Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006788

Physical Location & Seq

Genomic Coordinates Reverse (-)

29020176 .. 29023474

Gene Structure 3299 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT1G77250.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1569 bp

ATGTTCATGGAGGAGGCGACAAGTAATGGTAAAGGTACAGAGCATAATCAGCCAAATGGTTTGGTGGAAAGTGAAGCATTGAATAATTGGAGTGCAGGATGTGGTGCTATGGCTAATTCTGCAAATGCTAGTTCCAGAGATAGTAAGAAGATACAAACATATAAGCGGAGAAAACTTGGGAGATCTTATTCTGCTAATAAATGTTCGGAAAATGATAGATTTTCCATGGAAGGTGTTAGTCACTCAGAAAGCCGGGAGTCTGTCTCTTATGAAAGGTTTAGCATAAGAACCCATCTTACTGGTGAACTCCCGAAGCCTCCCAGTCCAAATAAACCATCAAGTGAATCCACCAATCATGAGACGGTGACAGCCGGTTGCCAGCATGTTCTGTCCCATGTTTTAGCTTCAAAGGAGTTTGCATCCCTAAATAGGTTACTTTCCGAAAATCTTCAAGGGGTCAAGATTGATGATTTTACGAGCAGAACTCTGATAGACACCAGGATGAAAGAGGGTGTTTATGAAGGTTCACCTCTGCTCTTTTCAACGGATCTCCAAGAGGTCTGGCAAAAAATGCAGGATGTTGGTAATGATATGGCTGTTCTTGCTAATAGTCTCTTAGAGCTTTCAAGAACCTCCTATAAGGAACAGTTGAAGCAGTTCTACACTGGGGAATCGAAGCCTTGTCCTAATGCAGAGAACATCAGAAATGACAGTGTTTCTGACATTTGCAAGCTATGTGGAGAGAAGGCAGAGGCAAGAGACTGTTTAGCATGTGATCATTGTGAAGATATGTACCATGTCTCGTGTGCACAACCTGGTGGGAAAGGGATGCCAACACACAGTTGGTATTGTCTAGACTGTACATCTAAGGGAATCGGATCACCTCATGAGAATTGTGTAGTGTGTGAAAAAATGAAAACCCAAGGGATGATGAAGACAGATAACAGATCTGTTGATACGAGTACAGAATGCAAAGAGGATTCGAACGAATCTGAAGAGAATTCAAGCTGTAACATGAATCATGAGGTGCACCACGTAGAGATGAGTAGAGATTCTGAACTCTGTAGGACCTGTGGAACAAAGGTGGATAGTGGCGGAAAGTATATAACATGTGATCACCCTTTTTGCCCACACAAGTATTACCACATCAGGTGCTTGACTTCAAGGCAAATAAAACTACACGGTGTCCGTTGGTATTGCTCGTCATGCTTATGCAGAAATTGCCTAACTGACAAGGATGATGATAAAATCGTCTTGTGTGATGGGTGTGATGATGCATATCACATCTATTGCATGCGACCTCCATGTGAATCGGTTCCAAATGGAGAATGGTTTTGCACAGCATGTAAAGCTGCAATTCTTAAAGTCCAAAAAGCACGAAAGGCTTTTGAGAAGAAGATGGAGACGGTGCAGAAACAGAAAGGAATAAAACCCAAGAATCTCCAAGGCAAACCGCAAAGTAAAGACAATGGAGAATTGGATCAAAGCGTAGGAGGAATGGACATGCTTCTAAACGCAGCTGACACACTGAAAGATGAAGAACAGATGACATTCCAATCCATCAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

522

Amino Acids

58.38

Weight (kDa)

6.16

Isoelectric Point (pI)

51.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PHD	PF00628	243 - 287	5.2e-06	PHD-finger
PHD	PF00628	405 - 449	4.9e-10	PHD-finger

