Rw6G033060

PHD-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0006788
Physical Location & Seq
Forward (+)
57263945 .. 57268287
4343 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G033060.1

Sequence Viewer

Length: 1827 bp
ATGGAATTTGAAGAAGGAAAAAGCAATGGTGATAGCATGGAGTTCACTAGGGCGGCTCGATGCTCCAAGAATGAAGCCAATGGTTTTGAATTTGCGATATGTAATGATGTTGCCAAGAGCAGCTCCTCAGGGGCAAGTGAGGGTATTCGGACTTACAAGAGGCGGAGGCGTGAGAGGTGGAGTTGGGACAGCAAATCACAGGAAGATGGGAGAGCTAATGGGGAATCTTGGAGTCAAATGGTGGACCAGCGTCTAAAGCAACCGGTGGGCCCGGTTATACACAACACCTCTTCTGAGCAAGTCCATCTTCGAATAAATAGTTCTGATGATTGCTCAGGGAGACAGTGGAGAAATGCCGTACTGGAGCACATGTGTCAGTCAATAAGTGATGATGAAGGTGGTGTACAGGTGTGCATCAGAGAAGCCCTCGGCCATCTTCGACAGATTGATCATACAGTGCCTAAGGAATTTGGTGAAGATAATGAGGATCGGCACAAGTGTTTTCTGCCAGTACGGTCAGTCTGGAATGGACCTCATAATGTAGCCAGTGGGCAGGAGGATGTTATATCTAATGGCTCTTCAAGTAAATCAAAGCATCATACAGTCACTTCGACGTGCCAACATGCTTTTTTCAATATCTTAGTCTCAGAGAAGTTTGCTTTATTGTGCAAGCTGCTGTTACAAAATTTTCAAGGAATCAAGGCTGACAGCATTTTTGACCTTAAACACATAAACTCAAGGATGAAAAGTGGAGTTTATGAAGATTCACCGTTGCTCTTCTCAAAGGATATGCAACAGGTATGGAGAAAGCTTCAAGGGGTTGGTACGGAATTGATTTCCCTTGCAAAAAGCCTCTCGGACATGTCAAGGAGTTGCAAGGACCAGGTCGGAGGTTCAGGCTACAGCACATTTGAAGTTGGGAAAAATGAGTTCCACACCTTGGAATCTGACTCTTATCCTAAACTGGAGCAGACAGAGGATTGTGGTGTATACACAGTATACACTTGCAGGCACTGTGGAGACAAGGCAAATGGGAGTGATTGTCTAGTATGTGATTCATGTGAGGAGATGTACCATGTATCTTGCATTCAGCCTGCTGTCAAAGGCATTCCTACAAAAAGTTGGTATTGTGCAAGTTGCACTGCTTGTGTGTGTGAAAGGCTGATTGCCAGCAAAAGTCTAGTTGATGGAGTTGGCGGTGAAAATGTTCCTACAAATGAGGAAACAGTCGAGTTGGGAGATAACTCAAATTATAGTACAGATGATGGAATTCAACTATCTGAAGATAATGGCGACTTGAACCTTTGCAAAGTTTGTGGAGTTGTGGTAGTAAAGGGTGAGACGGTGAAAATATGTGGTCATCCATACTGCATGAACAAGTATTACCATGTGAGGTGTCTGACGGCAGGGCAGTTGAAGCTGTATGGTCCACGTTGGTACTGCCCTTCTTGTCTATGCAGAGCTTGTCTCACCGATAAAGATGATGATAAGATTGTTCTTTGTGATGGCTGCGATCATGCGTACCATATCTATTGCTTGAACCCACCACTCTGTTCCATTCCAAAAGGAAAATGGTTTTGCAGAAAATGTGATGCAACAATTCAGATGATACGCAGAGCAAAAAGGGCTTATCAAAAAAATGAAAAGCAACAGGATAAGAAAAGTGAAGGATCAATTAAGTGGAATGAAAAAGTTGATGATGGAGAATCAGAACAAGGTAGGGGGGGAATGGATGTGCTTCTGCATGCAGTCAAGACTCTAGATCATGAAAAGAAAATGGCTGCTACTGAGATAATGAGAAACTTTCAGGACAGACAGAATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD

Protein Analysis

608

Amino Acids

68.17

Weight (kDa)

6.23

Isoelectric Point (pI)

48.14

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD PF00628 336 - 380 9.5e-08 PHD-finger
PHD PF00628 486 - 530 2.9e-11 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 940
AccI GTMKAC 2 cut(s) 990, 999
AciI CCGC 3 cut(s) 53, 163, 1197
AclWI GGATC 2 cut(s) 495, 1678
AcoI YGGCCR 1 cut(s) 430
AcsI RAATTY 6 cut(s) 5, 89, 467, 685, 1269, 1819
AcuI CTGAAG 1 cut(s) 1302
AfaI GTAC 8 cut(s) 360, 405, 513, 826, 1073, 1258, 1439, 1523
AfiI CCNNNNNNNGG 1 cut(s) 940
AflIII ACRYGT 2 cut(s) 369, 861
AgeI ACCGGT 1 cut(s) 262
AjiI CACGTC 1 cut(s) 615
AjnI CCWGG 1 cut(s) 882
AluBI AGCT 6 cut(s) 123, 215, 673, 811, 1420, 1463
AluI AGCT 6 cut(s) 123, 215, 673, 811, 1420, 1463
Alw21I GWGCWC 1 cut(s) 369
Alw26I GTCTC 5 cut(s) 334, 649, 1014, 1334, 1472
AlwI GGATC 2 cut(s) 495, 1678
AlwNI CAGNNNCTG 1 cut(s) 1014
AoxI GGCC 2 cut(s) 268, 430
ApaI GGGCCC 1 cut(s) 272
ApeKI GCWGC 4 cut(s) 120, 673, 1509, 1781
ApoI RAATTY 6 cut(s) 5, 89, 467, 685, 1269, 1819
ArsI GACNNNNNNTTYG 2 cut(s) 698, 730
AsiGI ACCGGT 1 cut(s) 262
Asp700I GAANNNNTTC 1 cut(s) 1206
AspS9I GGNCC 6 cut(s) 244, 268, 269, 530, 880, 1427
AsuC2I CCSGG 1 cut(s) 272
AsuHPI GGTGA 7 cut(s) 41, 485, 759, 1211, 1349, 1357, 1462
AsuII TTCGAA 1 cut(s) 310
AvaII GGWCC 4 cut(s) 244, 530, 880, 1427
AxyI CCTNAGG 2 cut(s) 127, 462
BaeGI GKGCMC 1 cut(s) 272
BanII GRGCYC 1 cut(s) 272
BarI GAAGNNNNNNTAC 2 cut(s) 387, 419
Bbv12I GWGCWC 1 cut(s) 369
BbvI GCAGC 4 cut(s) 132, 660, 1496, 1768
BccI CCATC 7 cut(s) 200, 312, 441, 1181, 1259, 1499, 1694
BceAI ACGGC 2 cut(s) 341, 1419
BciT130I CCWGG 1 cut(s) 884
BclI TGATCA 1 cut(s) 448
BcnI CCSGG 1 cut(s) 272
BcoDI GTCTC 5 cut(s) 334, 649, 1014, 1334, 1472
BfaI CTAG 4 cut(s) 48, 1046, 1181, 1760
BfmI CTRYAG 1 cut(s) 901
BisI GCNGC 5 cut(s) 54, 121, 674, 1510, 1782
BlsI GCNGC 5 cut(s) 55, 122, 675, 1511, 1783
Bme1390I CCNGG 2 cut(s) 272, 884
Bme18I GGWCC 4 cut(s) 244, 530, 880, 1427
BmgBI CACGTC 1 cut(s) 615
BmgT120I GGNCC 6 cut(s) 244, 268, 269, 530, 880, 1427
BmiI GGNNCC 1 cut(s) 270
BmrFI CCNGG 2 cut(s) 272, 884
BmsI GCATC 4 cut(s) 50, 423, 604, 1582
