Rw6G018830

Organic solute transporter Ostalpha

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0006299
Physical Location & Seq
Reverse (-)
37576215 .. 37582224
6010 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G018830.1

Sequence Viewer

Length: 1209 bp
ATGGTTCCTGTTTATGCCCTAGAATCATTTGTGTCACTGTTGGACTCAAATGCTGCATTCAACTGGGAAGCAATCCGGGACTGCTATGAGGCCTTTGCATTATATTGTTTTGAGAGATACTTGATAGCCTGCTTAGGTGGTGAGAAGCGTACAATTGAATTTATGGAGAGTCAGAGCACAGTCGATTCGAGCACTCCTCTTTTGAAAGAAGAATATGCTTATGGAGTTGTTGAACATCCTTTCCCACTGAATTGCTTTATAAGAGACTGGGATCTTGGACCAGCATTCTATCATGCTGTGAAAGTAGGCATCGTTCAGTATATGATACTGAAATTGATCTGCGCTCTGCTAGCCATGATTCTTCAAAGTTTTGGTGTTTATGGAGAAGGAAAGTTTGACTGGAGATATGGCTACCCTTACTTGGCAGTTGTTCTTAACTTTAGTCAGACATGGGCCCTATACTGCCTTGTGCAGTTCTATTCTGTCATCAAGGACAAATTACAACCCATTAAACCACTGGCGAAGTTTCTAACTTTTAAGTCAATTGTATTCTTGACATGGTGGCAAGGTGTTGCTGTTGCGTTTCTTTTCTCTATGGGTGCCTTTAAAGGGGCCTTAGCGCAGGAGCTGAAAACCCGCATACAAGATTACATCATATGCATAGAGATGGGTGTTGCTGCTGTGGTCCACCTATATGTCTTCCCGGCAGTACCTTACAAACGTGGAGAAAGATGTGTTCGCAATGTTGCTGTGATGGCTGACTATGCATCACTAGGAGCGCCTCCTGATCCAGAGGAGGTTCGTGATTGTGAAAGATCAACAAGAATTCATCTACAGCGGCATGATGAGAGAGAAAAGCGCTTGAATTTCCCCCAGAGTGTTCGTGACGTGATTTTTGGAAGTGGAGAAATTATTGTTGATGACATGAAGTATACAGTTTCACATGTGGTAGAACCAGTTGAAAGAGGATTTGCAAAGATAAATAAAACCTTGCATCAGATATCTGAGAATGTGAAACGCCATGAGGAGCAGAGGAGGAGTGCCAAGGATGATAGTTATCTTATCCCCTTGAGTTCATGGAACAGAGAATTTTCTGAAGTCCATCAGAATCTTGTTGAAGGGAGTGTCAGTGACAGTGGTTTGTCCAATGGGAGGAGACAGCACACCCAGTCTAAAGCTTCAACTTCTCGTCCAAGAGCAGGGAGATGA

Protein Analysis

402

Amino Acids

45.99

Weight (kDa)

7.12

Isoelectric Point (pI)