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77250
fragaria_vesca	FvH4_2g28030 FvH4_2g28030
malus_domestica	MD08G1160700.v1.1 MD15G1132400.v1.1
prunus_persica	Prupe.1G487600_v2.0.a1 Prupe.1G487600_v2.0.a1 Prupe.1G487600_v2.0.a1 Prupe.1G487600_v2.0.a1 Prupe.1G487600_v2.0.a1 Prupe.1G487600_v2.0.a1
pyrus_communis	pycom08g13450 pycom15g11950
rosa_chinensis	RchiOBHm_Chr6g0296911
rosa_laevigata	RLG00000011647
rosa_multiflora	Rmu_co8128438.1_g000001 Rmu_sc0007272.1_g000001 Rmu_sc0018303.1_g000003
rosa_roxburghii	Rroxscaffold_7G00171040
rosa_rugosa	Rorug06G0267500 Rorug06G0267600
rosa_samantha	Rh6AG378200 Rh6BG386200 Rh6CG391600 Rh6DG378900
rosa_wichuraiana	Rw6G033060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	166, 1095, 1454
AclWI	GGATC	3 cut(s)	555, 886, 1488
AcsI	RAATTY	1 cut(s)	1000
AcuI	CTGAAG	1 cut(s)	1014
AfaI	GTAC	4 cut(s)	37, 794, 862, 964
AfiI	CCNNNNNNNGG	1 cut(s)	429
AflIII	ACRYGT	1 cut(s)	1109
AgsI	TTSAA	8 cut(s)	82, 408, 452, 543, 627, 652, 1005, 1164
AjnI	CCWGG	2 cut(s)	497, 814
AluBI	AGCT	6 cut(s)	404, 622, 733, 1008, 1352, 1520
AluI	AGCT	6 cut(s)	404, 622, 733, 1008, 1352, 1520
Alw21I	GWGCWC	2 cut(s)	811, 1032
Alw26I	GTCTC	6 cut(s)	268, 353, 617, 753, 805, 1397
Alw44I	GTGCAC	2 cut(s)	807, 1028
AlwI	GGATC	3 cut(s)	555, 886, 1488
ApaLI	GTGCAC	2 cut(s)	807, 1028
ApeKI	GCWGC	2 cut(s)	1352, 1517
ApoI	RAATTY	1 cut(s)	1000
Asp700I	GAANNNNTTC	3 cut(s)	447, 656, 1314
AspS9I	GGNCC	1 cut(s)	1068
AsuC2I	CCSGG	1 cut(s)	254
AsuHPI	GGTGA	5 cut(s)	314, 376, 519, 873, 1109
AsuII	TTCGAA	1 cut(s)	983
AvaII	GGWCC	1 cut(s)	1068
BaeGI	GKGCMC	2 cut(s)	811, 1032
BarI	GAAGNNNNNNTAC	2 cut(s)	644, 676
BauI	CACGAG	1 cut(s)	802
BbsI	GAAGAC	1 cut(s)	941
Bbv12I	GWGCWC	2 cut(s)	811, 1032
BbvI	GCAGC	2 cut(s)	1339, 1529
BccI	CCATC	5 cut(s)	300, 343, 1256, 1393, 1568
BciT130I	CCWGG	2 cut(s)	499, 816
BclI	TGATCA	2 cut(s)	775, 1114
BcnI	CCSGG	1 cut(s)	254
BcoDI	GTCTC	6 cut(s)	268, 353, 617, 753, 805, 1397
BfaI	CTAG	2 cut(s)	129, 854
BfmI	CTRYAG	1 cut(s)	1063
BglII	AGATCT	2 cut(s)	182, 947
BisI	GCNGC	2 cut(s)	1353, 1518
