Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0006299

Physical Location & Seq

Genomic Coordinates Reverse (-)

41605103 .. 41611177

Gene Structure 6075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG220400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1047 bp

ATGGAGAGTCAGAGCATAGTCGATTCGAGCACTCCTCTTTTGAAAGAAGAATACGCTTATGGAGTTGTTGAACATCCTTTCCCACTGAATTGCTTTATAAGAGACTGGGATCTTGGTCCAGCATTCTATCATGCTGTGAAAGTAGGCATCGTTCAGTATATGATACTGAAATTGATCTGCGCTCTGCTAGCCATGATTCTTCAAAGTTTTGGTGTTTATGGAGAAGGAAAGTTTGACTGGAGATATGGCTACCCTTACTTGGCAGTTGTTCTTAACTTTAGTCAGACATGGGCCCTATACTGCCTTGTGCAGTTCTATTCTGTCATCAAGGACAAATTACAACCTATTAAACCACTGGCGAAGTTTCTAACTTTTAAGTCAATTGTATTCTTGACATGGTGGCAAGGTGTTGCTGTTGCGTTTCTTTTCTCTATGGGTGCCTTTAAAGGGGCCTTGGCGCAGGAGCTGAAAACCCGCATACAAGATTACATCATATGCATAGAGATGGGTGTTGCTGCTGTGGTCCACCTATATGTCTTCCCGGCAGTACCTTACAAACGTGGAGAAAGATGTGTTCGCAATGTTGCTGTGATGGCTGACTATGCATCACTAGGAGCGCCTCCTGATCCAGAGGAGGTTCGTGATTGTGAAAGATCAACAAGAATTCATCTACAACGGCATGATGAGAGAGAAAAGCGCTTGAATTTCCCCCAGAGTGTTCGTGACGTGATTTTTGGAAGTGGAGAAATTATTGTTGATGACATGAAGTATACTGTTTCGCATGTGGTAGAACCTGTTGAAAGAGGATTTGCAAAGATAAATAAAACCTTGCATCAGATATCTGAGAATGTGAAACGCCACGAGGAGCAGAGGAGGAGTGCCAAGGATGATAGTTATCTTATCCCCTTGAGTTCATGGAACAGAGAATTTTCTGAAGTCCATGAGAATCTTGTTGAAGGGAGTGTCAGTGACAGTGGTTTGTCCAGTGGGAGGAGACACCACACCCAGTCTAAAGCTTCAACTTCTCGTCCAAGAGCAGGGAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000325 GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0006810 GO:0006996 GO:0007033 GO:0008150 GO:0009705 GO:0009966 GO:0009968 GO:0009987 GO:0010646 GO:0010648 GO:0016020 GO:0016021 GO:0016043 GO:0016192 GO:0023051 GO:0023057 GO:0031090 GO:0031224 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0050789 GO:0050794 GO:0051179 GO:0051234 GO:0065007 GO:0071840 GO:0098588 GO:0098805 GO:0098876 GO:1900457 GO:1900458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Solute_trans_a

Protein Analysis

348

Amino Acids

39.75

Weight (kDa)

8.4

Isoelectric Point (pI)

44.56

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Solute_trans_a	PF03619	23 - 185	3.7e-58	Organic solute transporter Ostalpha

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006299)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77220
fragaria_vesca	FvH4_2g14580 FvH4_2g14580 FvH4_2g14580 FvH4_2g14580 FvH4_2g14580 FvH4_2g14580 FvH4_2g14580 FvH4_2g14580
malus_domestica	MD05G1016800.v1.1 MD10G1016600.v1.1
prunus_persica	Prupe.8G020400_v2.0.a1 Prupe.8G020400_v2.0.a1 Prupe.8G020400_v2.0.a1
pyrus_communis	pycom05g00950 pycom10g01090
rosa_chinensis	RchiOBHm_Chr6g0277041
rosa_laevigata	RLG00000013343
rosa_multiflora	Rmu_sc0000206.1_g000009
rosa_roxburghii	Rroxscaffold_7G00191750
rosa_rugosa	Rorug06G0105600 Rorug06G0105700
rosa_samantha	Rh6AG215700 Rh6BG220400 Rh6CG223200 Rh6DG212800
rosa_wichuraiana	Rw6G018830

