Rmu_sc0007272.1_g000001

PHD-finger

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007272.1
Physical Location & Seq
Forward (+)
674 .. 5128
4455 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007272.1_g000001.1.cds

Sequence Viewer

Length: 1857 bp
atggaatttgaagaaggaaaaagcaatggtgatagcatggagttcactagggcggctcaatgctccaagaatgaagccaatggttttgaatttgcgatatgtaatgatgttgccaagagcagctcctcaggggcaagtgagggtattcggacttacaagaggcggaggcgtgagaggtggagttgggacagcaaatcacaggaagatgggagagctaatggggaatcttggagtcaaatggtggaccagcgtctaaagcaaccggtgggcccggttatacacaacacctcttctgagcaagtccatcttcgaataaatagttctgatgattgctcagggagacagtggagaaatgccgtactggagcacatgtgtcagtcaataagtgatgatgaaggtggtgtacaggtgtgcatcagagaagccctcggccatcttcgacagattgatcatacagtgcctaaggaatttggtgaagataatgaagatcggcacaagtgttttctgccagtacggtcagtctggaatggacctcataatgtagccagtgggcaggaggatgttatatctaatggctcttcaagtaaatcaaagcatcatacagtcacttcgacgtgccaacatgcttttttcaatatcttagtctcagagaagtttgctttattgtgcaagctgctgttacaaaattttcaaggaatcaaggctgacagcatttttgaccttaaacacataaactcaaggatgaaaagtggagtttatgaagattcaccgttgctcttctcaaaggatatgcaacaggtatggagaaagcttcaaggggttggtacggaattgatttcccttgcaaaaagcctctcggacatgtcaaggagttgcaaggaccaggtcggaggttcaggctacagcacatttgaagttgggaaaaatgagttccacaccttggaatctgactcttatcctaaactggagcagacagaggattgtggtgtatacacagtatacacttgcaggcactgtggagacaaggcaaatgggagtgattgtctagtatgtgattcatgtgaggagatgtaccatgtatcttgcattcagcctgctgtcaaaggcattcctacaaaaagttggtattgtgcaagttgcactgcttgtggtattgcatcaccgcatgagaattgtgaagtgtgtgaaaggctgattgccagcaaaagtctagttgatggagttggcggtgaaaatgttcctacaaatgaggaaacagtcgagttgggagataactcaaattatagtacagacgatggaattcaactatctgaagataatggcgacttgaacctttgcaaagtttgtggagttgtggtagtaaagggtgagacggtgaaaatatgtggtcatccatactgcatgaacaagtactaccatgtgaggtgtctgacggcagggcagttgaagctgtatggtccacgttggtactgcccttcttgtctatgcagagcttgtctcaccgataaagatgatgataagattgttctttgtgatggctgcgatcatgcgtaccatatctattgcttgaacccaccactctgttccattccaaaaggaaaatggttttgcagaaaatgtgatgcaacaattcagatgatacgcagagcaaaaagggcttatcaaaaaaatgaaaagcaacaggataagaaaagtgaaggatcaattaagtggaatgaaaaagttgatgatggagaatcagaacaaggtagggggggaatggatgtgcttctgcatgcagtcaagactctagatcatgaaaagaaaatggctgctactgagataatgagaaactttcaggacagacagaatttgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

618

Amino Acids

69.18

Weight (kDa)

6.05

Isoelectric Point (pI)