BoxI GACNNNNGTC 1 cut(s) 249
BplI GAGNNNNNCTC 4 cut(s) 411, 443, 1452, 1484
BpmI CTGGAG 2 cut(s) 383, 986
Bpu10I CCTNAGC 1 cut(s) 334
Bpu14I TTCGAA 1 cut(s) 310
BpuEI CTTGAG 1 cut(s) 721
BpuMI CCSGG 1 cut(s) 272
BsaJI CCNNGG 2 cut(s) 427, 939
BsaWI WCCGGW 1 cut(s) 262
BsaXI ACNNNNNCTCC 6 cut(s) 356, 386, 1027, 1057, 1311, 1341
Bsc4I CCNNNNNNNGG 1 cut(s) 940
Bse118I RCCGGY 1 cut(s) 262
Bse1I ACTGG 4 cut(s) 366, 509, 546, 969
Bse21I CCTNAGG 2 cut(s) 127, 462
Bse3DI GCAATG 1 cut(s) 31
BseBI CCWGG 1 cut(s) 884
BseDI CCNNGG 2 cut(s) 427, 939
BseGI GGATG 4 cut(s) 565, 747, 1360, 1738
BseLI CCNNNNNNNGG 1 cut(s) 940
BseMI GCAATG 1 cut(s) 31
BseMII CTCAG 5 cut(s) 141, 285, 348, 660, 1779
BseNI ACTGG 4 cut(s) 366, 509, 546, 969
BseRI GAGGAG 2 cut(s) 115, 1079
BseSI GKGCMC 1 cut(s) 272
BseXI GCAGC 4 cut(s) 132, 660, 1496, 1768
BshFI GGCC 2 cut(s) 270, 432
BshTI ACCGGT 1 cut(s) 262
BsiHKAI GWGCWC 1 cut(s) 369
BsiSI CCGG 2 cut(s) 263, 272
BslFI GGGAC 1 cut(s) 200
BslI CCNNNNNNNGG 1 cut(s) 940
BsmAI GTCTC 5 cut(s) 334, 649, 1014, 1334, 1472
BsmBI CGTCTC 1 cut(s) 1334
BsmFI GGGAC 1 cut(s) 200
BsmI GAATGC 2 cut(s) 1086, 1107
BsnI GGCC 2 cut(s) 270, 432
Bsp119I TTCGAA 1 cut(s) 310
Bsp120I GGGCCC 1 cut(s) 268
Bsp1286I GDGCHC 2 cut(s) 272, 369
Bsp1407I TGTACA 1 cut(s) 403
Bsp143I GATC 5 cut(s) 448, 487, 1513, 1670, 1762
BspACI CCGC 3 cut(s) 53, 163, 1197
BspANI GGCC 2 cut(s) 270, 432
BspCNI CTCAG 5 cut(s) 140, 286, 347, 659, 1780
BspHI TCATGA 1 cut(s) 1765
BspLI GGNNCC 1 cut(s) 270
BspPI GGATC 2 cut(s) 495, 1678
BspQI GCTCTTC 2 cut(s) 583, 782
BspT104I TTCGAA 1 cut(s) 310
BsrDI GCAATG 1 cut(s) 31
BsrFI RCCGGY 1 cut(s) 262
BsrGI TGTACA 1 cut(s) 403
BsrI ACTGG 4 cut(s) 366, 509, 546, 969
BssAI RCCGGY 1 cut(s) 262
BssECI CCNNGG 2 cut(s) 427, 939
BssMI GATC 5 cut(s) 448, 487, 1513, 1670, 1762
BssNAI GTATAC 2 cut(s) 991, 1000
BssT1I CCWWGG 1 cut(s) 939
Bst1107I GTATAC 2 cut(s) 991, 1000
Bst2UI CCWGG 1 cut(s) 884
Bst4CI ACNGT 9 cut(s) 345, 457, 516, 604, 771, 997, 1016, 1228, 1345
Bst6I CTCTTC 3 cut(s) 295, 583, 782
BstAUI TGTACA 1 cut(s) 403
BstBI TTCGAA 1 cut(s) 310
BstC8I GCNNGC 5 cut(s) 671, 1010, 1095, 1171, 1746
BstDEI CTNAG 7 cut(s) 127, 294, 334, 462, 640, 646, 1788
