PHD-finger
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G77250 |
| fragaria_vesca | FvH4_2g28030 FvH4_2g28030 |
| malus_domestica | MD08G1160700.v1.1 MD15G1132400.v1.1 |
| prunus_persica | Prupe.1G487600_v2.0.a1 Prupe.1G487600_v2.0.a1 Prupe.1G487600_v2.0.a1 Prupe.1G487600_v2.0.a1 Prupe.1G487600_v2.0.a1 Prupe.1G487600_v2.0.a1 |
| pyrus_communis | pycom08g13450 pycom15g11950 |
| rosa_chinensis | RchiOBHm_Chr6g0296911 |
| rosa_laevigata | RLG00000011647 |
| rosa_multiflora | Rmu_co8128438.1_g000001 Rmu_sc0007272.1_g000001 Rmu_sc0018303.1_g000003 |
| rosa_roxburghii | Rroxscaffold_7G00171040 |
| rosa_rugosa | Rorug06G0267500 Rorug06G0267600 |
| rosa_samantha | Rh6AG378200 Rh6BG386200 Rh6CG391600 Rh6DG378900 |
| rosa_wichuraiana | Rw6G033060 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 537 |
| AccI | GTMKAC | 1 cut(s) | 990 |
| AccII | CGCG | 1 cut(s) | 1465 |
| AciI | CCGC | 3 cut(s) | 260, 1163, 1227 |
| AclWI | GGATC | 1 cut(s) | 1711 |
| AcoI | YGGCCR | 1 cut(s) | 515 |
| AcsI | RAATTY | 3 cut(s) | 685, 1383, 1852 |
| AcuI | CTGAAG | 2 cut(s) | 30, 1335 |
| AfaI | GTAC | 7 cut(s) | 360, 405, 513, 826, 1073, 1291, 1415 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 266 |
| AflIII | ACRYGT | 3 cut(s) | 369, 861, 906 |
| AgeI | ACCGGT | 1 cut(s) | 545 |
| AjiI | CACGTC | 1 cut(s) | 615 |
| AjnI | CCWGG | 2 cut(s) | 426, 882 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 81, 113 |
| AluBI | AGCT | 7 cut(s) | 56, 123, 215, 811, 931, 1496, 1661 |
| AluI | AGCT | 7 cut(s) | 56, 123, 215, 811, 931, 1496, 1661 |
| Alw26I | GTCTC | 2 cut(s) | 649, 1505 |
| AlwI | GGATC | 1 cut(s) | 1711 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 1014 |
| AoxI | GGCC | 4 cut(s) | 268, 430, 515, 530 |
| ApaI | GGGCCC | 1 cut(s) | 272 |
| ApeKI | GCWGC | 5 cut(s) | 53, 120, 505, 1542, 1814 |
| ApoI | RAATTY | 3 cut(s) | 685, 1383, 1852 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 698, 730 |
| AsiGI | ACCGGT | 1 cut(s) | 545 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 1236 |
| AspS9I | GGNCC | 6 cut(s) | 244, 268, 269, 430, 530, 880 |
| AsuC2I | CCSGG | 1 cut(s) | 272 |
| AsuHPI | GGTGA | 9 cut(s) | 41, 485, 716, 759, 1152, 1241, 1283, 1382, 1390 |
| AsuII | TTCGAA | 1 cut(s) | 912 |
| AvaII | GGWCC | 2 cut(s) | 244, 880 |
| BaeGI | GKGCMC | 1 cut(s) | 272 |