48.05

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 940
AccI GTMKAC 2 cut(s) 990, 999
AciI CCGC 4 cut(s) 53, 163, 1163, 1227
AclWI GGATC 1 cut(s) 1708
AcoI YGGCCR 1 cut(s) 430
AcsI RAATTY 6 cut(s) 5, 89, 467, 685, 1299, 1849
AcuI CTGAAG 1 cut(s) 1332
AfaI GTAC 9 cut(s) 360, 405, 513, 826, 1073, 1288, 1412, 1469, 1553
AfiI CCNNNNNNNGG 1 cut(s) 940
AflIII ACRYGT 2 cut(s) 369, 861
AgeI ACCGGT 1 cut(s) 262
AjiI CACGTC 1 cut(s) 615
AjnI CCWGG 1 cut(s) 882
AluBI AGCT 6 cut(s) 123, 215, 673, 811, 1450, 1493
AluI AGCT 6 cut(s) 123, 215, 673, 811, 1450, 1493
Alw21I GWGCWC 1 cut(s) 369
Alw26I GTCTC 5 cut(s) 334, 649, 1014, 1364, 1502
AlwI GGATC 1 cut(s) 1708
AlwNI CAGNNNCTG 1 cut(s) 1014
AoxI GGCC 2 cut(s) 268, 430
ApaI GGGCCC 1 cut(s) 272
ApeKI GCWGC 4 cut(s) 120, 673, 1539, 1811
ApoI RAATTY 6 cut(s) 5, 89, 467, 685, 1299, 1849
ArsI GACNNNNNNTTYG 2 cut(s) 698, 730
AsiGI ACCGGT 1 cut(s) 262
Asp700I GAANNNNTTC 1 cut(s) 1236
AspS9I GGNCC 6 cut(s) 244, 268, 269, 530, 880, 1457
AsuC2I CCSGG 1 cut(s) 272
AsuHPI GGTGA 8 cut(s) 41, 485, 759, 1152, 1241, 1379, 1387, 1492
AsuII TTCGAA 1 cut(s) 310
AvaII GGWCC 4 cut(s) 244, 530, 880, 1457
AxyI CCTNAGG 2 cut(s) 127, 462
BaeGI GKGCMC 1 cut(s) 272
BanII GRGCYC 1 cut(s) 272
BarI GAAGNNNNNNTAC 2 cut(s) 387, 419
Bbv12I GWGCWC 1 cut(s) 369
BbvI GCAGC 4 cut(s) 132, 660, 1526, 1798
BccI CCATC 7 cut(s) 200, 312, 441, 1211, 1289, 1529, 1724
BceAI ACGGC 2 cut(s) 341, 1449
BciT130I CCWGG 1 cut(s) 884
BclI TGATCA 1 cut(s) 448
BcnI CCSGG 1 cut(s) 272
BcoDI GTCTC 5 cut(s) 334, 649, 1014, 1364, 1502
BfaI CTAG 4 cut(s) 48, 1046, 1211, 1790
BfmI CTRYAG 1 cut(s) 901
BisI GCNGC 5 cut(s) 54, 121, 674, 1540, 1812
BlsI GCNGC 5 cut(s) 55, 122, 675, 1541, 1813
BmcAI AGTACT 1 cut(s) 1412
Bme1390I CCNGG 2 cut(s) 272, 884
Bme18I GGWCC 4 cut(s) 244, 530, 880, 1457
BmgBI CACGTC 1 cut(s) 615
BmgT120I GGNCC 6 cut(s) 244, 268, 269, 530, 880, 1457
BmiI GGNNCC 1 cut(s) 270
BmrFI CCNGG 2 cut(s) 272, 884
BmsI GCATC 4 cut(s) 423, 604, 1166, 1612
BoxI GACNNNNGTC 1 cut(s) 249
BplI GAGNNNNNCTC 4 cut(s) 411, 443, 1482, 1514
BpmI CTGGAG 2 cut(s) 383, 986
Bpu10I CCTNAGC 1 cut(s) 334