BstF5I GGATG 4 cut(s) 565, 747, 1360, 1738
BstKTI GATC 5 cut(s) 451, 490, 1516, 1673, 1765
BstMAI GTCTC 5 cut(s) 334, 649, 1014, 1334, 1472
BstMBI GATC 5 cut(s) 448, 487, 1513, 1670, 1762
BstMWI GCNNNNNNNGC 3 cut(s) 256, 1417, 1625
BstNI CCWGG 1 cut(s) 884
BstNSI RCATGY 4 cut(s) 373, 626, 865, 1748
BstPAI GACNNNNGTC 1 cut(s) 249
BstSCI CCNGG 2 cut(s) 270, 882
BstSFI CTRYAG 1 cut(s) 901
BstSLI GKGCMC 1 cut(s) 272
BstV1I GCAGC 4 cut(s) 132, 660, 1496, 1768
BstZ17I GTATAC 2 cut(s) 991, 1000
Bsu36I CCTNAGG 2 cut(s) 127, 462
BsuRI GGCC 2 cut(s) 270, 432
BtrI CACGTC 1 cut(s) 615
BtsCI GGATG 4 cut(s) 565, 747, 1360, 1738
BtsI GCAGTG 1 cut(s) 1140
BtsIMutI CAGTG 5 cut(s) 350, 462, 553, 1012, 1140
Cac8I GCNNGC 5 cut(s) 671, 1010, 1095, 1171, 1746
CaiI CAGNNNCTG 1 cut(s) 1014
CciI TCATGA 1 cut(s) 1765
Cfr10I RCCGGY 1 cut(s) 262
Cfr13I GGNCC 6 cut(s) 244, 268, 269, 530, 880, 1427
CseI GACGC 1 cut(s) 239
CsiI ACCWGGT 1 cut(s) 882
Csp6I GTAC 8 cut(s) 359, 404, 512, 825, 1072, 1257, 1438, 1522
CspAI ACCGGT 1 cut(s) 262
CspCI CAANNNNNGTGG 2 cut(s) 1297, 1332
CviQI GTAC 8 cut(s) 359, 404, 512, 825, 1072, 1257, 1438, 1522
DdeI CTNAG 7 cut(s) 127, 294, 334, 462, 640, 646, 1788
DpnI GATC 5 cut(s) 450, 489, 1515, 1672, 1764
DpnII GATC 5 cut(s) 448, 487, 1513, 1670, 1762
EaeI YGGCCR 1 cut(s) 430
Eam1104I CTCTTC 3 cut(s) 295, 583, 782
EarI CTCTTC 3 cut(s) 295, 583, 782
EciI GGCGGA 1 cut(s) 178
Eco130I CCWWGG 1 cut(s) 939
Eco24I GRGCYC 1 cut(s) 272
Eco47I GGWCC 4 cut(s) 244, 530, 880, 1427
Eco57I CTGAAG 1 cut(s) 1302
Eco81I CCTNAGG 2 cut(s) 127, 462
EcoRI GAATTC 1 cut(s) 1269
EcoRII CCWGG 1 cut(s) 882
EcoT14I CCWWGG 1 cut(s) 939
EcoT38I GRGCYC 1 cut(s) 272
ErhI CCWWGG 1 cut(s) 939
Esp3I CGTCTC 1 cut(s) 1334
FalI AAGNNNNNCTT 2 cut(s) 291, 323
FaqI GGGAC 1 cut(s) 200
FbaI TGATCA 1 cut(s) 448
FblI GTMKAC 2 cut(s) 990, 999
Fnu4HI GCNGC 5 cut(s) 54, 121, 674, 1510, 1782
FokI GGATG 4 cut(s) 572, 754, 1347, 1745
FriOI GRGCYC 1 cut(s) 272
Fsp4HI GCNGC 5 cut(s) 54, 121, 674, 1510, 1782
FspBI CTAG 4 cut(s) 48, 1046, 1181, 1760
GluI GCNGC 5 cut(s) 54, 121, 674, 1510, 1782
GsuI CTGGAG 2 cut(s) 383, 986
HaeIII GGCC 2 cut(s) 270, 432