BlsI	GCNGC	2 cut(s)	1354, 1519
Bme1390I	CCNGG	3 cut(s)	254, 499, 816
Bme18I	GGWCC	1 cut(s)	1068
BmgT120I	GGNCC	1 cut(s)	1068
BmiI	GGNNCC	1 cut(s)	1317
BmrFI	CCNGG	3 cut(s)	254, 499, 816
BmrI	ACTGGG	2 cut(s)	315, 675
BmsI	GCATC	3 cut(s)	428, 819, 1264
BmuI	ACTGGG	2 cut(s)	315, 675
BpiI	GAAGAC	1 cut(s)	941
BplI	GAGNNNNNCTC	4 cut(s)	248, 280, 469, 501
Bpu14I	TTCGAA	1 cut(s)	983
BpuMI	CCSGG	1 cut(s)	254
BsaAI	YACGTR	1 cut(s)	1036
BsaBI	GATNNNNATC	1 cut(s)	1278
BsaJI	CCNNGG	3 cut(s)	225, 922, 1444
Bsc4I	CCNNNNNNNGG	1 cut(s)	429
Bse118I	RCCGGY	1 cut(s)	371
Bse1I	ACTGG	3 cut(s)	304, 321, 670
Bse8I	GATNNNNATC	1 cut(s)	1278
BseBI	CCWGG	2 cut(s)	499, 816
BseDI	CCNNGG	3 cut(s)	225, 922, 1444
BseGI	GGATG	7 cut(s)	104, 419, 507, 583, 834, 933, 1243
BseJI	GATNNNNATC	1 cut(s)	1278
BseLI	CCNNNNNNNGG	1 cut(s)	429
BseMII	CTCAG	1 cut(s)	258
BseNI	ACTGG	3 cut(s)	304, 321, 670
BseRI	GAGGAG	1 cut(s)	26
BseSI	GKGCMC	2 cut(s)	811, 1032
BseXI	GCAGC	2 cut(s)	1339, 1529
BsgI	GTGCAG	2 cut(s)	114, 1430
BsiHKAI	GWGCWC	2 cut(s)	811, 1032
BsiSI	CCGG	2 cut(s)	253, 372
BslFI	GGGAC	1 cut(s)	376
BslI	CCNNNNNNNGG	1 cut(s)	429
BsmAI	GTCTC	6 cut(s)	268, 353, 617, 753, 805, 1397
BsmBI	CGTCTC	2 cut(s)	353, 1397
BsmFI	GGGAC	1 cut(s)	376
BsmI	GAATGC	1 cut(s)	974
Bsp119I	TTCGAA	1 cut(s)	983
Bsp1286I	GDGCHC	2 cut(s)	811, 1032
Bsp1407I	TGTACA	1 cut(s)	860
Bsp143I	GATC	7 cut(s)	182, 547, 775, 878, 947, 1114, 1480
Bsp19I	CCATGG	1 cut(s)	225
BspACI	CCGC	3 cut(s)	166, 1095, 1454
BspCNI	CTCAG	1 cut(s)	257
BspHI	TCATGA	3 cut(s)	355, 886, 1021
BspLI	GGNNCC	1 cut(s)	1317
BspPI	GGATC	3 cut(s)	555, 886, 1488
BspT104I	TTCGAA	1 cut(s)	983
BsrFI	RCCGGY	1 cut(s)	371
BsrGI	TGTACA	1 cut(s)	860
BsrI	ACTGG	3 cut(s)	304, 321, 670
BssAI	RCCGGY	1 cut(s)	371
BssECI	CCNNGG	3 cut(s)	225, 922, 1444
BssMI	GATC	7 cut(s)	182, 547, 775, 878, 947, 1114, 1480
BssSI	CACGAG	1 cut(s)	802
BssT1I	CCWWGG	3 cut(s)	225, 922, 1444
Bst2BI	CACGAG	1 cut(s)	802
Bst2UI	CCWGG	2 cut(s)	499, 816
Bst4CI	ACNGT	8 cut(s)	364, 648, 713, 764, 842, 860, 1184, 1408
Bst6I	CTCTTC	1 cut(s)	990
