MD10G1016600.v1.1

Organic solute transporter Ostalpha

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr10
Physical Location & Seq
Forward (+)
2147986 .. 2153583
5598 bp
Loading structure...
UTR
Exon/CDS
Intron
MD10G1016600.v1.1.491

Sequence Viewer

Length: 1461 bp
ATGGGATGGAGGGGAATTTTATGTTCTTCCTTTTTCTTTATATCCCTAGTTGAGTCCTCGAGCAGATTAGGAGAAATGTGGTCACTCAACCTTGGTGCTGAATCATCAGCAGCTTTCAGCTGGCCAATCCTCAGTGCTAGCATTTTTGTACTTGTTGCTCTCTTTCTCTCCATGTACCTTATCTTCGAGCATTTAGCTGCATATAATCAGCCAGAGGAGCAGAAGTTTCTGATTGGTCTCATTTTGATGGTTCCTGTTTATGCACTGGAATCGTTTTTGTCACTGTTGGACTCAAATGTGGCCTTCAACTGCGAAGCAATTCGGGACTGCTATGAGGCATTTGCACTATATTGTTTTGAGAGATACCTGATAGCCTGCTTAGGTGGTGAAGAGAGGACAATTGAATTTATGGAGAATAAGAGTGTAGTTGATTCGAGCACACCACTTTTGAAAGAAGCTTATGCTTATGGAGTTGTAGAGCATCCTTTCCCACTGAATTGCCTCATAGGAGACTGGCCTCTTGGCTCCACATTCTACCATGCTGTGAAAGTTGGCATCGTTCAGTATATGATAGTGAAATTGATCTGCGCTTTGCTAGCAATGATTCTTGAGACTTGTGGTGTTTATGGAGAAGGGAAATTTGACTGGAGATATGGCTATCCGTACTTGGCAGTTGTTCTTAATTTTAGTCAGACATGGGCCCTATATTGCCTTGTACAGTTTTACTCCGTCATTAAGGATAAATTACAACCCATTAAACCCTTGGCGAAGTTTCTGACTTTCAAGTCGATTGTGTTCTTGACATGGTGGCAAGGTGTTGCTGTTGCATTTCTTTTCTCTATGGGTGCCTTCAAAGGGTCATTGGCTCAGGAGCTGAAAACTCGGATACAAGACTACATCATATGCATAGAGATGGGTGTTGCTGCTGTAGTCCACCTGTATGTGTTTCCAGCTGTACCTTACAAACGTGGAGAAAGATGTGTTCGTAATGTTGCTGTGATGACTGACTATGCCTCACTGGGAGCACCTCCTGATCCAGAAGAGGTGCGTGATTGTGAAAGAACAACCAGAATGCATCTGGCAGTGGCACGGCATGATGAGAGAGAAAAGCGGCTGAATTTCCCCCAGAGTGTTCGTGATGTAATTTTTGGAAGTGGAGAAATTATCGTTGATGACATGAAGTATACAGTTTCCCATGTGGTAGAACCAGTTGAAAGAGGAATTGCAAAGATAAACAAAACCTTGCATCAGATATCCGAGAATGTGAAACGCCACGAGGAGCAGAGGAAGAGCATCAAGGATGATACTTATCTTATCCCCTTAAACTCATGGAATAGAGAGTTTTCTGAAGTTCAGGACAATCTTGTTGGAGGTAGTGTCAGTGACAGTGGCATAGCCGGTGGAAGGAGGCAGCAGTCCCAGTCTAAAGCTTCAACGTCTCGGACTAGAGCATGGAGATGA

Protein Analysis

487

Amino Acids

55.08

Weight (kDa)

6.19

Isoelectric Point (pI)