Bpu14I TTCGAA 1 cut(s) 310
BpuEI CTTGAG 1 cut(s) 721
BpuMI CCSGG 1 cut(s) 272
BsaJI CCNNGG 2 cut(s) 427, 939
BsaWI WCCGGW 1 cut(s) 262
BsaXI ACNNNNNCTCC 6 cut(s) 356, 386, 1027, 1057, 1341, 1371
Bsc4I CCNNNNNNNGG 1 cut(s) 940
Bse118I RCCGGY 1 cut(s) 262
Bse1I ACTGG 4 cut(s) 366, 509, 546, 969
Bse21I CCTNAGG 2 cut(s) 127, 462
Bse3DI GCAATG 1 cut(s) 31
BseBI CCWGG 1 cut(s) 884
BseDI CCNNGG 2 cut(s) 427, 939
BseGI GGATG 4 cut(s) 565, 747, 1390, 1768
BseLI CCNNNNNNNGG 1 cut(s) 940
BseMI GCAATG 1 cut(s) 31
BseMII CTCAG 5 cut(s) 141, 285, 348, 660, 1809
BseNI ACTGG 4 cut(s) 366, 509, 546, 969
BseRI GAGGAG 2 cut(s) 115, 1079
BseSI GKGCMC 1 cut(s) 272
BseXI GCAGC 4 cut(s) 132, 660, 1526, 1798
BshFI GGCC 2 cut(s) 270, 432
BshTI ACCGGT 1 cut(s) 262
BsiHKAI GWGCWC 1 cut(s) 369
BsiSI CCGG 2 cut(s) 263, 272
BslFI GGGAC 1 cut(s) 200
BslI CCNNNNNNNGG 1 cut(s) 940
BsmAI GTCTC 5 cut(s) 334, 649, 1014, 1364, 1502
BsmBI CGTCTC 1 cut(s) 1364
BsmFI GGGAC 1 cut(s) 200
BsmI GAATGC 2 cut(s) 1086, 1107
BsnI GGCC 2 cut(s) 270, 432
Bsp119I TTCGAA 1 cut(s) 310
Bsp120I GGGCCC 1 cut(s) 268
Bsp1286I GDGCHC 2 cut(s) 272, 369
Bsp1407I TGTACA 1 cut(s) 403
Bsp143I GATC 5 cut(s) 448, 487, 1543, 1700, 1792
BspACI CCGC 4 cut(s) 53, 163, 1163, 1227
BspANI GGCC 2 cut(s) 270, 432
BspCNI CTCAG 5 cut(s) 140, 286, 347, 659, 1810
BspHI TCATGA 1 cut(s) 1795
BspLI GGNNCC 1 cut(s) 270
BspPI GGATC 1 cut(s) 1708
BspQI GCTCTTC 2 cut(s) 583, 782
BspT104I TTCGAA 1 cut(s) 310
BsrDI GCAATG 1 cut(s) 31
BsrFI RCCGGY 1 cut(s) 262
BsrGI TGTACA 1 cut(s) 403
BsrI ACTGG 4 cut(s) 366, 509, 546, 969
BssAI RCCGGY 1 cut(s) 262
BssECI CCNNGG 2 cut(s) 427, 939
BssMI GATC 5 cut(s) 448, 487, 1543, 1700, 1792
BssNAI GTATAC 2 cut(s) 991, 1000
BssT1I CCWWGG 1 cut(s) 939
Bst1107I GTATAC 2 cut(s) 991, 1000
Bst2UI CCWGG 1 cut(s) 884
Bst4CI ACNGT 9 cut(s) 345, 457, 516, 604, 771, 997, 1016, 1258, 1375
Bst6I CTCTTC 3 cut(s) 295, 583, 782
BstAUI TGTACA 1 cut(s) 403
BstBI TTCGAA 1 cut(s) 310
BstC8I GCNNGC 5 cut(s) 671, 1010, 1095, 1201, 1776
BstDEI CTNAG 7 cut(s) 127, 294, 334, 462, 640, 646, 1818
BstF5I GGATG 4 cut(s) 565, 747, 1390, 1768