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	98
AccB1I	GGYRCC	1 cut(s)	437
AccI	GTMKAC	1 cut(s)	770
AciI	CCGC	1 cut(s)	475
AclWI	GGATC	2 cut(s)	117, 620
AcsI	RAATTY	3 cut(s)	663, 703, 926
AcuI	CTGAAG	1 cut(s)	954
AfaI	GTAC	1 cut(s)	549
AfeI	AGCGCT	1 cut(s)	698
AfiI	CCNNNNNNNGG	4 cut(s)	259, 447, 990, 1037
AgsI	TTSAA	7 cut(s)	43, 71, 203, 703, 800, 956, 1020
AjiI	CACGTC	1 cut(s)	727
AloI	GAACNNNNNNTCC	2 cut(s)	63, 95
AluBI	AGCT	2 cut(s)	466, 1016
AluI	AGCT	2 cut(s)	466, 1016
Alw21I	GWGCWC	1 cut(s)	32
Alw26I	GTCTC	2 cut(s)	96, 988
AlwI	GGATC	2 cut(s)	117, 620
AlwNI	CAGNNNCTG	1 cut(s)	466
Aor51HI	AGCGCT	1 cut(s)	698
AoxI	GGCC	2 cut(s)	291, 450
ApaI	GGGCCC	1 cut(s)	295
ApeKI	GCWGC	1 cut(s)	515
ApoI	RAATTY	3 cut(s)	663, 703, 926
ArsI	GACNNNNNNTTYG	2 cut(s)	716, 748
AspLEI	GCGC	4 cut(s)	182, 460, 619, 699
AspS9I	GGNCC	5 cut(s)	116, 291, 292, 450, 523
AsuC2I	CCSGG	1 cut(s)	542
AsuNHI	GCTAGC	1 cut(s)	187
AvaII	GGWCC	2 cut(s)	116, 523
BaeGI	GKGCMC	1 cut(s)	295
BanI	GGYRCC	1 cut(s)	437
BanII	GRGCYC	1 cut(s)	295
BauI	CACGAG	1 cut(s)	860
BbsI	GAAGAC	1 cut(s)	529
Bbv12I	GWGCWC	1 cut(s)	32
BbvI	GCAGC	1 cut(s)	502
BccI	CCATC	2 cut(s)	499, 586
BceAI	ACGGC	1 cut(s)	692
BcnI	CCSGG	1 cut(s)	542
BcoDI	GTCTC	2 cut(s)	96, 988
BfaI	CTAG	2 cut(s)	188, 611
BfoI	RGCGCY	2 cut(s)	620, 700
BisI	GCNGC	1 cut(s)	516
BlsI	GCNGC	1 cut(s)	517
Bme1390I	CCNGG	1 cut(s)	542
Bme18I	GGWCC	2 cut(s)	116, 523
BmgBI	CACGTC	1 cut(s)	727
BmgT120I	GGNCC	5 cut(s)	116, 291, 292, 450, 523
BmiI	GGNNCC	3 cut(s)	293, 439, 451
BmrFI	CCNGG	1 cut(s)	542
BmrI	ACTGGG	2 cut(s)	115, 1000
BmsI	GCATC	3 cut(s)	156, 614, 841
BmtI	GCTAGC	1 cut(s)	191
BmuI	ACTGGG	2 cut(s)	115, 1000
BpiI	GAAGAC	1 cut(s)	529
BplI	GAGNNNNNCTC	2 cut(s)	19, 51
BpmI	CTGGAG	1 cut(s)	259
BpuEI	CTTGAG	1 cut(s)	928
BpuMI	CCSGG	1 cut(s)	542
BsaBI	GATNNNNATC	1 cut(s)	894
BsaJI	CCNNGG	2 cut(s)	453, 882
BsaXI	ACNNNNNCTCC	2 cut(s)	952, 982
Bsc4I	CCNNNNNNNGG	4 cut(s)	259, 447, 990, 1037
Bse1I	ACTGG	5 cut(s)	110, 242, 360, 984, 1006
Bse3DI	GCAATG	1 cut(s)	586
Bse8I	GATNNNNATC	1 cut(s)	894
BseDI	CCNNGG	2 cut(s)	453, 882
BseGI	GGATG	2 cut(s)	73, 892
BseJI	GATNNNNATC	1 cut(s)	894
BseLI	CCNNNNNNNGG	4 cut(s)	259, 447, 990, 1037
BseMI	GCAATG	1 cut(s)	586