BstAPI	GCANNNNNTGC	2 cut(s)	571, 1221
BstAUI	TGTACA	1 cut(s)	860
BstBAI	YACGTR	1 cut(s)	1036
BstBI	TTCGAA	1 cut(s)	983
BstC8I	GCNNGC	3 cut(s)	380, 731, 1295
BstDEI	CTNAG	3 cut(s)	244, 616, 867
BstDSI	CCRYGG	1 cut(s)	225
BstF5I	GGATG	7 cut(s)	104, 419, 507, 583, 834, 933, 1243
BstKTI	GATC	7 cut(s)	185, 550, 778, 881, 950, 1117, 1483
BstMAI	GTCTC	6 cut(s)	268, 353, 617, 753, 805, 1397
BstMBI	GATC	7 cut(s)	182, 547, 775, 878, 947, 1114, 1480
BstMWI	GCNNNNNNNGC	8 cut(s)	49, 119, 571, 602, 1206, 1221, 1349, 1382
BstNI	CCWGG	2 cut(s)	499, 816
BstNSI	RCATGY	6 cut(s)	386, 774, 1113, 1297, 1347, 1507
BstSCI	CCNGG	3 cut(s)	252, 497, 814
BstSFI	CTRYAG	1 cut(s)	1063
BstSLI	GKGCMC	2 cut(s)	811, 1032
BstV1I	GCAGC	2 cut(s)	1339, 1529
BstV2I	GAAGAC	1 cut(s)	941
BstX2I	RGATCY	3 cut(s)	182, 547, 947
BstXI	CCANNNNNNTGG	1 cut(s)	299
BstYI	RGATCY	3 cut(s)	182, 547, 947
BtgI	CCRYGG	1 cut(s)	225
BtsCI	GGATG	7 cut(s)	104, 419, 507, 583, 834, 933, 1243
BtsIMutI	CAGTG	3 cut(s)	663, 718, 1526
Cac8I	GCNNGC	3 cut(s)	380, 731, 1295
CciI	TCATGA	3 cut(s)	355, 886, 1021
Cfr10I	RCCGGY	1 cut(s)	371
Cfr13I	GGNCC	1 cut(s)	1068
CsiI	ACCWGGT	1 cut(s)	814
Csp6I	GTAC	4 cut(s)	36, 793, 861, 963
CspCI	CAANNNNNGTGG	2 cut(s)	718, 753
CviQI	GTAC	4 cut(s)	36, 793, 861, 963
DdeI	CTNAG	3 cut(s)	244, 616, 867
DpnI	GATC	7 cut(s)	184, 549, 777, 880, 949, 1116, 1482
DpnII	GATC	7 cut(s)	182, 547, 775, 878, 947, 1114, 1480
Eam1104I	CTCTTC	1 cut(s)	990
EarI	CTCTTC	1 cut(s)	990
EciI	GGCGGA	1 cut(s)	1110
Eco130I	CCWWGG	3 cut(s)	225, 922, 1444
Eco47I	GGWCC	1 cut(s)	1068
Eco57I	CTGAAG	1 cut(s)	1014
EcoO109I	RGGNCCY	1 cut(s)	1068
EcoRI	GAATTC	1 cut(s)	1000
EcoRII	CCWGG	2 cut(s)	497, 814
EcoT14I	CCWWGG	3 cut(s)	225, 922, 1444
EcoT22I	ATGCAT	1 cut(s)	1279
ErhI	CCWWGG	3 cut(s)	225, 922, 1444
Esp3I	CGTCTC	2 cut(s)	353, 1397
FaqI	GGGAC	1 cut(s)	376
FbaI	TGATCA	2 cut(s)	775, 1114
Fnu4HI	GCNGC	2 cut(s)	1353, 1518
FokI	GGATG	7 cut(s)	111, 406, 514, 590, 841, 940, 1250
Fsp4HI	GCNGC	2 cut(s)	1353, 1518
FspBI	CTAG	2 cut(s)	129, 854
GluI	GCNGC	2 cut(s)	1353, 1518
HapII	CCGG	2 cut(s)	253, 372