| BanII | GRGCYC | 1 cut(s) | 272 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 387, 419 |
| BbsI | GAAGAC | 1 cut(s) | 1332 |
| BbvI | GCAGC | 5 cut(s) | 65, 132, 492, 1529, 1801 |
| BccI | CCATC | 8 cut(s) | 200, 312, 441, 1211, 1292, 1369, 1532, 1727 |
| BceAI | ACGGC | 3 cut(s) | 341, 530, 1452 |
| BciT130I | CCWGG | 2 cut(s) | 428, 884 |
| BclI | TGATCA | 1 cut(s) | 448 |
| BcnI | CCSGG | 1 cut(s) | 272 |
| BcoDI | GTCTC | 2 cut(s) | 649, 1505 |
| BfaI | CTAG | 3 cut(s) | 582, 1046, 1211 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 514 |
| BisI | GCNGC | 5 cut(s) | 54, 121, 506, 1543, 1815 |
| BlsI | GCNGC | 5 cut(s) | 55, 122, 507, 1544, 1816 |
| BmcAI | AGTACT | 1 cut(s) | 1415 |
| Bme1390I | CCNGG | 3 cut(s) | 272, 428, 884 |
| Bme18I | GGWCC | 2 cut(s) | 244, 880 |
| BmgBI | CACGTC | 1 cut(s) | 615 |
| BmgT120I | GGNCC | 6 cut(s) | 244, 268, 269, 430, 530, 880 |
| BmiI | GGNNCC | 2 cut(s) | 270, 531 |
| BmrFI | CCNGG | 3 cut(s) | 272, 428, 884 |
| BmsI | GCATC | 3 cut(s) | 423, 604, 1166 |
| BoxI | GACNNNNGTC | 1 cut(s) | 249 |
| BpiI | GAAGAC | 1 cut(s) | 1332 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1485, 1517 |
| BpmI | CTGGAG | 2 cut(s) | 367, 986 |
| Bpu10I | CCTNAGC | 1 cut(s) | 48 |
| Bpu14I | TTCGAA | 1 cut(s) | 912 |
| BpuEI | CTTGAG | 1 cut(s) | 721 |
| BpuMI | CCSGG | 1 cut(s) | 272 |
| BsaJI | CCNNGG | 4 cut(s) | 126, 426, 427, 939 |
| BsaWI | WCCGGW | 1 cut(s) | 545 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 179, 209, 1027, 1057, 1344, 1374 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 266 |
| Bse118I | RCCGGY | 1 cut(s) | 545 |
| Bse1I | ACTGG | 6 cut(s) | 263, 350, 366, 509, 518, 969 |
| Bse3DI | GCAATG | 1 cut(s) | 31 |
| BseBI | CCWGG | 2 cut(s) | 428, 884 |
| BseDI | CCNNGG | 4 cut(s) | 126, 426, 427, 939 |
| BseGI | GGATG | 5 cut(s) | 473, 565, 747, 1393, 1771 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 266 |
| BseMI | GCAATG | 1 cut(s) | 31 |
| BseMII | CTCAG | 2 cut(s) | 348, 1812 |
| BseNI | ACTGG | 6 cut(s) | 263, 350, 366, 509, 518, 969 |
| BseRI | GAGGAG | 1 cut(s) | 1079 |
| BseSI | GKGCMC | 1 cut(s) | 272 |
| BseXI | GCAGC | 5 cut(s) | 65, 132, 492, 1529, 1801 |
| Bsh1236I | CGCG | 1 cut(s) | 1465 |
| BshFI | GGCC | 4 cut(s) | 270, 432, 517, 532 |
| BshTI | ACCGGT | 1 cut(s) | 545 |
| BsiSI | CCGG | 2 cut(s) | 272, 546 |
