 1 cut(s) 850
EaeI YGGCCR 1 cut(s) 119
Eco130I CCWWGG 2 cut(s) 858, 1287
Eco147I AGGCCT 1 cut(s) 335
Eco24I GRGCYC 1 cut(s) 700
Eco31I GGTCTC 1 cut(s) 55
Eco32I GATATC 1 cut(s) 1245
Eco47I GGWCC 2 cut(s) 521, 928
Eco47III AGCGCT 1 cut(s) 1103
Eco57I CTGAAG 1 cut(s) 1359
EcoO109I RGGNCCY 2 cut(s) 697, 855
EcoRI GAATTC 1 cut(s) 1068
EcoRV GATATC 1 cut(s) 1245
EcoT14I CCWWGG 2 cut(s) 858, 1287
EcoT22I ATGCAT 2 cut(s) 905, 1012
EcoT38I GRGCYC 1 cut(s) 700
ErhI CCWWGG 2 cut(s) 858, 1287
FaqI GGGAC 1 cut(s) 335
FauI CCCGC 1 cut(s) 887
FauNDI CATATG 1 cut(s) 899
FblI GTMKAC 1 cut(s) 1175
Fnu4HI GCNGC 3 cut(s) 195, 297, 921
FokI GGATG 3 cut(s) 18, 465, 1304
FriOI GRGCYC 1 cut(s) 700
Fsp4HI GCNGC 3 cut(s) 195, 297, 921
FspBI CTAG 4 cut(s) 149, 263, 593, 1016
GlaI GCGC 4 cut(s) 586, 864, 1023, 1103
GluI GCNGC 3 cut(s) 195, 297, 921
GsuI CTGGAG 2 cut(s) 40, 664
HaeII RGCGCY 2 cut(s) 1025, 1105
HaeIII GGCC 5 cut(s) 79, 121, 335, 698, 857
HapII CCGG 2 cut(s) 319, 947
HhaI GCGC 4 cut(s) 587, 865, 1024, 1104
Hin6I GCGC 4 cut(s) 585, 863, 1022, 1102
HinP1I GCGC 4 cut(s) 585, 863, 1022, 1102
HindIII AAGCTT 1 cut(s) 1419
HinfI GANTC 7 cut(s) 98, 266, 287, 412, 428, 601, 1351
HpaII CCGG 2 cut(s) 319, 947
HphI GGTGA 1 cut(s) 395
Hpy166II GTNNAC 2 cut(s) 931, 1176
Hpy188I TCNGA 6 cut(s) 243, 417, 690, 1242, 1249, 1339
Hpy188III TCNNGA 5 cut(s) 796, 1028, 1034, 1046, 1127
Hpy8I GTNNAC 2 cut(s) 931, 1176
HpyAV CCTTC 2 cut(s) 623, 1355
HpyCH4III ACNGT 4 cut(s) 159, 282, 1180, 1379
HpyCH4IV ACGT 2 cut(s) 964, 1131
HpyCH4V TGCA 7 cut(s) 155, 341, 715, 903, 1010, 1217, 1237
HpyF10VI GCNNNNNNNGC 5 cut(s) 101, 214, 593, 998, 1007
HpyF3I CTNAG 5 cut(s) 89, 128, 190, 376, 1248
HpySE526I ACGT 2 cut(s) 964, 1131
HspAI GCGC 4 cut(s) 585, 863, 1022, 1102
Kzo9I GATC 4 cut(s) 514, 579, 1030, 1058
LmnI GCTCC 4 cut(s) 214, 868, 1019, 1270
Lsp1109I GCAGC 3 cut(s) 181, 283, 907
LweI GCATC 3 cut(s) 561, 1019, 1246
MaeI CTAG 4 cut(s) 149, 263, 593, 1016
MaeII ACGT 2 cut(s) 964, 1131
MaeIII GTNAC 3 cut(s) 276, 1127, 1373
MalI GATC 4 cut(s) 516, 581, 1032, 1060
MboI GATC 4 cut(s) 514, 579, 1030, 1058
MboII GAAGA 5 cut(s) 18, 172, 464, 596, 934
MfeI CAATTG 2 cut(s) 396, 786
MflI RGATCY 1 cut(s) 514
MhlI GDGCHC 3 cut(s) 189, 437, 700
MlsI TGGCCA 1 cut(s) 121
MluCI AATT 9 cut(s) 396, 401, 493, 575, 786, 1068, 1108, 1152, 1331
MluNI TGGCCA 1 cut(s) 121
MlyI GAGTC 2 cut(s) 281, 421
MmeI TCCRAC 1 cut(s) 264
Mox20I TGGCCA 1 cut(s) 121
Mph1103I ATGCAT 2 cut(s) 905, 1012
MscI TGGCCA 1 cut(s) 121
MseI TTAA 5 cut(s) 678, 732, 753, 780, 849
MslI CAYNNNNRTG 2 cut(s) 908, 936
Msp20I TGGCCA 1 cut(s) 121
MspA1I CMGCKG 1 cut(s) 117
