FvH4_2g28030

PHD-finger

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Forward (+)
22119085 .. 22124843
5759 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g28030.t2

Sequence Viewer

Length: 1860 bp
ATGGAGGCTGAAGAAGGGAAAAGCAATGGTGATAGCATGGAGTGTGCTAAGGCAGCTCAATGCTCCAAGATTGAAGCCAATGGTTTTGAAGTTGCGATTGGTAGTGACGTTGCGAAGAGCAGCTCCTTGGGGACAAGTGAGGGTATTCGGACTTACAAGAGGCGTAGGCGTGAGATGTGGAGTTGGGAGAGCAAGTCGCAGGAAGATGGGAGAGCTAATGGGGAATGTTCGAGTCAAATGGTGGACCAGCGTCTAAATCCGCCAGTGGGCCCGGTTATACACAACACCTCTTGCGAGCAAGTCCATCTTCAAATAAACAATTCTGATAATTGCTCAGAGAGGCACTGGAGAAATGCCGTACTGGAACACATGTGTCAGTCAATAAGTGATGATGAAGGTGGTGTACAAGTCTGCATCAGAGAAGCCCTGGGCCATCTTCGAGAGATTGATCACACACTGCATAAGGGATGTGGTGAACATAATGAGGATAGACACAAGAGTTGGCTGCCAGTACGGCCAGTCTGGAAGGGGCCTTATAATGTAACCGGTGGGCAGGAGGATGTTTTATCTAATGGCTCTTCTAGTAAATCAAAGCATCATACAGTCAGTTCGACGTGCCAACATGCTTTTTTCAATATCTTAGTCTCACAGAAGTTTGCTTCATTGTGCAAACTGCTGTTACAAAATTTTCAAGGAATCAAGGGTGACAGCATTTTTGACCTTAAACACATTAACTCAAGGATGAAAAGTGGAGTTTATGAAGATTCACCTTTGCTCTTCTCAAAGGATATGCAACAGGTATGGAGAAAGCTTCAAGGGGTTGGTACAGAATTGATTTCCCTTGCAAAAAGCCTCTCGGACATGTCAAGGACTTGCAAGGACCAGGTTGGAGGTTCAGGCTACAACACGTTCGAAGTTAGTAATAATGAGCTTCAAGCCTTGGAATCTGACTCTCATACTAAACTGGAGCAGACAGGGGATTGTGGTGTATACACTGTATGCACTTGCAGGCACTGTGGAAACAAGGCAAATGGGAGTGATTGTCTAGTATGTGATTCATGTGAGGAGATGTACCATGTATCTTGCATTCAGCCTGTTGTCAAAAACATTCCTACAAAAAGTTGGTATTGTGCAAGTTGCACTGCTTGTGGTATTGCATCACCGCATGTGAATTGTGAAGCGTGTGAAAGGCTGATTGCCAGCAAAAGTCTAGTTGATGGAGTTGGCGGTGAAAATGTTCCTACAAATGAGGAAACAGTCAATGAGTTGGGTGATAACTCAAATTATAGTACAGATGATGGAGTTCAACTGTCTGAAGAGAACGAAGACTTGAATCTTTGCAAAGTTTGTGGAGTTATTGTAGAAAAGGGTGAGATGGTGAAAATTTGTGGTCATCCATTCTGCATGAACAAGTACTACCACATGAGGTGTCTGACGGCAGGGCAGTTAAAGATGTATGGCTCGCGTTGGTATTGCCCTTCTTGTCTATGTAGAGCTTGTCTCACTGACAAAGATGATGATAAGATAGTTCTTTGTGATGGCTGCGATCATGCTTTCCATATCTATTGCTTGAACCCACCACTCTGTTCCATTCCAGAAGGAAAATGGTTTTGCAGAAAATGTGACGCAACAATTCAGATGATACGCAGGGCAAAAAGAGCTTATCAAAATAATGAAAAGCAACAGGGTAAGAAAAGTGAAGGATCAATTGAATGGAATGTAAAAGTTGATGATGGGCAATCTGAACAAAGTAGAGGGGGAATGGATGTGCTTCTGCATGCAGTCAAGACTTTAGATCATCAAAAGGATATGGCTGCGACTGAGATAATGAGAAGTTTTCAGGACTCACAAAATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