BseMII	CTCAG	1 cut(s)	834
BseNI	ACTGG	5 cut(s)	110, 242, 360, 984, 1006
BseRI	GAGGAG	6 cut(s)	24, 647, 878, 886, 889, 1006
BseSI	GKGCMC	1 cut(s)	295
BseXI	GCAGC	1 cut(s)	502
BsgI	GTGCAG	1 cut(s)	329
BshFI	GGCC	2 cut(s)	293, 452
BshNI	GGYRCC	1 cut(s)	437
BsiHKAI	GWGCWC	1 cut(s)	32
BsiSI	CCGG	1 cut(s)	542
BslI	CCNNNNNNNGG	4 cut(s)	259, 447, 990, 1037
BsmAI	GTCTC	2 cut(s)	96, 988
BsmI	GAATGC	1 cut(s)	122
BsnI	GGCC	2 cut(s)	293, 452
Bsp120I	GGGCCC	1 cut(s)	291
Bsp1286I	GDGCHC	2 cut(s)	32, 295
Bsp143I	GATC	4 cut(s)	109, 174, 625, 653
BspACI	CCGC	1 cut(s)	475
BspANI	GGCC	2 cut(s)	293, 452
BspCNI	CTCAG	1 cut(s)	835
BspLI	GGNNCC	3 cut(s)	293, 439, 451
BspOI	GCTAGC	1 cut(s)	191
BspPI	GGATC	2 cut(s)	117, 620
BspT107I	GGYRCC	1 cut(s)	437
BsrDI	GCAATG	1 cut(s)	586
BsrI	ACTGG	5 cut(s)	110, 242, 360, 984, 1006
BssECI	CCNNGG	2 cut(s)	453, 882
BssMI	GATC	4 cut(s)	109, 174, 625, 653
BssNAI	GTATAC	1 cut(s)	771
BssSI	CACGAG	1 cut(s)	860
BssT1I	CCWWGG	2 cut(s)	453, 882
Bst1107I	GTATAC	1 cut(s)	771
Bst2BI	CACGAG	1 cut(s)	860
Bst4CI	ACNGT	2 cut(s)	775, 974
BstC8I	GCNNGC	1 cut(s)	189
BstDEI	CTNAG	1 cut(s)	843
BstF5I	GGATG	2 cut(s)	73, 892
BstH2I	RGCGCY	2 cut(s)	620, 700
BstHHI	GCGC	4 cut(s)	182, 460, 619, 699
BstKTI	GATC	4 cut(s)	112, 177, 628, 656
BstMAI	GTCTC	2 cut(s)	96, 988
BstMBI	GATC	4 cut(s)	109, 174, 625, 653
BstMWI	GCNNNNNNNGC	3 cut(s)	188, 593, 602
BstNSI	RCATGY	1 cut(s)	785
BstSCI	CCNGG	1 cut(s)	540
BstSLI	GKGCMC	1 cut(s)	295
BstV1I	GCAGC	1 cut(s)	502
BstV2I	GAAGAC	1 cut(s)	529
BstX2I	RGATCY	1 cut(s)	109
BstYI	RGATCY	1 cut(s)	109
BstZ17I	GTATAC	1 cut(s)	771
BsuRI	GGCC	2 cut(s)	293, 452
BtrI	CACGTC	1 cut(s)	727
BtsCI	GGATG	2 cut(s)	73, 892
BtsIMutI	CAGTG	5 cut(s)	83, 353, 973, 979, 991
Cac8I	GCNNGC	1 cut(s)	189
CaiI	CAGNNNCTG	1 cut(s)	466
CfoI	GCGC	4 cut(s)	182, 460, 619, 699
Cfr13I	GGNCC	5 cut(s)	116, 291, 292, 450, 523
Csp6I	GTAC	1 cut(s)	548
CviAII	CATG	9 cut(s)	131, 193, 288, 396, 680, 763, 782, 915, 941
CviJI	RGCY	7 cut(s)	191, 249, 293, 452, 466, 596, 1016
CviKI_1	RGCY	7 cut(s)	191, 249, 293, 452, 466, 596, 1016
CviQI	GTAC	1 cut(s)	548
DdeI	CTNAG	1 cut(s)	843
DpnI	GATC	4 cut(s)	111, 176, 627, 655
DpnII	GATC	4 cut(s)	109, 174, 625, 653
DraI	TTTAAA	1 cut(s)	445
Eco130I	CCWWGG	2 cut(s)	453, 882