HpaII	CCGG	2 cut(s)	253, 372
HphI	GGTGA	5 cut(s)	314, 376, 519, 873, 1109
Hpy166II	GTNNAC	4 cut(s)	305, 527, 809, 1030
Hpy188I	TCNGA	9 cut(s)	208, 247, 442, 489, 704, 721, 878, 994, 1057
Hpy188III	TCNNGA	8 cut(s)	135, 310, 356, 460, 627, 854, 887, 1022
Hpy8I	GTNNAC	4 cut(s)	305, 527, 809, 1030
HpyAV	CCTTC	3 cut(s)	224, 515, 739
HpyCH4III	ACNGT	8 cut(s)	364, 648, 713, 764, 842, 860, 1184, 1408
HpyCH4IV	ACGT	1 cut(s)	1035
HpyF10VI	GCNNNNNNNGC	8 cut(s)	49, 119, 571, 602, 1206, 1221, 1349, 1382
HpyF3I	CTNAG	3 cut(s)	244, 616, 867
HpySE526I	ACGT	1 cut(s)	1035
Ksp22I	TGATCA	2 cut(s)	775, 1114
Kzo9I	GATC	7 cut(s)	182, 547, 775, 878, 947, 1114, 1480
Lsp1109I	GCAGC	2 cut(s)	1339, 1529
LweI	GCATC	3 cut(s)	428, 819, 1264
MabI	ACCWGGT	1 cut(s)	814
MaeI	CTAG	2 cut(s)	129, 854
MaeII	ACGT	1 cut(s)	1035
MaeIII	GTNAC	4 cut(s)	239, 364, 432, 1010
MalI	GATC	7 cut(s)	184, 549, 777, 880, 949, 1116, 1482
MboI	GATC	7 cut(s)	182, 547, 775, 878, 947, 1114, 1480
MboII	GAAGA	8 cut(s)	160, 440, 797, 946, 1007, 1405, 1408, 1550
MflI	RGATCY	3 cut(s)	182, 547, 947
MhlI	GDGCHC	2 cut(s)	811, 1032
MluCI	AATT	7 cut(s)	85, 115, 892, 1000, 1219, 1356, 1475
MlyI	GAGTC	1 cut(s)	266
Mph1103I	ATGCAT	1 cut(s)	1279
MroXI	GAANNNNTTC	3 cut(s)	447, 656, 1314
MseI	TTAA	1 cut(s)	1362
MslI	CAYNNNNRTG	2 cut(s)	500, 1210
MspA1I	CMGCKG	1 cut(s)	1520
MspI	CCGG	2 cut(s)	253, 372
MspR9I	CCNGG	3 cut(s)	254, 499, 816
Mva1269I	GAATGC	1 cut(s)	974
MvaI	CCWGG	2 cut(s)	499, 816
MwoI	GCNNNNNNNGC	8 cut(s)	49, 119, 571, 602, 1206, 1221, 1349, 1382
NciI	CCSGG	1 cut(s)	254
NcoI	CCATGG	1 cut(s)	225
NdeII	GATC	7 cut(s)	182, 547, 775, 878, 947, 1114, 1480
NlaIV	GGNNCC	1 cut(s)	1317
NmuCI	GTSAC	2 cut(s)	239, 364
NsiI	ATGCAT	1 cut(s)	1279
NspI	RCATGY	6 cut(s)	386, 774, 1113, 1297, 1347, 1507
NspV	TTCGAA	1 cut(s)	983
PaeI	GCATGC	1 cut(s)	1297
PagI	TCATGA	3 cut(s)	355, 886, 1021
PciI	ACATGT	1 cut(s)	1109
PctI	GAATGC	1 cut(s)	974
PdmI	GAANNNNTTC	3 cut(s)	447, 656, 1314
PfeI	GAWTC	9 cut(s)	344, 671, 873, 980, 989, 1018, 1052, 1310, 1438
PkrI	GCNGC	2 cut(s)	1354, 1519
PleI	GAGTC	1 cut(s)	265