39.1

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Solute_trans_a PF03619 44 - 321 1.9e-91 Organic solute transporter Ostalpha
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 784
AccB1I GGYRCC 1 cut(s) 845
AccI GTMKAC 1 cut(s) 1184
AciI CCGC 1 cut(s) 1111
AclWI GGATC 1 cut(s) 1028
AcoI YGGCCR 1 cut(s) 122
AcsI RAATTY 4 cut(s) 15, 404, 638, 1117
AcuI CTGAAG 1 cut(s) 1368
AfaI GTAC 5 cut(s) 150, 176, 665, 717, 957
AfiI CCNNNNNNNGG 2 cut(s) 855, 1404
AgsI TTSAA 7 cut(s) 307, 404, 451, 784, 853, 1214, 1434
AluBI AGCT 7 cut(s) 113, 120, 197, 458, 874, 953, 1430
AluI AGCT 7 cut(s) 113, 120, 197, 458, 874, 953, 1430
Alw21I GWGCWC 2 cut(s) 440, 1027
Alw26I GTCTC 4 cut(s) 242, 504, 605, 1443
AlwI GGATC 1 cut(s) 1028
AlwNI CAGNNNCTG 1 cut(s) 874
Ama87I CYCGRG 1 cut(s) 58
AoxI GGCC 4 cut(s) 122, 300, 515, 699
ApaI GGGCCC 1 cut(s) 703
ApeKI GCWGC 4 cut(s) 110, 197, 923, 1411
ApoI RAATTY 4 cut(s) 15, 404, 638, 1117
Asp700I GAANNNNTTC 1 cut(s) 318
AspLEI GCGC 1 cut(s) 590
AspS9I GGNCC 2 cut(s) 699, 700
AsuHPI GGTGA 1 cut(s) 398
AsuNHI GCTAGC 2 cut(s) 137, 595
AvaI CYCGRG 1 cut(s) 58
BaeGI GKGCMC 1 cut(s) 703
BalI TGGCCA 1 cut(s) 124
BanI GGYRCC 1 cut(s) 845
BanII GRGCYC 1 cut(s) 703
BarI GAAGNNNNNNTAC 2 cut(s) 167, 199
BauI CACGAG 1 cut(s) 1274
Bbv12I GWGCWC 2 cut(s) 440, 1027
BbvI GCAGC 4 cut(s) 122, 184, 910, 1423
BccI CCATC 2 cut(s) 241, 907
BceAI ACGGC 1 cut(s) 1106
BcgI CGANNNNNNTGC 2 cut(s) 252, 286
BciVI GTATCC 1 cut(s) 879
BcoDI GTCTC 4 cut(s) 242, 504, 605, 1443
BfaI CTAG 4 cut(s) 47, 138, 596, 1446
BfmI CTRYAG 1 cut(s) 927
BfuI GTATCC 1 cut(s) 879
BisI GCNGC 5 cut(s) 111, 198, 924, 1112, 1412
BlsI GCNGC 5 cut(s) 112, 199, 925, 1113, 1413
BmeT110I CYCGRG 1 cut(s) 58
BmgT120I GGNCC 2 cut(s) 699, 700
BmiI GGNNCC 4 cut(s) 252, 526, 701, 847
BmrI ACTGGG 2 cut(s) 1028, 1414
BmsI GCATC 5 cut(s) 490, 564, 1084, 1255, 1302
BmtI GCTAGC 2 cut(s) 141, 599
BmuI ACTGGG 2 cut(s) 1028, 1414
BpmI CTGGAG 1 cut(s) 667
Bpu10I CCTNAGC 2 cut(s) 379, 867
BpuEI CTTGAG 1 cut(s) 629
BsaBI GATNNNNATC 1 cut(s) 1308
BsaI GGTCTC 1 cut(s) 242
BsaJI CCNNGG 2 cut(s) 91, 762
BsaXI ACNNNNNCTCC 4 cut(s) 209, 239, 1362, 1392
Bsc4I CCNNNNNNNGG 2 cut(s) 855, 1404
Bse118I RCCGGY 1 cut(s) 1397
Bse1I ACTGG 6 cut(s) 270, 518, 650, 1023, 1208, 1420
Bse3DI GCAATG 1 cut(s) 606
Bse8I GATNNNNATC 1 cut(s) 1308
BseDI CCNNGG 2 cut(s) 91, 762
BseGI GGATG 3 cut(s) 11, 481, 1306
BseJI GATNNNNATC 1 cut(s) 1308
BseLI CCNNNNNNNGG 2 cut(s) 855, 1404
BseMI GCAATG 1 cut(s) 606
BseMII CTCAG 2 cut(s) 145, 881
BseNI ACTGG 6 cut(s) 270, 518, 650, 1023, 1208, 1420