620

Amino Acids

68.81

Weight (kDa)

5.87

Isoelectric Point (pI)

54.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD PF00628 259 - 303 9.9e-08 PHD-finger
PHD PF00628 420 - 464 2.6e-11 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 537
AccI GTMKAC 1 cut(s) 990
AccII CGCG 1 cut(s) 1465
AciI CCGC 3 cut(s) 260, 1163, 1227
AclWI GGATC 1 cut(s) 1711
AcoI YGGCCR 1 cut(s) 515
AcsI RAATTY 3 cut(s) 685, 1383, 1852
AcuI CTGAAG 2 cut(s) 30, 1335
AfaI GTAC 7 cut(s) 360, 405, 513, 826, 1073, 1291, 1415
AfiI CCNNNNNNNGG 1 cut(s) 266
AflIII ACRYGT 3 cut(s) 369, 861, 906
AgeI ACCGGT 1 cut(s) 545
AjiI CACGTC 1 cut(s) 615
AjnI CCWGG 2 cut(s) 426, 882
AjuI GAANNNNNNNTTGG 2 cut(s) 81, 113
AluBI AGCT 7 cut(s) 56, 123, 215, 811, 931, 1496, 1661
AluI AGCT 7 cut(s) 56, 123, 215, 811, 931, 1496, 1661
Alw26I GTCTC 2 cut(s) 649, 1505
AlwI GGATC 1 cut(s) 1711
AlwNI CAGNNNCTG 1 cut(s) 1014
AoxI GGCC 4 cut(s) 268, 430, 515, 530
ApaI GGGCCC 1 cut(s) 272
ApeKI GCWGC 5 cut(s) 53, 120, 505, 1542, 1814
ApoI RAATTY 3 cut(s) 685, 1383, 1852
ArsI GACNNNNNNTTYG 2 cut(s) 698, 730
AsiGI ACCGGT 1 cut(s) 545
Asp700I GAANNNNTTC 1 cut(s) 1236
AspS9I GGNCC 6 cut(s) 244, 268, 269, 430, 530, 880
AsuC2I CCSGG 1 cut(s) 272
AsuHPI GGTGA 9 cut(s) 41, 485, 716, 759, 1152, 1241, 1283, 1382, 1390
AsuII TTCGAA 1 cut(s) 912
AvaII GGWCC 2 cut(s) 244, 880
BaeGI GKGCMC 1 cut(s) 272
BanII GRGCYC 1 cut(s) 272
BarI GAAGNNNNNNTAC 2 cut(s) 387, 419
BbsI GAAGAC 1 cut(s) 1332
BbvI GCAGC 5 cut(s) 65, 132, 492, 1529, 1801
BccI CCATC 8 cut(s) 200, 312, 441, 1211, 1292, 1369, 1532, 1727
BceAI ACGGC 3 cut(s) 341, 530, 1452
BciT130I CCWGG 2 cut(s) 428, 884
BclI TGATCA 1 cut(s) 448
BcnI CCSGG 1 cut(s) 272
BcoDI GTCTC 2 cut(s) 649, 1505
BfaI CTAG 3 cut(s) 582, 1046, 1211
BglI GCCNNNNNGGC 1 cut(s) 514
BisI GCNGC 5 cut(s) 54, 121, 506, 1543, 1815
BlsI GCNGC 5 cut(s) 55, 122, 507, 1544, 1816
BmcAI AGTACT 1 cut(s) 1415
Bme1390I CCNGG 3 cut(s) 272, 428, 884
Bme18I GGWCC 2 cut(s) 244, 880
BmgBI CACGTC 1 cut(s) 615
BmgT120I GGNCC 6 cut(s) 244, 268, 269, 430, 530, 880
BmiI GGNNCC 2 cut(s) 270, 531
BmrFI CCNGG 3 cut(s) 272, 428, 884
