Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0006788

Physical Location & Seq

Genomic Coordinates Reverse (-)

11436364 .. 11441952

Gene Structure 5589 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00171040.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 807 bp

ATGGAATTTGAAGAAGGAAAAAGCAATGGTGATAGCATGGAGTTCACTAGGGCGGCTCAATGCTCCAAGAATGAAGCCAATGGTTTTGAATTTGCGATATGTAATGATGTTGCCAAGAGCAGCACTTCAGGGGCAAGTGAGGGTATTCGGACTTACAAGAGGCGGAGGCGTGAGAGGTGGAGTTGGGACAGCAAATCACAGGAAGATGGGAGAGCTAATGGGGAATCTTGGAGTCAAATGGTGGACCAGCGTCTAAAGCAACCGGTGGGCCCGGTTATACACAACACCTCTTCTGAGCAAGTCCACCTTCGAATAAATAGTTCTGATGATTTCTCAGAGAGACACTGGAGAAATGCCGTACTGGAGCACATGTGTCAGTCAATAAGTGATGATGAAGGTGGTGTACAGGTGTGCATCAGAGAAGCCCTGGGCCATCTTCGACAGATTGATCATACACTGCCTAAGGAATTTGGTGAACATAATGAGGATCGGCACAAGTGTTTTCTGCCAGTACGGTCAGTCTGGAATGGACCTCATAATGTAGCCAGTGGGCAGGAGGATGTTATATCTAATGGCTCTTCAAGTAAATCAAAGCATCATTCAGTCACTTCGACATGCCAACATGCTTTTTTCAATATCTTAGTCTCAGAGAAGTTTGCTTTATTGTGCAAACTGCTGTTACAAAATTTTCAAGGAATCAAGGCTGATAGCATTTTTGACCTTAAACACATAAACTCAAGGATGAAAAGTGGAGTTTATGAAGATTCACCGTTGCTCTTCTCAAAGGATATGCAACAGGCAAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PHD

Protein Analysis

268

Amino Acids

30.33

Weight (kDa)

6.35

Isoelectric Point (pI)