BseRI GAGGAG 2 cut(s) 230, 1292
BseSI GKGCMC 1 cut(s) 703
BseXI GCAGC 4 cut(s) 122, 184, 910, 1423
BshFI GGCC 4 cut(s) 124, 302, 517, 701
BshNI GGYRCC 1 cut(s) 845
BsiHKAI GWGCWC 2 cut(s) 440, 1027
BsiHKCI CYCGRG 1 cut(s) 58
BsiSI CCGG 1 cut(s) 1398
BslFI GGGAC 2 cut(s) 338, 1402
BslI CCNNNNNNNGG 2 cut(s) 855, 1404
BsmAI GTCTC 4 cut(s) 242, 504, 605, 1443
BsmBI CGTCTC 1 cut(s) 1443
BsmFI GGGAC 2 cut(s) 338, 1402
BsmI GAATGC 1 cut(s) 1077
BsnI GGCC 4 cut(s) 124, 302, 517, 701
Bso31I GGTCTC 1 cut(s) 242
BsoBI CYCGRG 1 cut(s) 58
Bsp120I GGGCCC 1 cut(s) 699
Bsp1286I GDGCHC 3 cut(s) 440, 703, 1027
Bsp1407I TGTACA 1 cut(s) 715
Bsp143I GATC 2 cut(s) 582, 1033
BspACI CCGC 1 cut(s) 1111
BspANI GGCC 4 cut(s) 124, 302, 517, 701
BspCNI CTCAG 2 cut(s) 144, 880
BspLI GGNNCC 4 cut(s) 252, 526, 701, 847
BspOI GCTAGC 2 cut(s) 141, 599
BspPI GGATC 1 cut(s) 1028
BspQI GCTCTTC 1 cut(s) 1283
BspT107I GGYRCC 1 cut(s) 845
BspTNI GGTCTC 1 cut(s) 242
BsrDI GCAATG 1 cut(s) 606
BsrFI RCCGGY 1 cut(s) 1397
BsrGI TGTACA 1 cut(s) 715
BsrI ACTGG 6 cut(s) 270, 518, 650, 1023, 1208, 1420
BssAI RCCGGY 1 cut(s) 1397
BssECI CCNNGG 2 cut(s) 91, 762
BssMI GATC 2 cut(s) 582, 1033
BssNAI GTATAC 1 cut(s) 1185
BssSI CACGAG 1 cut(s) 1274
BssT1I CCWWGG 2 cut(s) 91, 762
Bst1107I GTATAC 1 cut(s) 1185
Bst2BI CACGAG 1 cut(s) 1274
Bst4CI ACNGT 4 cut(s) 285, 720, 1189, 1388
Bst6I CTCTTC 3 cut(s) 384, 1035, 1283
BstAUI TGTACA 1 cut(s) 715
BstC8I GCNNGC 4 cut(s) 122, 139, 376, 597
BstDEI CTNAG 3 cut(s) 131, 379, 867
BstF5I GGATG 3 cut(s) 11, 481, 1306
BstHHI GCGC 1 cut(s) 590
BstKTI GATC 2 cut(s) 585, 1036
BstMAI GTCTC 4 cut(s) 242, 504, 605, 1443
BstMBI GATC 2 cut(s) 582, 1033
BstMWI GCNNNNNNNGC 2 cut(s) 217, 596
BstSFI CTRYAG 1 cut(s) 927
BstSLI GKGCMC 1 cut(s) 703
BstV1I GCAGC 4 cut(s) 122, 184, 910, 1423
BstZ17I GTATAC 1 cut(s) 1185
BsuI GTATCC 1 cut(s) 879
BsuRI GGCC 4 cut(s) 124, 302, 517, 701
BtsCI GGATG 3 cut(s) 11, 481, 1306
BtsI GCAGTG 1 cut(s) 1089
BtsIMutI CAGTG 8 cut(s) 139, 263, 281, 491, 1016, 1089, 1387, 1393
Cac8I GCNNGC 4 cut(s) 122, 139, 376, 597
CaiI CAGNNNCTG 1 cut(s) 874
CfoI GCGC 1 cut(s) 590
Cfr10I RCCGGY 1 cut(s) 1397
Cfr13I GGNCC 2 cut(s) 699, 700
Csp6I GTAC 5 cut(s) 149, 175, 664, 716, 956
CviAII CATG 9 cut(s) 172, 539, 696, 804, 1094, 1177, 1196, 1329, 1452
CviQI GTAC 5 cut(s) 149, 175, 664, 716, 956
DdeI CTNAG 3 cut(s) 131, 379, 867
DpnI GATC 2 cut(s) 584, 1035
DpnII GATC 2 cut(s) 582, 1033
DrdI GACNNNNNNGTC 1 cut(s) 784
DseDI GACNNNNNNGTC 1 cut(s) 784
EaeI YGGCCR 1 cut(s) 122