BmsI GCATC 3 cut(s) 423, 604, 1166
BoxI GACNNNNGTC 1 cut(s) 249
BpiI GAAGAC 1 cut(s) 1332
BplI GAGNNNNNCTC 2 cut(s) 1485, 1517
BpmI CTGGAG 2 cut(s) 367, 986
Bpu10I CCTNAGC 1 cut(s) 48
Bpu14I TTCGAA 1 cut(s) 912
BpuEI CTTGAG 1 cut(s) 721
BpuMI CCSGG 1 cut(s) 272
BsaJI CCNNGG 4 cut(s) 126, 426, 427, 939
BsaWI WCCGGW 1 cut(s) 545
BsaXI ACNNNNNCTCC 6 cut(s) 179, 209, 1027, 1057, 1344, 1374
Bsc4I CCNNNNNNNGG 1 cut(s) 266
Bse118I RCCGGY 1 cut(s) 545
Bse1I ACTGG 6 cut(s) 263, 350, 366, 509, 518, 969
Bse3DI GCAATG 1 cut(s) 31
BseBI CCWGG 2 cut(s) 428, 884
BseDI CCNNGG 4 cut(s) 126, 426, 427, 939
BseGI GGATG 5 cut(s) 473, 565, 747, 1393, 1771
BseLI CCNNNNNNNGG 1 cut(s) 266
BseMI GCAATG 1 cut(s) 31
BseMII CTCAG 2 cut(s) 348, 1812
BseNI ACTGG 6 cut(s) 263, 350, 366, 509, 518, 969
BseRI GAGGAG 1 cut(s) 1079
BseSI GKGCMC 1 cut(s) 272
BseXI GCAGC 5 cut(s) 65, 132, 492, 1529, 1801
Bsh1236I CGCG 1 cut(s) 1465
BshFI GGCC 4 cut(s) 270, 432, 517, 532
BshTI ACCGGT 1 cut(s) 545
BsiSI CCGG 2 cut(s) 272, 546
BslFI GGGAC 1 cut(s) 145
BslI CCNNNNNNNGG 1 cut(s) 266
BsmAI GTCTC 2 cut(s) 649, 1505
BsmFI GGGAC 1 cut(s) 145
BsmI GAATGC 1 cut(s) 1086
BsnI GGCC 4 cut(s) 270, 432, 517, 532
Bsp119I TTCGAA 1 cut(s) 912
Bsp120I GGGCCC 1 cut(s) 268
Bsp1286I GDGCHC 1 cut(s) 272
Bsp1407I TGTACA 1 cut(s) 403
Bsp143I GATC 4 cut(s) 448, 1546, 1703, 1795
BspACI CCGC 3 cut(s) 260, 1163, 1227
BspANI GGCC 4 cut(s) 270, 432, 517, 532
BspCNI CTCAG 2 cut(s) 347, 1813
BspFNI CGCG 1 cut(s) 1465
BspLI GGNNCC 2 cut(s) 270, 531
BspPI GGATC 1 cut(s) 1711
BspQI GCTCTTC 3 cut(s) 110, 583, 782
BspT104I TTCGAA 1 cut(s) 912
BsrDI GCAATG 1 cut(s) 31
BsrFI RCCGGY 1 cut(s) 545
BsrGI TGTACA 1 cut(s) 403
BsrI ACTGG 6 cut(s) 263, 350, 366, 509, 518, 969
BssAI RCCGGY 1 cut(s) 545
BssECI CCNNGG 4 cut(s) 126, 426, 427, 939
BssMI GATC 4 cut(s) 448, 1546, 1703, 1795
BssNAI GTATAC 1 cut(s) 991
BssT1I CCWWGG 2 cut(s) 126, 939
Bst1107I GTATAC 1 cut(s) 991
Bst2UI CCWGG 2 cut(s) 428, 884
Bst4CI ACNGT 5 cut(s) 604, 997, 1016, 1258, 1311
Bst6I CTCTTC 4 cut(s) 110, 583, 782, 1311
BstAUI TGTACA 1 cut(s) 403