| BslFI | GGGAC | 1 cut(s) | 145 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 266 |
| BsmAI | GTCTC | 2 cut(s) | 649, 1505 |
| BsmFI | GGGAC | 1 cut(s) | 145 |
| BsmI | GAATGC | 1 cut(s) | 1086 |
| BsnI | GGCC | 4 cut(s) | 270, 432, 517, 532 |
| Bsp119I | TTCGAA | 1 cut(s) | 912 |
| Bsp120I | GGGCCC | 1 cut(s) | 268 |
| Bsp1286I | GDGCHC | 1 cut(s) | 272 |
| Bsp1407I | TGTACA | 1 cut(s) | 403 |
| Bsp143I | GATC | 4 cut(s) | 448, 1546, 1703, 1795 |
| BspACI | CCGC | 3 cut(s) | 260, 1163, 1227 |
| BspANI | GGCC | 4 cut(s) | 270, 432, 517, 532 |
| BspCNI | CTCAG | 2 cut(s) | 347, 1813 |
| BspFNI | CGCG | 1 cut(s) | 1465 |
| BspLI | GGNNCC | 2 cut(s) | 270, 531 |
| BspPI | GGATC | 1 cut(s) | 1711 |
| BspQI | GCTCTTC | 3 cut(s) | 110, 583, 782 |
| BspT104I | TTCGAA | 1 cut(s) | 912 |
| BsrDI | GCAATG | 1 cut(s) | 31 |
| BsrFI | RCCGGY | 1 cut(s) | 545 |
| BsrGI | TGTACA | 1 cut(s) | 403 |
| BsrI | ACTGG | 6 cut(s) | 263, 350, 366, 509, 518, 969 |
| BssAI | RCCGGY | 1 cut(s) | 545 |
| BssECI | CCNNGG | 4 cut(s) | 126, 426, 427, 939 |
| BssMI | GATC | 4 cut(s) | 448, 1546, 1703, 1795 |
| BssNAI | GTATAC | 1 cut(s) | 991 |
| BssT1I | CCWWGG | 2 cut(s) | 126, 939 |
| Bst1107I | GTATAC | 1 cut(s) | 991 |
| Bst2UI | CCWGG | 2 cut(s) | 428, 884 |
| Bst4CI | ACNGT | 5 cut(s) | 604, 997, 1016, 1258, 1311 |
| Bst6I | CTCTTC | 4 cut(s) | 110, 583, 782, 1311 |
| BstAUI | TGTACA | 1 cut(s) | 403 |
| BstBI | TTCGAA | 1 cut(s) | 912 |
| BstC8I | GCNNGC | 5 cut(s) | 296, 1010, 1201, 1463, 1779 |
| BstDEI | CTNAG | 4 cut(s) | 48, 334, 640, 1821 |
| BstF5I | GGATG | 5 cut(s) | 473, 565, 747, 1393, 1771 |
| BstFNI | CGCG | 1 cut(s) | 1465 |
| BstKTI | GATC | 4 cut(s) | 451, 1549, 1706, 1798 |
| BstMAI | GTCTC | 2 cut(s) | 649, 1505 |
| BstMBI | GATC | 4 cut(s) | 448, 1546, 1703, 1795 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 53, 514, 1658 |
| BstNI | CCWGG | 2 cut(s) | 428, 884 |
| BstNSI | RCATGY | 5 cut(s) | 373, 626, 865, 1169, 1781 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 249 |
| BstSCI | CCNGG | 3 cut(s) | 270, 426, 882 |
| BstSLI | GKGCMC | 1 cut(s) | 272 |
| BstUI | CGCG | 1 cut(s) | 1465 |
| BstV1I | GCAGC | 5 cut(s) | 65, 132, 492, 1529, 1801 |
| BstV2I | GAAGAC | 1 cut(s) | 1332 |
| BstZ17I | GTATAC | 1 cut(s) | 991 |
| BsuRI | GGCC | 4 cut(s) | 270, 432, 517, 532 |
| BtrI | CACGTC | 1 cut(s) | 615 |