PpsI	GAGTC	1 cut(s)	265
Ppu21I	YACGTR	1 cut(s)	1036
PpuMI	RGGWCCY	1 cut(s)	1068
PscI	ACATGT	1 cut(s)	1109
Psp5II	RGGWCCY	1 cut(s)	1068
Psp6I	CCWGG	2 cut(s)	497, 814
PspGI	CCWGG	2 cut(s)	497, 814
PspN4I	GGNNCC	1 cut(s)	1317
PspPI	GGNCC	1 cut(s)	1068
PspPPI	RGGWCCY	1 cut(s)	1068
PsrI	GAACNNNNNNTAC	2 cut(s)	280, 312
PsuI	RGATCY	3 cut(s)	182, 547, 947
PvuII	CAGCTG	1 cut(s)	1520
RsaI	GTAC	4 cut(s)	37, 794, 862, 964
RsaNI	GTAC	4 cut(s)	36, 793, 861, 963
RseI	CAYNNNNRTG	2 cut(s)	500, 1210
SaqAI	TTAA	1 cut(s)	1362
SatI	GCNGC	2 cut(s)	1353, 1518
Sau3AI	GATC	7 cut(s)	182, 547, 775, 878, 947, 1114, 1480
Sau96I	GGNCC	1 cut(s)	1068
SchI	GAGTC	1 cut(s)	266
ScrFI	CCNGG	3 cut(s)	254, 499, 816
SduI	GDGCHC	2 cut(s)	811, 1032
SexAI	ACCWGGT	1 cut(s)	814
SfaNI	GCATC	3 cut(s)	428, 819, 1264
SfcI	CTRYAG	1 cut(s)	1063
SfuI	TTCGAA	1 cut(s)	983
SinI	GGWCC	1 cut(s)	1068
SmiMI	CAYNNNNRTG	2 cut(s)	500, 1210
SphI	GCATGC	1 cut(s)	1297
Sse9I	AATT	7 cut(s)	85, 115, 892, 1000, 1219, 1356, 1475
SsiI	CCGC	3 cut(s)	166, 1095, 1454
SspMI	CTAG	2 cut(s)	129, 854
StyD4I	CCNGG	3 cut(s)	252, 497, 814
StyI	CCWWGG	3 cut(s)	225, 922, 1444
TaaI	ACNGT	8 cut(s)	364, 648, 713, 764, 842, 860, 1184, 1408
TaiI	ACGT	1 cut(s)	1038
TaqI	TCGA	2 cut(s)	674, 983
TasI	AATT	7 cut(s)	85, 115, 892, 1000, 1219, 1356, 1475
TatI	WGTACW	2 cut(s)	860, 962
TfiI	GAWTC	9 cut(s)	344, 671, 873, 980, 989, 1018, 1052, 1310, 1438
Tru1I	TTAA	1 cut(s)	1362
Tru9I	TTAA	1 cut(s)	1362
TscAI	CASTG	3 cut(s)	670, 718, 1533
TseFI	GTSAC	2 cut(s)	239, 364
TseI	GCWGC	2 cut(s)	1352, 1517
Tsp45I	GTSAC	2 cut(s)	239, 364
TspDTI	ATGAA	7 cut(s)	285, 518, 534, 929, 947, 1031, 1551
TspGWI	ACGGA	2 cut(s)	560, 1178
TspRI	CASTG	3 cut(s)	670, 718, 1533
VneI	GTGCAC	2 cut(s)	807, 1028
VpaK11BI	GGWCC	1 cut(s)	1068
XapI	RAATTY	1 cut(s)	1000
XbaI	TCTAGA	1 cut(s)	853
XceI	RCATGY	6 cut(s)	386, 774, 1113, 1297, 1347, 1507
XcmI	CCANNNNNNNNNTGG	2 cut(s)	840, 1326
XmnI	GAANNNNTTC	3 cut(s)	447, 656, 1314
XspI	CTAG	2 cut(s)	129, 854
Zsp2I	ATGCAT	1 cut(s)	1279

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.