BstBI TTCGAA 1 cut(s) 912
BstC8I GCNNGC 5 cut(s) 296, 1010, 1201, 1463, 1779
BstDEI CTNAG 4 cut(s) 48, 334, 640, 1821
BstF5I GGATG 5 cut(s) 473, 565, 747, 1393, 1771
BstFNI CGCG 1 cut(s) 1465
BstKTI GATC 4 cut(s) 451, 1549, 1706, 1798
BstMAI GTCTC 2 cut(s) 649, 1505
BstMBI GATC 4 cut(s) 448, 1546, 1703, 1795
BstMWI GCNNNNNNNGC 3 cut(s) 53, 514, 1658
BstNI CCWGG 2 cut(s) 428, 884
BstNSI RCATGY 5 cut(s) 373, 626, 865, 1169, 1781
BstPAI GACNNNNGTC 1 cut(s) 249
BstSCI CCNGG 3 cut(s) 270, 426, 882
BstSLI GKGCMC 1 cut(s) 272
BstUI CGCG 1 cut(s) 1465
BstV1I GCAGC 5 cut(s) 65, 132, 492, 1529, 1801
BstV2I GAAGAC 1 cut(s) 1332
BstZ17I GTATAC 1 cut(s) 991
BsuRI GGCC 4 cut(s) 270, 432, 517, 532
BtrI CACGTC 1 cut(s) 615
BtsCI GGATG 5 cut(s) 473, 565, 747, 1393, 1771
BtsI GCAGTG 2 cut(s) 455, 1140
BtsIMutI CAGTG 7 cut(s) 270, 343, 455, 993, 1012, 1140, 1503
Cac8I GCNNGC 5 cut(s) 296, 1010, 1201, 1463, 1779
CaiI CAGNNNCTG 1 cut(s) 1014
Cfr10I RCCGGY 1 cut(s) 545
Cfr13I GGNCC 6 cut(s) 244, 268, 269, 430, 530, 880
CseI GACGC 2 cut(s) 239, 1634
CsiI ACCWGGT 1 cut(s) 882
Csp6I GTAC 7 cut(s) 359, 404, 512, 825, 1072, 1290, 1414
CspAI ACCGGT 1 cut(s) 545
CspCI CAANNNNNGTGG 2 cut(s) 1330, 1365
CviQI GTAC 7 cut(s) 359, 404, 512, 825, 1072, 1290, 1414
DdeI CTNAG 4 cut(s) 48, 334, 640, 1821
DpnI GATC 4 cut(s) 450, 1548, 1705, 1797
DpnII GATC 4 cut(s) 448, 1546, 1703, 1795
EaeI YGGCCR 1 cut(s) 515
Eam1104I CTCTTC 4 cut(s) 110, 583, 782, 1311
EarI CTCTTC 4 cut(s) 110, 583, 782, 1311
EciI GGCGGA 1 cut(s) 249
Eco130I CCWWGG 2 cut(s) 126, 939
Eco24I GRGCYC 1 cut(s) 272
Eco47I GGWCC 2 cut(s) 244, 880
Eco57I CTGAAG 2 cut(s) 30, 1335
EcoO109I RGGNCCY 1 cut(s) 530
EcoRII CCWGG 2 cut(s) 426, 882
EcoT14I CCWWGG 2 cut(s) 126, 939
EcoT38I GRGCYC 1 cut(s) 272
ErhI CCWWGG 2 cut(s) 126, 939
FalI AAGNNNNNCTT 2 cut(s) 291, 323
FaqI GGGAC 1 cut(s) 145
FbaI TGATCA 1 cut(s) 448
FblI GTMKAC 1 cut(s) 990
Fnu4HI GCNGC 5 cut(s) 54, 121, 506, 1543, 1815
FokI GGATG 5 cut(s) 480, 572, 754, 1380, 1778
FriOI GRGCYC 1 cut(s) 272
Fsp4HI GCNGC 5 cut(s) 54, 121, 506, 1543, 1815
FspBI CTAG 3 cut(s) 582, 1046, 1211