Eam1104I CTCTTC 3 cut(s) 384, 1035, 1283
EarI CTCTTC 3 cut(s) 384, 1035, 1283
Eco130I CCWWGG 2 cut(s) 91, 762
Eco24I GRGCYC 1 cut(s) 703
Eco31I GGTCTC 1 cut(s) 242
Eco32I GATATC 1 cut(s) 1254
Eco57I CTGAAG 1 cut(s) 1368
Eco88I CYCGRG 1 cut(s) 58
EcoO109I RGGNCCY 1 cut(s) 700
EcoRV GATATC 1 cut(s) 1254
EcoT14I CCWWGG 2 cut(s) 91, 762
EcoT22I ATGCAT 2 cut(s) 908, 1077
EcoT38I GRGCYC 1 cut(s) 703
ErhI CCWWGG 2 cut(s) 91, 762
Esp3I CGTCTC 1 cut(s) 1443
FaeI CATG 9 cut(s) 175, 542, 699, 807, 1097, 1180, 1199, 1332, 1455
FaqI GGGAC 2 cut(s) 338, 1402
FatI CATG 9 cut(s) 171, 538, 695, 803, 1093, 1176, 1195, 1328, 1451
FauNDI CATATG 1 cut(s) 902
FblI GTMKAC 1 cut(s) 1184
Fnu4HI GCNGC 5 cut(s) 111, 198, 924, 1112, 1412
FokI GGATG 3 cut(s) 18, 468, 1313
FriOI GRGCYC 1 cut(s) 703
Fsp4HI GCNGC 5 cut(s) 111, 198, 924, 1112, 1412
FspBI CTAG 4 cut(s) 47, 138, 596, 1446
GlaI GCGC 1 cut(s) 589
GluI GCNGC 5 cut(s) 111, 198, 924, 1112, 1412
GsuI CTGGAG 1 cut(s) 667
HaeIII GGCC 4 cut(s) 124, 302, 517, 701
HapII CCGG 1 cut(s) 1398
HhaI GCGC 1 cut(s) 590
Hin1II CATG 9 cut(s) 175, 542, 699, 807, 1097, 1180, 1199, 1332, 1455
Hin6I GCGC 1 cut(s) 588
HinP1I GCGC 1 cut(s) 588
HindIII AAGCTT 2 cut(s) 456, 1428
HinfI GANTC 6 cut(s) 53, 101, 269, 290, 431, 604
HpaII CCGG 1 cut(s) 1398
HphI GGTGA 1 cut(s) 398
Hpy166II GTNNAC 2 cut(s) 934, 1185
Hpy188I TCNGA 8 cut(s) 231, 693, 777, 885, 1251, 1258, 1348, 1443
Hpy188III TCNNGA 8 cut(s) 323, 608, 799, 869, 1031, 1037, 1136, 1355
Hpy8I GTNNAC 2 cut(s) 934, 1185
HpyAV CCTTC 4 cut(s) 313, 626, 859, 1398
HpyCH4III ACNGT 4 cut(s) 285, 720, 1189, 1388
HpyCH4IV ACGT 2 cut(s) 967, 1436
HpyCH4V TGCA 8 cut(s) 200, 263, 344, 827, 906, 1075, 1226, 1246
HpyF10VI GCNNNNNNNGC 2 cut(s) 217, 596
HpyF3I CTNAG 3 cut(s) 131, 379, 867
HpySE526I ACGT 2 cut(s) 967, 1436
Hsp92II CATG 9 cut(s) 175, 542, 699, 807, 1097, 1180, 1199, 1332, 1455
HspAI GCGC 1 cut(s) 588
Kzo9I GATC 2 cut(s) 582, 1033
LguI GCTCTTC 1 cut(s) 1283
LmnI GCTCC 5 cut(s) 217, 530, 871, 1022, 1279
Lsp1109I GCAGC 4 cut(s) 122, 184, 910, 1423
LweI GCATC 5 cut(s) 490, 564, 1084, 1255, 1302
MaeI CTAG 4 cut(s) 47, 138, 596, 1446
MaeII ACGT 2 cut(s) 967, 1436
MaeIII GTNAC 3 cut(s) 81, 279, 1382
MalI GATC 2 cut(s) 584, 1035
MboI GATC 2 cut(s) 582, 1033
MboII GAAGA 5 cut(s) 18, 175, 401, 1052, 1300
MfeI CAATTG 1 cut(s) 399
MhlI GDGCHC 3 cut(s) 440, 703, 1027
MlsI TGGCCA 1 cut(s) 124
MluNI TGGCCA 1 cut(s) 124
MlyI GAGTC 2 cut(s) 62, 284
MmeI TCCRAC 2 cut(s) 267, 1348
Mox20I TGGCCA 1 cut(s) 124
Mph1103I ATGCAT 2 cut(s) 908, 1077
MroXI GAANNNNTTC 1 cut(s) 318