Eco24I	GRGCYC	1 cut(s)	295
Eco32I	GATATC	1 cut(s)	840
Eco47I	GGWCC	2 cut(s)	116, 523
Eco47III	AGCGCT	1 cut(s)	698
Eco57I	CTGAAG	1 cut(s)	954
EcoO109I	RGGNCCY	2 cut(s)	292, 450
EcoRI	GAATTC	1 cut(s)	663
EcoRV	GATATC	1 cut(s)	840
EcoT14I	CCWWGG	2 cut(s)	453, 882
EcoT22I	ATGCAT	2 cut(s)	500, 607
EcoT38I	GRGCYC	1 cut(s)	295
ErhI	CCWWGG	2 cut(s)	453, 882
FaeI	CATG	9 cut(s)	134, 196, 291, 399, 683, 766, 785, 918, 944
FatI	CATG	9 cut(s)	130, 192, 287, 395, 679, 762, 781, 914, 940
FauI	CCCGC	1 cut(s)	482
FauNDI	CATATG	1 cut(s)	494
FblI	GTMKAC	1 cut(s)	770
Fnu4HI	GCNGC	1 cut(s)	516
FokI	GGATG	2 cut(s)	60, 899
FriOI	GRGCYC	1 cut(s)	295
Fsp4HI	GCNGC	1 cut(s)	516
FspBI	CTAG	2 cut(s)	188, 611
GlaI	GCGC	4 cut(s)	181, 459, 618, 698
GluI	GCNGC	1 cut(s)	516
GsuI	CTGGAG	1 cut(s)	259
HaeII	RGCGCY	2 cut(s)	620, 700
HaeIII	GGCC	2 cut(s)	293, 452
HapII	CCGG	1 cut(s)	542
HhaI	GCGC	4 cut(s)	182, 460, 619, 699
Hin1II	CATG	9 cut(s)	134, 196, 291, 399, 683, 766, 785, 918, 944
Hin6I	GCGC	4 cut(s)	180, 458, 617, 697
HinP1I	GCGC	4 cut(s)	180, 458, 617, 697
HindIII	AAGCTT	1 cut(s)	1014
HinfI	GANTC	4 cut(s)	7, 23, 196, 946
HpaII	CCGG	1 cut(s)	542
Hpy166II	GTNNAC	2 cut(s)	526, 771
Hpy188I	TCNGA	5 cut(s)	12, 285, 837, 844, 934
Hpy188III	TCNNGA	5 cut(s)	391, 623, 629, 641, 722
Hpy8I	GTNNAC	2 cut(s)	526, 771
HpyAV	CCTTC	2 cut(s)	218, 950
HpyCH4III	ACNGT	2 cut(s)	775, 974
HpyCH4IV	ACGT	2 cut(s)	559, 726
HpyCH4V	TGCA	5 cut(s)	310, 498, 605, 812, 832
HpyF10VI	GCNNNNNNNGC	3 cut(s)	188, 593, 602
HpyF3I	CTNAG	1 cut(s)	843
HpySE526I	ACGT	2 cut(s)	559, 726
Hsp92II	CATG	9 cut(s)	134, 196, 291, 399, 683, 766, 785, 918, 944
HspAI	GCGC	4 cut(s)	180, 458, 617, 697
Kzo9I	GATC	4 cut(s)	109, 174, 625, 653
LmnI	GCTCC	3 cut(s)	463, 614, 865
Lsp1109I	GCAGC	1 cut(s)	502
LweI	GCATC	3 cut(s)	156, 614, 841
MaeI	CTAG	2 cut(s)	188, 611
MaeII	ACGT	2 cut(s)	559, 726
MaeIII	GTNAC	2 cut(s)	722, 968
MalI	GATC	4 cut(s)	111, 176, 627, 655
MboI	GATC	4 cut(s)	109, 174, 625, 653
MboII	GAAGA	3 cut(s)	59, 191, 529
MfeI	CAATTG	1 cut(s)	381
MflI	RGATCY	1 cut(s)	109
MhlI	GDGCHC	2 cut(s)	32, 295
MluCI	AATT	8 cut(s)	88, 170, 335, 381, 663, 703, 747, 926
MlyI	GAGTC	1 cut(s)	16
MnlI	CCTC	9 cut(s)	45, 625, 628, 630, 797, 856, 864, 867, 984