51.61

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77250
fragaria_vesca	FvH4_2g28030 FvH4_2g28030
malus_domestica	MD08G1160700.v1.1 MD15G1132400.v1.1
prunus_persica	Prupe.1G487600_v2.0.a1 Prupe.1G487600_v2.0.a1 Prupe.1G487600_v2.0.a1 Prupe.1G487600_v2.0.a1 Prupe.1G487600_v2.0.a1 Prupe.1G487600_v2.0.a1
pyrus_communis	pycom08g13450 pycom15g11950
rosa_chinensis	RchiOBHm_Chr6g0296911
rosa_laevigata	RLG00000011647
rosa_multiflora	Rmu_co8128438.1_g000001 Rmu_sc0007272.1_g000001 Rmu_sc0018303.1_g000003
rosa_roxburghii	Rroxscaffold_7G00171040
rosa_rugosa	Rorug06G0267500 Rorug06G0267600
rosa_samantha	Rh6AG378200 Rh6BG386200 Rh6CG391600 Rh6DG378900
rosa_wichuraiana	Rw6G033060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	53, 163
AclWI	GGATC	1 cut(s)	495
AcsI	RAATTY	4 cut(s)	5, 89, 467, 685
AcuI	CTGAAG	1 cut(s)	111
AfaI	GTAC	3 cut(s)	360, 405, 513
AflIII	ACRYGT	1 cut(s)	369
AgeI	ACCGGT	1 cut(s)	262
AgsI	TTSAA	5 cut(s)	11, 89, 582, 634, 692
AjnI	CCWGG	1 cut(s)	426
AluBI	AGCT	1 cut(s)	215
AluI	AGCT	1 cut(s)	215
Alw21I	GWGCWC	1 cut(s)	369
Alw26I	GTCTC	2 cut(s)	334, 649
AlwI	GGATC	1 cut(s)	495
AoxI	GGCC	2 cut(s)	268, 430
ApaI	GGGCCC	1 cut(s)	272
ApeKI	GCWGC	1 cut(s)	120
ApoI	RAATTY	4 cut(s)	5, 89, 467, 685
AsiGI	ACCGGT	1 cut(s)	262
AspS9I	GGNCC	5 cut(s)	244, 268, 269, 430, 530
AsuC2I	CCSGG	1 cut(s)	272
AsuHPI	GGTGA	3 cut(s)	41, 485, 759
AsuII	TTCGAA	1 cut(s)	310
AvaII	GGWCC	2 cut(s)	244, 530
AxyI	CCTNAGG	1 cut(s)	462
BaeGI	GKGCMC	1 cut(s)	272
BanII	GRGCYC	1 cut(s)	272
BarI	GAAGNNNNNNTAC	2 cut(s)	387, 419
Bbv12I	GWGCWC	1 cut(s)	369
BbvI	GCAGC	1 cut(s)	132
BccI	CCATC	2 cut(s)	200, 441
BceAI	ACGGC	1 cut(s)	341
BciT130I	CCWGG	1 cut(s)	428
BclI	TGATCA	1 cut(s)	448
BcnI	CCSGG	1 cut(s)	272
BcoDI	GTCTC	2 cut(s)	334, 649
BfaI	CTAG	1 cut(s)	48
BisI	GCNGC	2 cut(s)	54, 121
BlsI	GCNGC	2 cut(s)	55, 122
Bme1390I	CCNGG	2 cut(s)	272, 428
Bme18I	GGWCC	2 cut(s)	244, 530
BmgT120I	GGNCC	5 cut(s)	244, 268, 269, 430, 530
BmiI	GGNNCC	1 cut(s)	270
BmrFI	CCNGG	2 cut(s)	272, 428
BmsI	GCATC	2 cut(s)	423, 604
BoxI	GACNNNNGTC	1 cut(s)	249
BpmI	CTGGAG	2 cut(s)	367, 383
Bpu14I	TTCGAA	1 cut(s)	310
BpuEI	CTTGAG	1 cut(s)	721
BpuMI	CCSGG	1 cut(s)	272
BsaJI	CCNNGG	2 cut(s)	426, 427
BsaWI	WCCGGW	1 cut(s)	262
BsaXI	ACNNNNNCTCC	2 cut(s)	356, 386
Bse118I	RCCGGY	1 cut(s)	262
Bse1I	ACTGG	4 cut(s)	350, 366, 509, 546
Bse21I	CCTNAGG	1 cut(s)	462
Bse3DI	GCAATG	1 cut(s)	31
BseBI	CCWGG	1 cut(s)	428
BseDI	CCNNGG	2 cut(s)	426, 427
BseGI	GGATG	2 cut(s)	565, 747
BseMI	GCAATG	1 cut(s)	31
BseMII	CTCAG	3 cut(s)	285, 348, 660
BseNI	ACTGG	4 cut(s)	350, 366, 509, 546
BseSI	GKGCMC	1 cut(s)	272
BseXI	GCAGC	1 cut(s)	132
BshFI	GGCC	2 cut(s)	270, 432
BshTI	ACCGGT	1 cut(s)	262
BsiHKAI	GWGCWC	1 cut(s)	369
BsiSI	CCGG	2 cut(s)	263, 272
BslFI	GGGAC	1 cut(s)	200