| BtsCI | GGATG | 5 cut(s) | 473, 565, 747, 1393, 1771 |
| BtsI | GCAGTG | 2 cut(s) | 455, 1140 |
| BtsIMutI | CAGTG | 7 cut(s) | 270, 343, 455, 993, 1012, 1140, 1503 |
| Cac8I | GCNNGC | 5 cut(s) | 296, 1010, 1201, 1463, 1779 |
| CaiI | CAGNNNCTG | 1 cut(s) | 1014 |
| Cfr10I | RCCGGY | 1 cut(s) | 545 |
| Cfr13I | GGNCC | 6 cut(s) | 244, 268, 269, 430, 530, 880 |
| CseI | GACGC | 2 cut(s) | 239, 1634 |
| CsiI | ACCWGGT | 1 cut(s) | 882 |
| Csp6I | GTAC | 7 cut(s) | 359, 404, 512, 825, 1072, 1290, 1414 |
| CspAI | ACCGGT | 1 cut(s) | 545 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1330, 1365 |
| CviQI | GTAC | 7 cut(s) | 359, 404, 512, 825, 1072, 1290, 1414 |
| DdeI | CTNAG | 4 cut(s) | 48, 334, 640, 1821 |
| DpnI | GATC | 4 cut(s) | 450, 1548, 1705, 1797 |
| DpnII | GATC | 4 cut(s) | 448, 1546, 1703, 1795 |
| EaeI | YGGCCR | 1 cut(s) | 515 |
| Eam1104I | CTCTTC | 4 cut(s) | 110, 583, 782, 1311 |
| EarI | CTCTTC | 4 cut(s) | 110, 583, 782, 1311 |
| EciI | GGCGGA | 1 cut(s) | 249 |
| Eco130I | CCWWGG | 2 cut(s) | 126, 939 |
| Eco24I | GRGCYC | 1 cut(s) | 272 |
| Eco47I | GGWCC | 2 cut(s) | 244, 880 |
| Eco57I | CTGAAG | 2 cut(s) | 30, 1335 |
| EcoO109I | RGGNCCY | 1 cut(s) | 530 |
| EcoRII | CCWGG | 2 cut(s) | 426, 882 |
| EcoT14I | CCWWGG | 2 cut(s) | 126, 939 |
| EcoT38I | GRGCYC | 1 cut(s) | 272 |
| ErhI | CCWWGG | 2 cut(s) | 126, 939 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 291, 323 |
| FaqI | GGGAC | 1 cut(s) | 145 |
| FbaI | TGATCA | 1 cut(s) | 448 |
| FblI | GTMKAC | 1 cut(s) | 990 |
| Fnu4HI | GCNGC | 5 cut(s) | 54, 121, 506, 1543, 1815 |
| FokI | GGATG | 5 cut(s) | 480, 572, 754, 1380, 1778 |
| FriOI | GRGCYC | 1 cut(s) | 272 |
| Fsp4HI | GCNGC | 5 cut(s) | 54, 121, 506, 1543, 1815 |
| FspBI | CTAG | 3 cut(s) | 582, 1046, 1211 |
| GluI | GCNGC | 5 cut(s) | 54, 121, 506, 1543, 1815 |
| GsuI | CTGGAG | 2 cut(s) | 367, 986 |
| HaeIII | GGCC | 4 cut(s) | 270, 432, 517, 532 |
| HapII | CCGG | 2 cut(s) | 272, 546 |
| HgaI | GACGC | 2 cut(s) | 239, 1634 |
| HindIII | AAGCTT | 1 cut(s) | 809 |
| HinfI | GANTC | 8 cut(s) | 232, 696, 764, 944, 950, 1055, 1333, 1844 |
| HpaII | CCGG | 2 cut(s) | 272, 546 |
| HphI | GGTGA | 9 cut(s) | 41, 485, 716, 759, 1152, 1241, 1283, 1382, 1390 |
| Hpy166II | GTNNAC | 4 cut(s) | 244, 404, 476, 991 |
| Hpy188III | TCNNGA | 5 cut(s) | 440, 523, 1595, 1786, 1841 |