BstKTI GATC 5 cut(s) 451, 490, 1546, 1703, 1795
BstMAI GTCTC 5 cut(s) 334, 649, 1014, 1364, 1502
BstMBI GATC 5 cut(s) 448, 487, 1543, 1700, 1792
BstMWI GCNNNNNNNGC 3 cut(s) 256, 1447, 1655
BstNI CCWGG 1 cut(s) 884
BstNSI RCATGY 4 cut(s) 373, 626, 865, 1778
BstPAI GACNNNNGTC 1 cut(s) 249
BstSCI CCNGG 2 cut(s) 270, 882
BstSFI CTRYAG 1 cut(s) 901
BstSLI GKGCMC 1 cut(s) 272
BstV1I GCAGC 4 cut(s) 132, 660, 1526, 1798
BstZ17I GTATAC 2 cut(s) 991, 1000
Bsu36I CCTNAGG 2 cut(s) 127, 462
BsuRI GGCC 2 cut(s) 270, 432
BtrI CACGTC 1 cut(s) 615
BtsCI GGATG 4 cut(s) 565, 747, 1390, 1768
BtsI GCAGTG 1 cut(s) 1140
BtsIMutI CAGTG 5 cut(s) 350, 462, 553, 1012, 1140
Cac8I GCNNGC 5 cut(s) 671, 1010, 1095, 1201, 1776
CaiI CAGNNNCTG 1 cut(s) 1014
CciI TCATGA 1 cut(s) 1795
Cfr10I RCCGGY 1 cut(s) 262
Cfr13I GGNCC 6 cut(s) 244, 268, 269, 530, 880, 1457
CseI GACGC 1 cut(s) 239
CsiI ACCWGGT 1 cut(s) 882
Csp6I GTAC 9 cut(s) 359, 404, 512, 825, 1072, 1287, 1411, 1468, 1552
CspAI ACCGGT 1 cut(s) 262
CspCI CAANNNNNGTGG 2 cut(s) 1327, 1362
CviQI GTAC 9 cut(s) 359, 404, 512, 825, 1072, 1287, 1411, 1468, 1552
DdeI CTNAG 7 cut(s) 127, 294, 334, 462, 640, 646, 1818
DpnI GATC 5 cut(s) 450, 489, 1545, 1702, 1794
DpnII GATC 5 cut(s) 448, 487, 1543, 1700, 1792
EaeI YGGCCR 1 cut(s) 430
Eam1104I CTCTTC 3 cut(s) 295, 583, 782
EarI CTCTTC 3 cut(s) 295, 583, 782
EciI GGCGGA 1 cut(s) 178
Eco130I CCWWGG 1 cut(s) 939
Eco24I GRGCYC 1 cut(s) 272
Eco47I GGWCC 4 cut(s) 244, 530, 880, 1457
Eco57I CTGAAG 1 cut(s) 1332
Eco81I CCTNAGG 2 cut(s) 127, 462
EcoRI GAATTC 1 cut(s) 1299
EcoRII CCWGG 1 cut(s) 882
EcoT14I CCWWGG 1 cut(s) 939
EcoT38I GRGCYC 1 cut(s) 272
ErhI CCWWGG 1 cut(s) 939
Esp3I CGTCTC 1 cut(s) 1364
FalI AAGNNNNNCTT 2 cut(s) 291, 323
FaqI GGGAC 1 cut(s) 200
FbaI TGATCA 1 cut(s) 448
FblI GTMKAC 2 cut(s) 990, 999
Fnu4HI GCNGC 5 cut(s) 54, 121, 674, 1540, 1812
FokI GGATG 4 cut(s) 572, 754, 1377, 1775
FriOI GRGCYC 1 cut(s) 272
Fsp4HI GCNGC 5 cut(s) 54, 121, 674, 1540, 1812
FspBI CTAG 4 cut(s) 48, 1046, 1211, 1790
GluI GCNGC 5 cut(s) 54, 121, 674, 1540, 1812
GsuI CTGGAG 2 cut(s) 383, 986
HaeIII GGCC 2 cut(s) 270, 432