BsmAI	GTCTC	2 cut(s)	334, 649
BsmFI	GGGAC	1 cut(s)	200
BsnI	GGCC	2 cut(s)	270, 432
Bsp119I	TTCGAA	1 cut(s)	310
Bsp120I	GGGCCC	1 cut(s)	268
Bsp1286I	GDGCHC	2 cut(s)	272, 369
Bsp1407I	TGTACA	1 cut(s)	403
Bsp143I	GATC	2 cut(s)	448, 487
BspACI	CCGC	2 cut(s)	53, 163
BspANI	GGCC	2 cut(s)	270, 432
BspCNI	CTCAG	3 cut(s)	286, 347, 659
BspLI	GGNNCC	1 cut(s)	270
BspPI	GGATC	1 cut(s)	495
BspQI	GCTCTTC	2 cut(s)	583, 782
BspT104I	TTCGAA	1 cut(s)	310
BsrDI	GCAATG	1 cut(s)	31
BsrFI	RCCGGY	1 cut(s)	262
BsrGI	TGTACA	1 cut(s)	403
BsrI	ACTGG	4 cut(s)	350, 366, 509, 546
BssAI	RCCGGY	1 cut(s)	262
BssECI	CCNNGG	2 cut(s)	426, 427
BssMI	GATC	2 cut(s)	448, 487
Bst2UI	CCWGG	1 cut(s)	428
Bst4CI	ACNGT	2 cut(s)	516, 771
Bst6I	CTCTTC	3 cut(s)	295, 583, 782
BstAUI	TGTACA	1 cut(s)	403
BstBI	TTCGAA	1 cut(s)	310
BstDEI	CTNAG	5 cut(s)	294, 334, 462, 640, 646
BstF5I	GGATG	2 cut(s)	565, 747
BstKTI	GATC	2 cut(s)	451, 490
BstMAI	GTCTC	2 cut(s)	334, 649
BstMBI	GATC	2 cut(s)	448, 487
BstMWI	GCNNNNNNNGC	1 cut(s)	256
BstNI	CCWGG	1 cut(s)	428
BstNSI	RCATGY	3 cut(s)	373, 618, 626
BstPAI	GACNNNNGTC	1 cut(s)	249
BstSCI	CCNGG	2 cut(s)	270, 426
BstSLI	GKGCMC	1 cut(s)	272
BstV1I	GCAGC	1 cut(s)	132
Bsu36I	CCTNAGG	1 cut(s)	462
BsuRI	GGCC	2 cut(s)	270, 432
BtsCI	GGATG	2 cut(s)	565, 747
BtsI	GCAGTG	1 cut(s)	455
BtsIMutI	CAGTG	3 cut(s)	343, 455, 553
Cfr10I	RCCGGY	1 cut(s)	262
Cfr13I	GGNCC	5 cut(s)	244, 268, 269, 430, 530
CseI	GACGC	1 cut(s)	239
Csp6I	GTAC	3 cut(s)	359, 404, 512
CspAI	ACCGGT	1 cut(s)	262
CviAII	CATG	4 cut(s)	37, 370, 615, 623
CviJI	RGCY	9 cut(s)	56, 77, 215, 270, 425, 432, 545, 576, 704
CviKI_1	RGCY	9 cut(s)	56, 77, 215, 270, 425, 432, 545, 576, 704
CviQI	GTAC	3 cut(s)	359, 404, 512
DdeI	CTNAG	5 cut(s)	294, 334, 462, 640, 646
DpnI	GATC	2 cut(s)	450, 489
DpnII	GATC	2 cut(s)	448, 487
Eam1104I	CTCTTC	3 cut(s)	295, 583, 782
EarI	CTCTTC	3 cut(s)	295, 583, 782
EciI	GGCGGA	1 cut(s)	178
Eco24I	GRGCYC	1 cut(s)	272
Eco47I	GGWCC	2 cut(s)	244, 530
Eco57I	CTGAAG	1 cut(s)	111
Eco81I	CCTNAGG	1 cut(s)	462
EcoRII	CCWGG	1 cut(s)	426
EcoT38I	GRGCYC	1 cut(s)	272
FaeI	CATG	4 cut(s)	40, 373, 618, 626
FalI	AAGNNNNNCTT	2 cut(s)	291, 323
FaqI	GGGAC	1 cut(s)	200
FatI	CATG	4 cut(s)	36, 369, 614, 622
FbaI	TGATCA	1 cut(s)	448
Fnu4HI	GCNGC	2 cut(s)	54, 121
FokI	GGATG	2 cut(s)	572, 754
FriOI	GRGCYC	1 cut(s)	272
Fsp4HI	GCNGC	2 cut(s)	54, 121
FspBI	CTAG	1 cut(s)	48
GluI	GCNGC	2 cut(s)	54, 121
GsuI	CTGGAG	2 cut(s)	367, 383
HaeIII	GGCC	2 cut(s)	270, 432
HapII	CCGG	2 cut(s)	263, 272
HgaI	GACGC	1 cut(s)	239
Hin1II	CATG	4 cut(s)	40, 373, 618, 626
HinfI	GANTC	4 cut(s)	224, 232, 696, 764
HpaII	CCGG	2 cut(s)	263, 272
HphI	GGTGA	3 cut(s)	41, 485, 759
Hpy166II	GTNNAC	5 cut(s)	45, 244, 304, 404, 476
Hpy188I	TCNGA	6 cut(s)	150, 295, 325, 337, 419, 649
Hpy188III	TCNNGA	1 cut(s)	523