44.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Solute_trans_a PF03619 1 - 239 1.4e-77 Organic solute transporter Ostalpha
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 260
AccB1I GGYRCC 1 cut(s) 599
AccI GTMKAC 1 cut(s) 932
AciI CCGC 2 cut(s) 637, 838
AclWI GGATC 2 cut(s) 279, 782
AcsI RAATTY 4 cut(s) 158, 825, 865, 1088
AcuI CTGAAG 1 cut(s) 1116
AfaI GTAC 2 cut(s) 151, 711
AfeI AGCGCT 1 cut(s) 860
AfiI CCNNNNNNNGG 4 cut(s) 421, 609, 1152, 1199
AflIII ACRYGT 1 cut(s) 943
AgsI TTSAA 9 cut(s) 61, 158, 205, 233, 365, 865, 962, 1118, 1182
AjiI CACGTC 1 cut(s) 889
AloI GAACNNNNNNTCC 2 cut(s) 225, 257
AluBI AGCT 2 cut(s) 628, 1178
AluI AGCT 2 cut(s) 628, 1178
Alw21I GWGCWC 2 cut(s) 179, 194
Alw26I GTCTC 2 cut(s) 258, 1150
AlwI GGATC 2 cut(s) 279, 782
AlwNI CAGNNNCTG 1 cut(s) 628
Aor51HI AGCGCT 1 cut(s) 860
AoxI GGCC 3 cut(s) 90, 453, 612
ApaI GGGCCC 1 cut(s) 457
ApeKI GCWGC 2 cut(s) 53, 677
ApoI RAATTY 4 cut(s) 158, 825, 865, 1088
ArsI GACNNNNNNTTYG 2 cut(s) 878, 910
AspLEI GCGC 4 cut(s) 344, 622, 781, 861
AspS9I GGNCC 5 cut(s) 278, 453, 454, 612, 685
AsuC2I CCSGG 2 cut(s) 77, 704
AsuHPI GGTGA 1 cut(s) 152
AsuNHI GCTAGC 1 cut(s) 349
AvaII GGWCC 2 cut(s) 278, 685
BaeGI GKGCMC 1 cut(s) 457
BanI GGYRCC 1 cut(s) 599
BanII GRGCYC 1 cut(s) 457
BbsI GAAGAC 1 cut(s) 691
Bbv12I GWGCWC 2 cut(s) 179, 194
BbvI GCAGC 2 cut(s) 40, 664
BccI CCATC 3 cut(s) 661, 748, 1110
BcnI CCSGG 2 cut(s) 77, 704
BcoDI GTCTC 2 cut(s) 258, 1150
BfaI CTAG 3 cut(s) 20, 350, 773
BfmI CTRYAG 1 cut(s) 833
BfoI RGCGCY 2 cut(s) 782, 862
BisI GCNGC 3 cut(s) 54, 678, 839
BlsI GCNGC 3 cut(s) 55, 679, 840
Bme1390I CCNGG 2 cut(s) 77, 704
Bme18I GGWCC 2 cut(s) 278, 685
BmgBI CACGTC 1 cut(s) 889
BmgT120I GGNCC 5 cut(s) 278, 453, 454, 612, 685
BmiI GGNNCC 4 cut(s) 6, 455, 601, 613
BmrFI CCNGG 2 cut(s) 77, 704
BmrI ACTGGG 3 cut(s) 73, 277, 1162
BmsI GCATC 3 cut(s) 318, 776, 1003
BmtI GCTAGC 1 cut(s) 353
BmuI ACTGGG 3 cut(s) 73, 277, 1162
BpiI GAAGAC 1 cut(s) 691
BplI GAGNNNNNCTC 2 cut(s) 181, 213
BpmI CTGGAG 1 cut(s) 421
Bpu10I CCTNAGC 2 cut(s) 133, 616
BpuEI CTTGAG 1 cut(s) 1090
BpuMI CCSGG 2 cut(s) 77, 704
BsaBI GATNNNNATC 1 cut(s) 1056
BsaJI CCNNGG 1 cut(s) 1044
BsaXI ACNNNNNCTCC 2 cut(s) 1114, 1144
Bsc4I CCNNNNNNNGG 4 cut(s) 421, 609, 1152, 1199
Bse1I ACTGG 6 cut(s) 68, 272, 404, 522, 956, 1168
Bse3DI GCAATG 1 cut(s) 748
Bse8I GATNNNNATC 1 cut(s) 1056
BseDI CCNNGG 1 cut(s) 1044
BseGI GGATG 2 cut(s) 235, 1054