MspI CCGG 2 cut(s) 319, 947
MspR9I CCNGG 2 cut(s) 320, 947
MunI CAATTG 2 cut(s) 396, 786
Mva1269I GAATGC 1 cut(s) 527
MwoI GCNNNNNNNGC 5 cut(s) 101, 214, 593, 998, 1007
NciI CCSGG 2 cut(s) 320, 947
NdeI CATATG 1 cut(s) 899
NdeII GATC 4 cut(s) 514, 579, 1030, 1058
NheI GCTAGC 1 cut(s) 592
NlaIV GGNNCC 4 cut(s) 249, 698, 844, 856
NmuCI GTSAC 3 cut(s) 276, 1127, 1373
NsiI ATGCAT 2 cut(s) 905, 1012
NspI RCATGY 3 cut(s) 76, 142, 1190
PceI AGGCCT 1 cut(s) 335
PciI ACATGT 1 cut(s) 72
PctI GAATGC 1 cut(s) 527
PfeI GAWTC 5 cut(s) 98, 266, 428, 601, 1351
PflMI CCANNNNNTGG 1 cut(s) 117
PfoI TCCNGGA 1 cut(s) 318
PkrI GCNGC 3 cut(s) 196, 298, 922
PleI GAGTC 2 cut(s) 281, 420
PpsI GAGTC 2 cut(s) 281, 420
PscI ACATGT 1 cut(s) 72
PsiI TTATAA 1 cut(s) 503
PspN4I GGNNCC 4 cut(s) 249, 698, 844, 856
PspOMI GGGCCC 1 cut(s) 696
PspPI GGNCC 5 cut(s) 521, 696, 697, 855, 928
PsrI GAACNNNNNNTAC 2 cut(s) 540, 572
PstNI CAGNNNCTG 1 cut(s) 871
PsuI RGATCY 1 cut(s) 514
PvuII CAGCTG 1 cut(s) 117
RsaI GTAC 3 cut(s) 147, 394, 954
RsaNI GTAC 3 cut(s) 146, 393, 953
RseI CAYNNNNRTG 2 cut(s) 908, 936
SaqAI TTAA 5 cut(s) 678, 732, 753, 780, 849
SatI GCNGC 3 cut(s) 195, 297, 921
Sau3AI GATC 4 cut(s) 514, 579, 1030, 1058
Sau96I GGNCC 5 cut(s) 521, 696, 697, 855, 928
SchI GAGTC 2 cut(s) 281, 421
ScrFI CCNGG 2 cut(s) 320, 947
SduI GDGCHC 3 cut(s) 189, 437, 700
SfaNI GCATC 3 cut(s) 561, 1019, 1246
SinI GGWCC 2 cut(s) 521, 928
SmiMI CAYNNNNRTG 2 cut(s) 908, 936
SmlI CTYRAG 1 cut(s) 1312
SmoI CTYRAG 1 cut(s) 1312
SpeI ACTAGT 1 cut(s) 148
Sse9I AATT 9 cut(s) 396, 401, 493, 575, 786, 1068, 1108, 1152, 1331
SseBI AGGCCT 1 cut(s) 335
SsiI CCGC 2 cut(s) 880, 923
SspMI CTAG 4 cut(s) 149, 263, 593, 1016
StuI AGGCCT 1 cut(s) 335
StyD4I CCNGG 2 cut(s) 318, 945
StyI CCWWGG 2 cut(s) 858, 1287
TaaI ACNGT 4 cut(s) 159, 282, 1180, 1379
TaiI ACGT 2 cut(s) 967, 1134
TaqI TCGA 3 cut(s) 183, 426, 431
TasI AATT 9 cut(s) 396, 401, 493, 575, 786, 1068, 1108, 1152, 1331
TfiI GAWTC 5 cut(s) 98, 266, 428, 601, 1351
Tru1I TTAA 5 cut(s) 678, 732, 753, 780, 849
Tru9I TTAA 5 cut(s) 678, 732, 753, 780, 849
TscAI CASTG 9 cut(s) 97, 136, 162, 285, 495, 765, 1378, 1384, 1396
TseFI GTSAC 3 cut(s) 276, 1127, 1373
TseI GCWGC 3 cut(s) 194, 296, 920
Tsp45I GTSAC 3 cut(s) 276, 1127, 1373
TspDTI ATGAA 3 cut(s) 1061, 1184, 1308
TspRI CASTG 9 cut(s) 97, 136, 162, 285, 495, 765, 1378, 1384, 1396
Van91I CCANNNNNTGG 1 cut(s) 117
VpaK11BI GGWCC 2 cut(s) 521, 928
XapI RAATTY 4 cut(s) 401, 1068, 1108, 1331
XceI RCATGY 3 cut(s) 76, 142, 1190
XmiI GTMKAC 1 cut(s) 1175
XspI CTAG 4 cut(s) 149, 263, 593, 1016
Zsp2I ATGCAT 2 cut(s) 905, 1012
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.