HapII CCGG 2 cut(s) 263, 272
HgaI GACGC 1 cut(s) 239
HindIII AAGCTT 1 cut(s) 809
HinfI GANTC 9 cut(s) 224, 232, 696, 764, 944, 950, 1055, 1736, 1786
HpaII CCGG 2 cut(s) 263, 272
HphI GGTGA 8 cut(s) 41, 485, 759, 1152, 1241, 1379, 1387, 1492
Hpy166II GTNNAC 6 cut(s) 45, 244, 404, 991, 1000, 1460
Hpy188III TCNNGA 5 cut(s) 523, 1783, 1790, 1796, 1838
Hpy8I GTNNAC 6 cut(s) 45, 244, 404, 991, 1000, 1460
Hpy99I CGWCG 1 cut(s) 616
HpyAV CCTTC 4 cut(s) 8, 389, 1485, 1691
HpyCH4III ACNGT 9 cut(s) 345, 457, 516, 604, 771, 997, 1016, 1258, 1375
HpyCH4IV ACGT 2 cut(s) 614, 1462
HpyF10VI GCNNNNNNNGC 3 cut(s) 256, 1447, 1655
HpyF3I CTNAG 7 cut(s) 127, 294, 334, 462, 640, 646, 1818
HpySE526I ACGT 2 cut(s) 614, 1462
Ksp22I TGATCA 1 cut(s) 448
Kzo9I GATC 5 cut(s) 448, 487, 1543, 1700, 1792
LguI GCTCTTC 2 cut(s) 583, 782
LmnI GCTCC 4 cut(s) 68, 128, 364, 967
Lsp1109I GCAGC 4 cut(s) 132, 660, 1526, 1798
LweI GCATC 4 cut(s) 423, 604, 1166, 1612
MabI ACCWGGT 1 cut(s) 882
MaeI CTAG 4 cut(s) 48, 1046, 1211, 1790
MaeII ACGT 2 cut(s) 614, 1462
MaeIII GTNAC 2 cut(s) 604, 678
MalI GATC 5 cut(s) 450, 489, 1545, 1702, 1794
MboI GATC 5 cut(s) 448, 487, 1543, 1700, 1792
MhlI GDGCHC 2 cut(s) 272, 369
MlyI GAGTC 3 cut(s) 241, 944, 1780
MmeI TCCRAC 1 cut(s) 868
MroXI GAANNNNTTC 1 cut(s) 1236
MseI TTAA 2 cut(s) 723, 1707
MspI CCGG 2 cut(s) 263, 272
MspR9I CCNGG 2 cut(s) 272, 884
Mva1269I GAATGC 2 cut(s) 1086, 1107
MvaI CCWGG 1 cut(s) 884
MwoI GCNNNNNNNGC 3 cut(s) 256, 1447, 1655
NciI CCSGG 1 cut(s) 272
NdeII GATC 5 cut(s) 448, 487, 1543, 1700, 1792
NlaIV GGNNCC 1 cut(s) 270
NmeAIII GCCGAG 1 cut(s) 408
NmuCI GTSAC 1 cut(s) 604
NspI RCATGY 4 cut(s) 373, 626, 865, 1778
NspV TTCGAA 1 cut(s) 310
PaeI GCATGC 1 cut(s) 1778
PagI TCATGA 1 cut(s) 1795
PciI ACATGT 2 cut(s) 369, 861
PciSI GCTCTTC 2 cut(s) 583, 782
PctI GAATGC 2 cut(s) 1086, 1107
PdmI GAANNNNTTC 1 cut(s) 1236
PfeI GAWTC 6 cut(s) 224, 696, 764, 944, 1055, 1736
PflFI GACNNNGTC 1 cut(s) 884
PflMI CCANNNNNTGG 1 cut(s) 940
PinAI ACCGGT 1 cut(s) 262
PkrI GCNGC 5 cut(s) 55, 122, 675, 1541, 1813
PleI GAGTC 3 cut(s) 240, 944, 1780
PpsI GAGTC 3 cut(s) 240, 944, 1780