Hpy8I	GTNNAC	5 cut(s)	45, 244, 304, 404, 476
HpyAV	CCTTC	3 cut(s)	8, 317, 389
HpyCH4III	ACNGT	2 cut(s)	516, 771
HpyCH4V	TGCA	3 cut(s)	414, 669, 793
HpyF10VI	GCNNNNNNNGC	1 cut(s)	256
HpyF3I	CTNAG	5 cut(s)	294, 334, 462, 640, 646
Hsp92II	CATG	4 cut(s)	40, 373, 618, 626
Ksp22I	TGATCA	1 cut(s)	448
Kzo9I	GATC	2 cut(s)	448, 487
LguI	GCTCTTC	2 cut(s)	583, 782
LmnI	GCTCC	2 cut(s)	68, 364
Lsp1109I	GCAGC	1 cut(s)	132
LweI	GCATC	2 cut(s)	423, 604
MaeI	CTAG	1 cut(s)	48
MaeIII	GTNAC	2 cut(s)	604, 678
MalI	GATC	2 cut(s)	450, 489
MboI	GATC	2 cut(s)	448, 487
MboII	GAAGA	7 cut(s)	23, 215, 282, 428, 570, 769, 773
MhlI	GDGCHC	2 cut(s)	272, 369
MluCI	AATT	4 cut(s)	5, 89, 467, 685
MlyI	GAGTC	1 cut(s)	241
MnlI	CCTC	8 cut(s)	133, 153, 159, 168, 298, 478, 543, 550
MseI	TTAA	1 cut(s)	723
MspI	CCGG	2 cut(s)	263, 272
MspR9I	CCNGG	2 cut(s)	272, 428
MvaI	CCWGG	1 cut(s)	428
MwoI	GCNNNNNNNGC	1 cut(s)	256
NciI	CCSGG	1 cut(s)	272
NdeII	GATC	2 cut(s)	448, 487
NlaIII	CATG	4 cut(s)	40, 373, 618, 626
NlaIV	GGNNCC	1 cut(s)	270
NmuCI	GTSAC	1 cut(s)	604
NspI	RCATGY	3 cut(s)	373, 618, 626
NspV	TTCGAA	1 cut(s)	310
PasI	CCCWGGG	1 cut(s)	427
PciI	ACATGT	1 cut(s)	369
PciSI	GCTCTTC	2 cut(s)	583, 782
PfeI	GAWTC	3 cut(s)	224, 696, 764
PinAI	ACCGGT	1 cut(s)	262
PkrI	GCNGC	2 cut(s)	55, 122
PleI	GAGTC	1 cut(s)	240
PpsI	GAGTC	1 cut(s)	240
PscI	ACATGT	1 cut(s)	369
PshAI	GACNNNNGTC	1 cut(s)	249
Psp6I	CCWGG	1 cut(s)	426
PspGI	CCWGG	1 cut(s)	426
PspN4I	GGNNCC	1 cut(s)	270
PspOMI	GGGCCC	1 cut(s)	268
PspPI	GGNCC	5 cut(s)	244, 268, 269, 430, 530
RsaI	GTAC	3 cut(s)	360, 405, 513
RsaNI	GTAC	3 cut(s)	359, 404, 512
SapI	GCTCTTC	2 cut(s)	583, 782
SaqAI	TTAA	1 cut(s)	723
SatI	GCNGC	2 cut(s)	54, 121
Sau3AI	GATC	2 cut(s)	448, 487
Sau96I	GGNCC	5 cut(s)	244, 268, 269, 430, 530
SchI	GAGTC	1 cut(s)	241
ScrFI	CCNGG	2 cut(s)	272, 428
SduI	GDGCHC	2 cut(s)	272, 369
SetI	ASST	8 cut(s)	179, 217, 290, 309, 400, 411, 535, 723
SfaNI	GCATC	2 cut(s)	423, 604
SfuI	TTCGAA	1 cut(s)	310
SinI	GGWCC	2 cut(s)	244, 530
SmlI	CTYRAG	1 cut(s)	736
SmoI	CTYRAG	1 cut(s)	736
Sse9I	AATT	4 cut(s)	5, 89, 467, 685
SsiI	CCGC	2 cut(s)	53, 163
SspMI	CTAG	1 cut(s)	48
StyD4I	CCNGG	2 cut(s)	270, 426
TaaI	ACNGT	2 cut(s)	516, 771
TaqI	TCGA	3 cut(s)	310, 439, 611
TasI	AATT	4 cut(s)	5, 89, 467, 685
TatI	WGTACW	1 cut(s)	403
TauI	GCSGC	1 cut(s)	56
TfiI	GAWTC	3 cut(s)	224, 696, 764
Tru1I	TTAA	1 cut(s)	723
Tru9I	TTAA	1 cut(s)	723
TscAI	CASTG	3 cut(s)	350, 462, 553
TseFI	GTSAC	1 cut(s)	604
TseI	GCWGC	1 cut(s)	120
Tsp45I	GTSAC	1 cut(s)	604
TspDTI	ATGAA	4 cut(s)	87, 408, 758, 774
TspRI	CASTG	3 cut(s)	350, 462, 553
VpaK11BI	GGWCC	2 cut(s)	244, 530
XapI	RAATTY	4 cut(s)	5, 89, 467, 685
XceI	RCATGY	3 cut(s)	373, 618, 626
XspI	CTAG	1 cut(s)	48

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.