MscI TGGCCA 1 cut(s) 124
MseI TTAA 4 cut(s) 681, 735, 756, 1322
MslI CAYNNNNRTG 4 cut(s) 245, 911, 939, 1456
Msp20I TGGCCA 1 cut(s) 124
MspA1I CMGCKG 2 cut(s) 120, 953
MspI CCGG 1 cut(s) 1398
MunI CAATTG 1 cut(s) 399
Mva1269I GAATGC 1 cut(s) 1077
MwoI GCNNNNNNNGC 2 cut(s) 217, 596
NdeI CATATG 1 cut(s) 902
NdeII GATC 2 cut(s) 582, 1033
NheI GCTAGC 2 cut(s) 137, 595
NlaIII CATG 9 cut(s) 175, 542, 699, 807, 1097, 1180, 1199, 1332, 1455
NlaIV GGNNCC 4 cut(s) 252, 526, 701, 847
NmuCI GTSAC 3 cut(s) 81, 279, 1382
NsiI ATGCAT 2 cut(s) 908, 1077
PaeR7I CTCGAG 1 cut(s) 58
PciSI GCTCTTC 1 cut(s) 1283
PctI GAATGC 1 cut(s) 1077
PdmI GAANNNNTTC 1 cut(s) 318
PfeI GAWTC 4 cut(s) 101, 269, 431, 604
PkrI GCNGC 5 cut(s) 112, 199, 925, 1113, 1413
PleI GAGTC 2 cut(s) 61, 284
PpsI GAGTC 2 cut(s) 61, 284
PspN4I GGNNCC 4 cut(s) 252, 526, 701, 847
PspOMI GGGCCC 1 cut(s) 699
PspPI GGNCC 2 cut(s) 699, 700
PspXI VCTCGAGB 1 cut(s) 58
PstNI CAGNNNCTG 1 cut(s) 874
PvuII CAGCTG 2 cut(s) 120, 953
RsaI GTAC 5 cut(s) 150, 176, 665, 717, 957
RsaNI GTAC 5 cut(s) 149, 175, 664, 716, 956
RseI CAYNNNNRTG 4 cut(s) 245, 911, 939, 1456
SapI GCTCTTC 1 cut(s) 1283
SaqAI TTAA 4 cut(s) 681, 735, 756, 1322
SatI GCNGC 5 cut(s) 111, 198, 924, 1112, 1412
Sau3AI GATC 2 cut(s) 582, 1033
Sau96I GGNCC 2 cut(s) 699, 700
SchI GAGTC 2 cut(s) 62, 284
SduI GDGCHC 3 cut(s) 440, 703, 1027
SfaNI GCATC 5 cut(s) 490, 564, 1084, 1255, 1302
SfcI CTRYAG 1 cut(s) 927
Sfr274I CTCGAG 1 cut(s) 58
SlaI CTCGAG 1 cut(s) 58
SmiMI CAYNNNNRTG 4 cut(s) 245, 911, 939, 1456
SmlI CTYRAG 2 cut(s) 58, 608
SmoI CTYRAG 2 cut(s) 58, 608
SsiI CCGC 1 cut(s) 1111
SspMI CTAG 4 cut(s) 47, 138, 596, 1446
StyI CCWWGG 2 cut(s) 91, 762
TaaI ACNGT 4 cut(s) 285, 720, 1189, 1388
TaiI ACGT 2 cut(s) 970, 1439
TaqI TCGA 4 cut(s) 59, 186, 434, 788
TatI WGTACW 2 cut(s) 148, 715
TauI GCSGC 1 cut(s) 1114
TfiI GAWTC 4 cut(s) 101, 269, 431, 604
Tru1I TTAA 4 cut(s) 681, 735, 756, 1322
Tru9I TTAA 4 cut(s) 681, 735, 756, 1322
TscAI CASTG 8 cut(s) 139, 270, 288, 498, 1023, 1089, 1387, 1393
TseFI GTSAC 3 cut(s) 81, 279, 1382
TseI GCWGC 4 cut(s) 110, 197, 923, 1411
Tsp45I GTSAC 3 cut(s) 81, 279, 1382
TspDTI ATGAA 1 cut(s) 1193
TspGWI ACGGA 2 cut(s) 651, 718
TspRI CASTG 8 cut(s) 139, 270, 288, 498, 1023, 1089, 1387, 1393
XapI RAATTY 4 cut(s) 15, 404, 638, 1117
XcmI CCANNNNNNNNNTGG 2 cut(s) 760, 1075
XhoI CTCGAG 1 cut(s) 58
XmiI GTMKAC 1 cut(s) 1184
XmnI GAANNNNTTC 1 cut(s) 318
XspI CTAG 4 cut(s) 47, 138, 596, 1446
Zsp2I ATGCAT 2 cut(s) 908, 1077
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.