Mph1103I	ATGCAT	2 cut(s)	500, 607
MseI	TTAA	4 cut(s)	273, 348, 375, 444
MslI	CAYNNNNRTG	2 cut(s)	503, 531
MspI	CCGG	1 cut(s)	542
MspR9I	CCNGG	1 cut(s)	542
MunI	CAATTG	1 cut(s)	381
Mva1269I	GAATGC	1 cut(s)	122
MwoI	GCNNNNNNNGC	3 cut(s)	188, 593, 602
NciI	CCSGG	1 cut(s)	542
NdeI	CATATG	1 cut(s)	494
NdeII	GATC	4 cut(s)	109, 174, 625, 653
NheI	GCTAGC	1 cut(s)	187
NlaIII	CATG	9 cut(s)	134, 196, 291, 399, 683, 766, 785, 918, 944
NlaIV	GGNNCC	3 cut(s)	293, 439, 451
NmuCI	GTSAC	2 cut(s)	722, 968
NsiI	ATGCAT	2 cut(s)	500, 607
NspI	RCATGY	1 cut(s)	785
PctI	GAATGC	1 cut(s)	122
PfeI	GAWTC	3 cut(s)	23, 196, 946
PkrI	GCNGC	1 cut(s)	517
PleI	GAGTC	1 cut(s)	15
PpsI	GAGTC	1 cut(s)	15
PsiI	TTATAA	1 cut(s)	98
PspN4I	GGNNCC	3 cut(s)	293, 439, 451
PspOMI	GGGCCC	1 cut(s)	291
PspPI	GGNCC	5 cut(s)	116, 291, 292, 450, 523
PsrI	GAACNNNNNNTAC	2 cut(s)	135, 167
PstNI	CAGNNNCTG	1 cut(s)	466
PsuI	RGATCY	1 cut(s)	109
RsaI	GTAC	1 cut(s)	549
RsaNI	GTAC	1 cut(s)	548
RseI	CAYNNNNRTG	2 cut(s)	503, 531
SaqAI	TTAA	4 cut(s)	273, 348, 375, 444
SatI	GCNGC	1 cut(s)	516
Sau3AI	GATC	4 cut(s)	109, 174, 625, 653
Sau96I	GGNCC	5 cut(s)	116, 291, 292, 450, 523
SchI	GAGTC	1 cut(s)	16
ScrFI	CCNGG	1 cut(s)	542
SduI	GDGCHC	2 cut(s)	32, 295
SfaNI	GCATC	3 cut(s)	156, 614, 841
SinI	GGWCC	2 cut(s)	116, 523
SmiMI	CAYNNNNRTG	2 cut(s)	503, 531
SmlI	CTYRAG	1 cut(s)	907
SmoI	CTYRAG	1 cut(s)	907
Sse9I	AATT	8 cut(s)	88, 170, 335, 381, 663, 703, 747, 926
SsiI	CCGC	1 cut(s)	475
SspMI	CTAG	2 cut(s)	188, 611
StyD4I	CCNGG	1 cut(s)	540
StyI	CCWWGG	2 cut(s)	453, 882
TaaI	ACNGT	2 cut(s)	775, 974
TaiI	ACGT	2 cut(s)	562, 729
TaqI	TCGA	2 cut(s)	21, 26
TasI	AATT	8 cut(s)	88, 170, 335, 381, 663, 703, 747, 926
TfiI	GAWTC	3 cut(s)	23, 196, 946
Tru1I	TTAA	4 cut(s)	273, 348, 375, 444
Tru9I	TTAA	4 cut(s)	273, 348, 375, 444
TscAI	CASTG	5 cut(s)	90, 360, 973, 979, 991
TseFI	GTSAC	2 cut(s)	722, 968
TseI	GCWGC	1 cut(s)	515
Tsp45I	GTSAC	2 cut(s)	722, 968
TspDTI	ATGAA	3 cut(s)	656, 779, 903
TspRI	CASTG	5 cut(s)	90, 360, 973, 979, 991
VpaK11BI	GGWCC	2 cut(s)	116, 523
XapI	RAATTY	3 cut(s)	663, 703, 926
XceI	RCATGY	1 cut(s)	785
XmiI	GTMKAC	1 cut(s)	770
XspI	CTAG	2 cut(s)	188, 611
Zsp2I	ATGCAT	2 cut(s)	500, 607

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.