GluI GCNGC 5 cut(s) 54, 121, 506, 1543, 1815
GsuI CTGGAG 2 cut(s) 367, 986
HaeIII GGCC 4 cut(s) 270, 432, 517, 532
HapII CCGG 2 cut(s) 272, 546
HgaI GACGC 2 cut(s) 239, 1634
HindIII AAGCTT 1 cut(s) 809
HinfI GANTC 8 cut(s) 232, 696, 764, 944, 950, 1055, 1333, 1844
HpaII CCGG 2 cut(s) 272, 546
HphI GGTGA 9 cut(s) 41, 485, 716, 759, 1152, 1241, 1283, 1382, 1390
Hpy166II GTNNAC 4 cut(s) 244, 404, 476, 991
Hpy188III TCNNGA 5 cut(s) 440, 523, 1595, 1786, 1841
Hpy8I GTNNAC 4 cut(s) 244, 404, 476, 991
Hpy99I CGWCG 1 cut(s) 616
HpyAV CCTTC 6 cut(s) 8, 389, 520, 1488, 1592, 1694
HpyCH4III ACNGT 5 cut(s) 604, 997, 1016, 1258, 1311
HpyCH4IV ACGT 3 cut(s) 108, 614, 908
HpyF10VI GCNNNNNNNGC 3 cut(s) 53, 514, 1658
HpyF3I CTNAG 4 cut(s) 48, 334, 640, 1821
HpySE526I ACGT 3 cut(s) 108, 614, 908
Ksp22I TGATCA 1 cut(s) 448
Kzo9I GATC 4 cut(s) 448, 1546, 1703, 1795
LguI GCTCTTC 3 cut(s) 110, 583, 782
LmnI GCTCC 3 cut(s) 68, 128, 967
Lsp1109I GCAGC 5 cut(s) 65, 132, 492, 1529, 1801
LweI GCATC 3 cut(s) 423, 604, 1166
MabI ACCWGGT 1 cut(s) 882
MaeI CTAG 3 cut(s) 582, 1046, 1211
MaeII ACGT 3 cut(s) 108, 614, 908
MaeIII GTNAC 5 cut(s) 104, 541, 678, 704, 1622
MalI GATC 4 cut(s) 450, 1548, 1705, 1797
MboI GATC 4 cut(s) 448, 1546, 1703, 1795
MfeI CAATTG 1 cut(s) 1707
MhlI GDGCHC 1 cut(s) 272
MlyI GAGTC 3 cut(s) 241, 944, 1838
MmeI TCCRAC 1 cut(s) 868
MroXI GAANNNNTTC 1 cut(s) 1236
MseI TTAA 3 cut(s) 723, 732, 1448
MspI CCGG 2 cut(s) 272, 546
MspR9I CCNGG 3 cut(s) 272, 428, 884
MunI CAATTG 1 cut(s) 1707
Mva1269I GAATGC 1 cut(s) 1086
MvaI CCWGG 2 cut(s) 428, 884
MvnI CGCG 1 cut(s) 1465
MwoI GCNNNNNNNGC 3 cut(s) 53, 514, 1658
NciI CCSGG 1 cut(s) 272
NdeII GATC 4 cut(s) 448, 1546, 1703, 1795
NlaIV GGNNCC 2 cut(s) 270, 531
NmuCI GTSAC 3 cut(s) 104, 704, 1622
NspI RCATGY 5 cut(s) 373, 626, 865, 1169, 1781
NspV TTCGAA 1 cut(s) 912
PaeI GCATGC 1 cut(s) 1781
PasI CCCWGGG 1 cut(s) 427
PciI ACATGT 2 cut(s) 369, 861
PciSI GCTCTTC 3 cut(s) 110, 583, 782
PctI GAATGC 1 cut(s) 1086
PdmI GAANNNNTTC 1 cut(s) 1236
PfeI GAWTC 5 cut(s) 696, 764, 944, 1055, 1333
PinAI ACCGGT 1 cut(s) 545