| Hpy8I | GTNNAC | 4 cut(s) | 244, 404, 476, 991 |
| Hpy99I | CGWCG | 1 cut(s) | 616 |
| HpyAV | CCTTC | 6 cut(s) | 8, 389, 520, 1488, 1592, 1694 |
| HpyCH4III | ACNGT | 5 cut(s) | 604, 997, 1016, 1258, 1311 |
| HpyCH4IV | ACGT | 3 cut(s) | 108, 614, 908 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 53, 514, 1658 |
| HpyF3I | CTNAG | 4 cut(s) | 48, 334, 640, 1821 |
| HpySE526I | ACGT | 3 cut(s) | 108, 614, 908 |
| Ksp22I | TGATCA | 1 cut(s) | 448 |
| Kzo9I | GATC | 4 cut(s) | 448, 1546, 1703, 1795 |
| LguI | GCTCTTC | 3 cut(s) | 110, 583, 782 |
| LmnI | GCTCC | 3 cut(s) | 68, 128, 967 |
| Lsp1109I | GCAGC | 5 cut(s) | 65, 132, 492, 1529, 1801 |
| LweI | GCATC | 3 cut(s) | 423, 604, 1166 |
| MabI | ACCWGGT | 1 cut(s) | 882 |
| MaeI | CTAG | 3 cut(s) | 582, 1046, 1211 |
| MaeII | ACGT | 3 cut(s) | 108, 614, 908 |
| MaeIII | GTNAC | 5 cut(s) | 104, 541, 678, 704, 1622 |
| MalI | GATC | 4 cut(s) | 450, 1548, 1705, 1797 |
| MboI | GATC | 4 cut(s) | 448, 1546, 1703, 1795 |
| MfeI | CAATTG | 1 cut(s) | 1707 |
| MhlI | GDGCHC | 1 cut(s) | 272 |
| MlyI | GAGTC | 3 cut(s) | 241, 944, 1838 |
| MmeI | TCCRAC | 1 cut(s) | 868 |
| MroXI | GAANNNNTTC | 1 cut(s) | 1236 |
| MseI | TTAA | 3 cut(s) | 723, 732, 1448 |
| MspI | CCGG | 2 cut(s) | 272, 546 |
| MspR9I | CCNGG | 3 cut(s) | 272, 428, 884 |
| MunI | CAATTG | 1 cut(s) | 1707 |
| Mva1269I | GAATGC | 1 cut(s) | 1086 |
| MvaI | CCWGG | 2 cut(s) | 428, 884 |
| MvnI | CGCG | 1 cut(s) | 1465 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 53, 514, 1658 |
| NciI | CCSGG | 1 cut(s) | 272 |
| NdeII | GATC | 4 cut(s) | 448, 1546, 1703, 1795 |
| NlaIV | GGNNCC | 2 cut(s) | 270, 531 |
| NmuCI | GTSAC | 3 cut(s) | 104, 704, 1622 |
| NspI | RCATGY | 5 cut(s) | 373, 626, 865, 1169, 1781 |
| NspV | TTCGAA | 1 cut(s) | 912 |
| PaeI | GCATGC | 1 cut(s) | 1781 |
| PasI | CCCWGGG | 1 cut(s) | 427 |
| PciI | ACATGT | 2 cut(s) | 369, 861 |
| PciSI | GCTCTTC | 3 cut(s) | 110, 583, 782 |
| PctI | GAATGC | 1 cut(s) | 1086 |
| PdmI | GAANNNNTTC | 1 cut(s) | 1236 |
| PfeI | GAWTC | 5 cut(s) | 696, 764, 944, 1055, 1333 |
| PinAI | ACCGGT | 1 cut(s) | 545 |
| PkrI | GCNGC | 5 cut(s) | 55, 122, 507, 1544, 1816 |
| PleI | GAGTC | 3 cut(s) | 240, 944, 1838 |
| PpsI | GAGTC | 3 cut(s) | 240, 944, 1838 |
| PscI | ACATGT | 2 cut(s) | 369, 861 |
| PshAI | GACNNNNGTC | 1 cut(s) | 249 |
| PsiI | TTATAA | 1 cut(s) | 537 |