PscI ACATGT 2 cut(s) 369, 861
PshAI GACNNNNGTC 1 cut(s) 249
Psp6I CCWGG 1 cut(s) 882
PspGI CCWGG 1 cut(s) 882
PspN4I GGNNCC 1 cut(s) 270
PspOMI GGGCCC 1 cut(s) 268
PspPI GGNCC 6 cut(s) 244, 268, 269, 530, 880, 1457
PsrI GAACNNNNNNTAC 2 cut(s) 1397, 1429
PstNI CAGNNNCTG 1 cut(s) 1014
PsyI GACNNNGTC 1 cut(s) 884
RsaI GTAC 9 cut(s) 360, 405, 513, 826, 1073, 1288, 1412, 1469, 1553
RsaNI GTAC 9 cut(s) 359, 404, 512, 825, 1072, 1287, 1411, 1468, 1552
SapI GCTCTTC 2 cut(s) 583, 782
SaqAI TTAA 2 cut(s) 723, 1707
SatI GCNGC 5 cut(s) 54, 121, 674, 1540, 1812
Sau3AI GATC 5 cut(s) 448, 487, 1543, 1700, 1792
Sau96I GGNCC 6 cut(s) 244, 268, 269, 530, 880, 1457
ScaI AGTACT 1 cut(s) 1412
SchI GAGTC 3 cut(s) 241, 944, 1780
ScrFI CCNGG 2 cut(s) 272, 884
SduI GDGCHC 2 cut(s) 272, 369
SexAI ACCWGGT 1 cut(s) 882
SfaNI GCATC 4 cut(s) 423, 604, 1166, 1612
SfcI CTRYAG 1 cut(s) 901
SfuI TTCGAA 1 cut(s) 310
SinI GGWCC 4 cut(s) 244, 530, 880, 1457
SmlI CTYRAG 1 cut(s) 736
SmoI CTYRAG 1 cut(s) 736
SphI GCATGC 1 cut(s) 1778
SsiI CCGC 4 cut(s) 53, 163, 1163, 1227
SspMI CTAG 4 cut(s) 48, 1046, 1211, 1790
StyD4I CCNGG 2 cut(s) 270, 882
StyI CCWWGG 1 cut(s) 939
TaaI ACNGT 9 cut(s) 345, 457, 516, 604, 771, 997, 1016, 1258, 1375
TaiI ACGT 2 cut(s) 617, 1465
TaqI TCGA 4 cut(s) 310, 439, 611, 1260
TatI WGTACW 3 cut(s) 403, 1286, 1410
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 6 cut(s) 224, 696, 764, 944, 1055, 1736
Tru1I TTAA 2 cut(s) 723, 1707
Tru9I TTAA 2 cut(s) 723, 1707
TscAI CASTG 5 cut(s) 350, 462, 553, 1019, 1147
TseFI GTSAC 1 cut(s) 604
TseI GCWGC 4 cut(s) 120, 673, 1539, 1811
Tsp45I GTSAC 1 cut(s) 604
TspGWI ACGGA 1 cut(s) 842
TspRI CASTG 5 cut(s) 350, 462, 553, 1019, 1147
Tth111I GACNNNGTC 1 cut(s) 884
Van91I CCANNNNNTGG 1 cut(s) 940
VpaK11BI GGWCC 4 cut(s) 244, 530, 880, 1457
XapI RAATTY 6 cut(s) 5, 89, 467, 685, 1299, 1849
XbaI TCTAGA 1 cut(s) 1789
XceI RCATGY 4 cut(s) 373, 626, 865, 1778
XcmI CCANNNNNNNNNTGG 1 cut(s) 1599
XmiI GTMKAC 2 cut(s) 990, 999
XmnI GAANNNNTTC 1 cut(s) 1236
XspI CTAG 4 cut(s) 48, 1046, 1211, 1790
ZrmI AGTACT 1 cut(s) 1412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.