BseJI GATNNNNATC 1 cut(s) 1056
BseLI CCNNNNNNNGG 4 cut(s) 421, 609, 1152, 1199
BseMI GCAATG 1 cut(s) 748
BseMII CTCAG 1 cut(s) 996
BseNI ACTGG 6 cut(s) 68, 272, 404, 522, 956, 1168
BseRI GAGGAG 6 cut(s) 186, 809, 1040, 1048, 1051, 1168
BseSI GKGCMC 1 cut(s) 457
BseXI GCAGC 2 cut(s) 40, 664
BsgI GTGCAG 1 cut(s) 491
BshFI GGCC 3 cut(s) 92, 455, 614
BshNI GGYRCC 1 cut(s) 599
BsiHKAI GWGCWC 2 cut(s) 179, 194
BsiSI CCGG 2 cut(s) 76, 704
BslFI GGGAC 1 cut(s) 92
BslI CCNNNNNNNGG 4 cut(s) 421, 609, 1152, 1199
BsmAI GTCTC 2 cut(s) 258, 1150
BsmFI GGGAC 1 cut(s) 92
BsmI GAATGC 2 cut(s) 56, 284
BsnI GGCC 3 cut(s) 92, 455, 614
Bsp120I GGGCCC 1 cut(s) 453
Bsp1286I GDGCHC 3 cut(s) 179, 194, 457
Bsp143I GATC 4 cut(s) 271, 336, 787, 815
BspACI CCGC 2 cut(s) 637, 838
BspANI GGCC 3 cut(s) 92, 455, 614
BspCNI CTCAG 1 cut(s) 997
BspLI GGNNCC 4 cut(s) 6, 455, 601, 613
BspOI GCTAGC 1 cut(s) 353
BspPI GGATC 2 cut(s) 279, 782
BspT107I GGYRCC 1 cut(s) 599
BsrDI GCAATG 1 cut(s) 748
BsrI ACTGG 6 cut(s) 68, 272, 404, 522, 956, 1168
BssECI CCNNGG 1 cut(s) 1044
BssMI GATC 4 cut(s) 271, 336, 787, 815
BssNAI GTATAC 1 cut(s) 933
BssT1I CCWWGG 1 cut(s) 1044
Bst1107I GTATAC 1 cut(s) 933
Bst4CI ACNGT 4 cut(s) 39, 181, 937, 1136
BstC8I GCNNGC 2 cut(s) 130, 351
BstDEI CTNAG 3 cut(s) 133, 616, 1005
BstF5I GGATG 2 cut(s) 235, 1054
BstH2I RGCGCY 2 cut(s) 782, 862
BstHHI GCGC 4 cut(s) 344, 622, 781, 861
BstKTI GATC 4 cut(s) 274, 339, 790, 818
BstMAI GTCTC 2 cut(s) 258, 1150
BstMBI GATC 4 cut(s) 271, 336, 787, 815
BstMWI GCNNNNNNNGC 3 cut(s) 350, 755, 764
BstNSI RCATGY 1 cut(s) 947
BstSCI CCNGG 2 cut(s) 75, 702
BstSFI CTRYAG 1 cut(s) 833
BstSLI GKGCMC 1 cut(s) 457
BstV1I GCAGC 2 cut(s) 40, 664
BstV2I GAAGAC 1 cut(s) 691
BstX2I RGATCY 1 cut(s) 271
BstYI RGATCY 1 cut(s) 271
BstZ17I GTATAC 1 cut(s) 933
BsuRI GGCC 3 cut(s) 92, 455, 614
BtrI CACGTC 1 cut(s) 889
BtsCI GGATG 2 cut(s) 235, 1054
BtsIMutI CAGTG 5 cut(s) 35, 245, 515, 1135, 1141
Cac8I GCNNGC 2 cut(s) 130, 351
CaiI CAGNNNCTG 1 cut(s) 628
CfoI GCGC 4 cut(s) 344, 622, 781, 861
Cfr13I GGNCC 5 cut(s) 278, 453, 454, 612, 685
Csp6I GTAC 2 cut(s) 150, 710
CviAII CATG 9 cut(s) 293, 355, 450, 558, 842, 925, 944, 1022, 1077
CviJI RGCY 9 cut(s) 92, 128, 353, 411, 455, 614, 628, 758, 1178
CviKI_1 RGCY 9 cut(s) 92, 128, 353, 411, 455, 614, 628, 758, 1178
CviQI GTAC 2 cut(s) 150, 710
DdeI CTNAG 3 cut(s) 133, 616, 1005
DpnI GATC 4 cut(s) 273, 338, 789, 817
DpnII GATC 4 cut(s) 271, 336, 787, 815