PkrI GCNGC 5 cut(s) 55, 122, 507, 1544, 1816
PleI GAGTC 3 cut(s) 240, 944, 1838
PpsI GAGTC 3 cut(s) 240, 944, 1838
PscI ACATGT 2 cut(s) 369, 861
PshAI GACNNNNGTC 1 cut(s) 249
PsiI TTATAA 1 cut(s) 537
Psp6I CCWGG 2 cut(s) 426, 882
PspGI CCWGG 2 cut(s) 426, 882
PspN4I GGNNCC 2 cut(s) 270, 531
PspOMI GGGCCC 1 cut(s) 268
PspPI GGNCC 6 cut(s) 244, 268, 269, 430, 530, 880
PsrI GAACNNNNNNTAC 2 cut(s) 1400, 1432
PstNI CAGNNNCTG 1 cut(s) 1014
RsaI GTAC 7 cut(s) 360, 405, 513, 826, 1073, 1291, 1415
RsaNI GTAC 7 cut(s) 359, 404, 512, 825, 1072, 1290, 1414
SapI GCTCTTC 3 cut(s) 110, 583, 782
SaqAI TTAA 3 cut(s) 723, 732, 1448
SatI GCNGC 5 cut(s) 54, 121, 506, 1543, 1815
Sau3AI GATC 4 cut(s) 448, 1546, 1703, 1795
Sau96I GGNCC 6 cut(s) 244, 268, 269, 430, 530, 880
ScaI AGTACT 1 cut(s) 1415
SchI GAGTC 3 cut(s) 241, 944, 1838
ScrFI CCNGG 3 cut(s) 272, 428, 884
SduI GDGCHC 1 cut(s) 272
SexAI ACCWGGT 1 cut(s) 882
SfaNI GCATC 3 cut(s) 423, 604, 1166
SfuI TTCGAA 1 cut(s) 912
SinI GGWCC 2 cut(s) 244, 880
SmlI CTYRAG 1 cut(s) 736
SmoI CTYRAG 1 cut(s) 736
SphI GCATGC 1 cut(s) 1781
SsiI CCGC 3 cut(s) 260, 1163, 1227
SspMI CTAG 3 cut(s) 582, 1046, 1211
StyD4I CCNGG 3 cut(s) 270, 426, 882
StyI CCWWGG 2 cut(s) 126, 939
TaaI ACNGT 5 cut(s) 604, 997, 1016, 1258, 1311
TaiI ACGT 3 cut(s) 111, 617, 911
TaqI TCGA 4 cut(s) 230, 439, 611, 912
TatI WGTACW 3 cut(s) 403, 1289, 1413
TfiI GAWTC 5 cut(s) 696, 764, 944, 1055, 1333
Tru1I TTAA 3 cut(s) 723, 732, 1448
Tru9I TTAA 3 cut(s) 723, 732, 1448
TscAI CASTG 7 cut(s) 270, 350, 462, 1000, 1019, 1147, 1510
TseFI GTSAC 3 cut(s) 104, 704, 1622
TseI GCWGC 5 cut(s) 53, 120, 505, 1542, 1814
Tsp45I GTSAC 3 cut(s) 104, 704, 1622
TspDTI ATGAA 7 cut(s) 408, 651, 758, 774, 1047, 1421, 1689
TspRI CASTG 7 cut(s) 270, 350, 462, 1000, 1019, 1147, 1510
VpaK11BI GGWCC 2 cut(s) 244, 880
XapI RAATTY 3 cut(s) 685, 1383, 1852
XceI RCATGY 5 cut(s) 373, 626, 865, 1169, 1781
XcmI CCANNNNNNNNNTGG 1 cut(s) 1602
XmiI GTMKAC 1 cut(s) 990
XmnI GAANNNNTTC 1 cut(s) 1236
XspI CTAG 3 cut(s) 582, 1046, 1211
ZrmI AGTACT 1 cut(s) 1415
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.