| Psp6I | CCWGG | 2 cut(s) | 426, 882 |
| PspGI | CCWGG | 2 cut(s) | 426, 882 |
| PspN4I | GGNNCC | 2 cut(s) | 270, 531 |
| PspOMI | GGGCCC | 1 cut(s) | 268 |
| PspPI | GGNCC | 6 cut(s) | 244, 268, 269, 430, 530, 880 |
| PsrI | GAACNNNNNNTAC | 2 cut(s) | 1400, 1432 |
| PstNI | CAGNNNCTG | 1 cut(s) | 1014 |
| RsaI | GTAC | 7 cut(s) | 360, 405, 513, 826, 1073, 1291, 1415 |
| RsaNI | GTAC | 7 cut(s) | 359, 404, 512, 825, 1072, 1290, 1414 |
| SapI | GCTCTTC | 3 cut(s) | 110, 583, 782 |
| SaqAI | TTAA | 3 cut(s) | 723, 732, 1448 |
| SatI | GCNGC | 5 cut(s) | 54, 121, 506, 1543, 1815 |
| Sau3AI | GATC | 4 cut(s) | 448, 1546, 1703, 1795 |
| Sau96I | GGNCC | 6 cut(s) | 244, 268, 269, 430, 530, 880 |
| ScaI | AGTACT | 1 cut(s) | 1415 |
| SchI | GAGTC | 3 cut(s) | 241, 944, 1838 |
| ScrFI | CCNGG | 3 cut(s) | 272, 428, 884 |
| SduI | GDGCHC | 1 cut(s) | 272 |
| SexAI | ACCWGGT | 1 cut(s) | 882 |
| SfaNI | GCATC | 3 cut(s) | 423, 604, 1166 |
| SfuI | TTCGAA | 1 cut(s) | 912 |
| SinI | GGWCC | 2 cut(s) | 244, 880 |
| SmlI | CTYRAG | 1 cut(s) | 736 |
| SmoI | CTYRAG | 1 cut(s) | 736 |
| SphI | GCATGC | 1 cut(s) | 1781 |
| SsiI | CCGC | 3 cut(s) | 260, 1163, 1227 |
| SspMI | CTAG | 3 cut(s) | 582, 1046, 1211 |
| StyD4I | CCNGG | 3 cut(s) | 270, 426, 882 |
| StyI | CCWWGG | 2 cut(s) | 126, 939 |
| TaaI | ACNGT | 5 cut(s) | 604, 997, 1016, 1258, 1311 |
| TaiI | ACGT | 3 cut(s) | 111, 617, 911 |
| TaqI | TCGA | 4 cut(s) | 230, 439, 611, 912 |
| TatI | WGTACW | 3 cut(s) | 403, 1289, 1413 |
| TfiI | GAWTC | 5 cut(s) | 696, 764, 944, 1055, 1333 |
| Tru1I | TTAA | 3 cut(s) | 723, 732, 1448 |
| Tru9I | TTAA | 3 cut(s) | 723, 732, 1448 |
| TscAI | CASTG | 7 cut(s) | 270, 350, 462, 1000, 1019, 1147, 1510 |
| TseFI | GTSAC | 3 cut(s) | 104, 704, 1622 |
| TseI | GCWGC | 5 cut(s) | 53, 120, 505, 1542, 1814 |
| Tsp45I | GTSAC | 3 cut(s) | 104, 704, 1622 |
| TspDTI | ATGAA | 7 cut(s) | 408, 651, 758, 774, 1047, 1421, 1689 |
| TspRI | CASTG | 7 cut(s) | 270, 350, 462, 1000, 1019, 1147, 1510 |
| VpaK11BI | GGWCC | 2 cut(s) | 244, 880 |
| XapI | RAATTY | 3 cut(s) | 685, 1383, 1852 |
| XceI | RCATGY | 5 cut(s) | 373, 626, 865, 1169, 1781 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1602 |
| XmiI | GTMKAC | 1 cut(s) | 990 |
| XmnI | GAANNNNTTC | 1 cut(s) | 1236 |
| XspI | CTAG | 3 cut(s) | 582, 1046, 1211 |
| ZrmI | AGTACT | 1 cut(s) | 1415 |