DraI TTTAAA 1 cut(s) 607
Eco130I CCWWGG 1 cut(s) 1044
Eco147I AGGCCT 1 cut(s) 92
Eco24I GRGCYC 1 cut(s) 457
Eco32I GATATC 1 cut(s) 1002
Eco47I GGWCC 2 cut(s) 278, 685
Eco47III AGCGCT 1 cut(s) 860
Eco57I CTGAAG 1 cut(s) 1116
EcoO109I RGGNCCY 2 cut(s) 454, 612
EcoRI GAATTC 1 cut(s) 825
EcoRV GATATC 1 cut(s) 1002
EcoT14I CCWWGG 1 cut(s) 1044
EcoT22I ATGCAT 2 cut(s) 662, 769
EcoT38I GRGCYC 1 cut(s) 457
ErhI CCWWGG 1 cut(s) 1044
FaeI CATG 9 cut(s) 296, 358, 453, 561, 845, 928, 947, 1025, 1080
FaqI GGGAC 1 cut(s) 92
FatI CATG 9 cut(s) 292, 354, 449, 557, 841, 924, 943, 1021, 1076
FauI CCCGC 1 cut(s) 644
FauNDI CATATG 1 cut(s) 656
FblI GTMKAC 1 cut(s) 932
Fnu4HI GCNGC 3 cut(s) 54, 678, 839
FokI GGATG 2 cut(s) 222, 1061
FriOI GRGCYC 1 cut(s) 457
Fsp4HI GCNGC 3 cut(s) 54, 678, 839
FspBI CTAG 3 cut(s) 20, 350, 773
GlaI GCGC 4 cut(s) 343, 621, 780, 860
GluI GCNGC 3 cut(s) 54, 678, 839
GsuI CTGGAG 1 cut(s) 421
HaeII RGCGCY 2 cut(s) 782, 862
HaeIII GGCC 3 cut(s) 92, 455, 614
HapII CCGG 2 cut(s) 76, 704
HhaI GCGC 4 cut(s) 344, 622, 781, 861
Hin1II CATG 9 cut(s) 296, 358, 453, 561, 845, 928, 947, 1025, 1080
Hin6I GCGC 4 cut(s) 342, 620, 779, 859
HinP1I GCGC 4 cut(s) 342, 620, 779, 859
HindIII AAGCTT 1 cut(s) 1176
HinfI GANTC 6 cut(s) 23, 44, 169, 185, 358, 1108
HpaII CCGG 2 cut(s) 76, 704
HphI GGTGA 1 cut(s) 152
Hpy166II GTNNAC 2 cut(s) 688, 933
Hpy188I TCNGA 6 cut(s) 174, 447, 999, 1006, 1096, 1107
Hpy188III TCNNGA 5 cut(s) 553, 785, 791, 803, 884
Hpy8I GTNNAC 2 cut(s) 688, 933
HpyAV CCTTC 2 cut(s) 380, 1112
HpyCH4III ACNGT 4 cut(s) 39, 181, 937, 1136
HpyCH4IV ACGT 2 cut(s) 721, 888
HpyCH4V TGCA 7 cut(s) 56, 98, 472, 660, 767, 974, 994
HpyF10VI GCNNNNNNNGC 3 cut(s) 350, 755, 764
HpyF3I CTNAG 3 cut(s) 133, 616, 1005
HpySE526I ACGT 2 cut(s) 721, 888
Hsp92II CATG 9 cut(s) 296, 358, 453, 561, 845, 928, 947, 1025, 1080
HspAI GCGC 4 cut(s) 342, 620, 779, 859
Kzo9I GATC 4 cut(s) 271, 336, 787, 815
LmnI GCTCC 3 cut(s) 625, 776, 1027
Lsp1109I GCAGC 2 cut(s) 40, 664
LweI GCATC 3 cut(s) 318, 776, 1003
MaeI CTAG 3 cut(s) 20, 350, 773
MaeII ACGT 2 cut(s) 721, 888
MaeIII GTNAC 3 cut(s) 33, 884, 1130
MalI GATC 4 cut(s) 273, 338, 789, 817
MboI GATC 4 cut(s) 271, 336, 787, 815
MboII GAAGA 3 cut(s) 221, 353, 691
MfeI CAATTG 2 cut(s) 153, 543
MflI RGATCY 1 cut(s) 271
MhlI GDGCHC 3 cut(s) 179, 194, 457
MlyI GAGTC 2 cut(s) 38, 178
MmeI TCCRAC 1 cut(s) 21
Mph1103I ATGCAT 2 cut(s) 662, 769
MseI TTAA 4 cut(s) 435, 510, 537, 606
MslI CAYNNNNRTG 2 cut(s) 665, 693
MspA1I CMGCKG 1 cut(s) 838
MspI CCGG 2 cut(s) 76, 704
MspR9I CCNGG 2 cut(s) 77, 704
MunI CAATTG 2 cut(s) 153, 543
Mva1269I GAATGC 2 cut(s) 56, 284
MwoI GCNNNNNNNGC 3 cut(s) 350, 755, 764
NciI CCSGG 2 cut(s) 77, 704
NdeI CATATG 1 cut(s) 656
NdeII GATC 4 cut(s) 271, 336, 787, 815
NheI GCTAGC 1 cut(s) 349
NlaIII CATG 9 cut(s) 296, 358, 453, 561, 845, 928, 947, 1025, 1080
NlaIV GGNNCC 4 cut(s) 6, 455, 601, 613
NmuCI GTSAC 3 cut(s) 33, 884, 1130
NsiI ATGCAT 2 cut(s) 662, 769
NspI RCATGY 1 cut(s) 947
PceI AGGCCT 1 cut(s) 92
PciI ACATGT 1 cut(s) 943
PctI GAATGC 2 cut(s) 56, 284
PfeI GAWTC 4 cut(s) 23, 185, 358, 1108
PfoI TCCNGGA 1 cut(s) 75
PkrI GCNGC 3 cut(s) 55, 679, 840
PleI GAGTC 2 cut(s) 38, 177
PpsI GAGTC 2 cut(s) 38, 177
PscI ACATGT 1 cut(s) 943
PsiI TTATAA 1 cut(s) 260
PspN4I GGNNCC 4 cut(s) 6, 455, 601, 613
PspOMI GGGCCC 1 cut(s) 453
PspPI GGNCC 5 cut(s) 278, 453, 454, 612, 685
PsrI GAACNNNNNNTAC 2 cut(s) 297, 329
PstNI CAGNNNCTG 1 cut(s) 628
PsuI RGATCY 1 cut(s) 271
RsaI GTAC 2 cut(s) 151, 711
RsaNI GTAC 2 cut(s) 150, 710
RseI CAYNNNNRTG 2 cut(s) 665, 693
SaqAI TTAA 4 cut(s) 435, 510, 537, 606
SatI GCNGC 3 cut(s) 54, 678, 839
Sau3AI GATC 4 cut(s) 271, 336, 787, 815
Sau96I GGNCC 5 cut(s) 278, 453, 454, 612, 685
SchI GAGTC 2 cut(s) 38, 178
ScrFI CCNGG 2 cut(s) 77, 704
SduI GDGCHC 3 cut(s) 179, 194, 457
SfaNI GCATC 3 cut(s) 318, 776, 1003
SfcI CTRYAG 1 cut(s) 833
SinI GGWCC 2 cut(s) 278, 685
SmiMI CAYNNNNRTG 2 cut(s) 665, 693
SmlI CTYRAG 1 cut(s) 1069
SmoI CTYRAG 1 cut(s) 1069
SseBI AGGCCT 1 cut(s) 92
SsiI CCGC 2 cut(s) 637, 838
SspMI CTAG 3 cut(s) 20, 350, 773
StuI AGGCCT 1 cut(s) 92
StyD4I CCNGG 2 cut(s) 75, 702
StyI CCWWGG 1 cut(s) 1044
TaaI ACNGT 4 cut(s) 39, 181, 937, 1136
TaiI ACGT 2 cut(s) 724, 891
TaqI TCGA 2 cut(s) 183, 188
TauI GCSGC 1 cut(s) 841
TfiI GAWTC 4 cut(s) 23, 185, 358, 1108
Tru1I TTAA 4 cut(s) 435, 510, 537, 606
Tru9I TTAA 4 cut(s) 435, 510, 537, 606
TscAI CASTG 5 cut(s) 42, 252, 522, 1135, 1141
TseFI GTSAC 3 cut(s) 33, 884, 1130
TseI GCWGC 2 cut(s) 53, 677
Tsp45I GTSAC 3 cut(s) 33, 884, 1130
TspDTI ATGAA 3 cut(s) 818, 941, 1065
TspRI CASTG 5 cut(s) 42, 252, 522, 1135, 1141
VpaK11BI GGWCC 2 cut(s) 278, 685
XapI RAATTY 4 cut(s) 158, 825, 865, 1088
XceI RCATGY 1 cut(s) 947
XcmI CCANNNNNNNNNTGG 1 cut(s) 514
XmiI GTMKAC 1 cut(s) 932
XspI CTAG 3 cut(s) 20, 350, 773
Zsp2I ATGCAT 2 cut(s) 662, 769
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.