HapII CCGG 2 cut(s) 263, 272
HgaI GACGC 1 cut(s) 239
HindIII AAGCTT 1 cut(s) 809
HinfI GANTC 9 cut(s) 224, 232, 696, 764, 944, 950, 1055, 1706, 1756
HpaII CCGG 2 cut(s) 263, 272
HphI GGTGA 7 cut(s) 41, 485, 759, 1211, 1349, 1357, 1462
Hpy166II GTNNAC 6 cut(s) 45, 244, 404, 991, 1000, 1430
Hpy188III TCNNGA 5 cut(s) 523, 1753, 1760, 1766, 1808
Hpy8I GTNNAC 6 cut(s) 45, 244, 404, 991, 1000, 1430
Hpy99I CGWCG 1 cut(s) 616
HpyAV CCTTC 4 cut(s) 8, 389, 1455, 1661
HpyCH4III ACNGT 9 cut(s) 345, 457, 516, 604, 771, 997, 1016, 1228, 1345
HpyCH4IV ACGT 2 cut(s) 614, 1432
HpyF10VI GCNNNNNNNGC 3 cut(s) 256, 1417, 1625
HpyF3I CTNAG 7 cut(s) 127, 294, 334, 462, 640, 646, 1788
HpySE526I ACGT 2 cut(s) 614, 1432
Ksp22I TGATCA 1 cut(s) 448
Kzo9I GATC 5 cut(s) 448, 487, 1513, 1670, 1762
LguI GCTCTTC 2 cut(s) 583, 782
LmnI GCTCC 4 cut(s) 68, 128, 364, 967
Lsp1109I GCAGC 4 cut(s) 132, 660, 1496, 1768
LweI GCATC 4 cut(s) 50, 423, 604, 1582
MabI ACCWGGT 1 cut(s) 882
MaeI CTAG 4 cut(s) 48, 1046, 1181, 1760
MaeII ACGT 2 cut(s) 614, 1432
MaeIII GTNAC 2 cut(s) 604, 678
MalI GATC 5 cut(s) 450, 489, 1515, 1672, 1764
MboI GATC 5 cut(s) 448, 487, 1513, 1670, 1762
MhlI GDGCHC 2 cut(s) 272, 369
MlyI GAGTC 3 cut(s) 241, 944, 1750
MmeI TCCRAC 1 cut(s) 868
MroXI GAANNNNTTC 1 cut(s) 1206
MseI TTAA 2 cut(s) 723, 1677
MspI CCGG 2 cut(s) 263, 272
MspR9I CCNGG 2 cut(s) 272, 884
Mva1269I GAATGC 2 cut(s) 1086, 1107
MvaI CCWGG 1 cut(s) 884
MwoI GCNNNNNNNGC 3 cut(s) 256, 1417, 1625
NciI CCSGG 1 cut(s) 272
NdeII GATC 5 cut(s) 448, 487, 1513, 1670, 1762
NlaIV GGNNCC 1 cut(s) 270
NmeAIII GCCGAG 1 cut(s) 408
NmuCI GTSAC 1 cut(s) 604
NspI RCATGY 4 cut(s) 373, 626, 865, 1748
NspV TTCGAA 1 cut(s) 310
PaeI GCATGC 1 cut(s) 1748
PagI TCATGA 1 cut(s) 1765
PciI ACATGT 2 cut(s) 369, 861
PciSI GCTCTTC 2 cut(s) 583, 782
PctI GAATGC 2 cut(s) 1086, 1107
PdmI GAANNNNTTC 1 cut(s) 1206
PfeI GAWTC 6 cut(s) 224, 696, 764, 944, 1055, 1706
PflFI GACNNNGTC 1 cut(s) 884
PflMI CCANNNNNTGG 1 cut(s) 940
PinAI ACCGGT 1 cut(s) 262
PkrI GCNGC 5 cut(s) 55, 122, 675, 1511, 1783
PleI GAGTC 3 cut(s) 240, 944, 1750
PpsI GAGTC 3 cut(s) 240, 944, 1750
PscI ACATGT 2 cut(s) 369, 861
PshAI GACNNNNGTC 1 cut(s) 249
Psp6I CCWGG 1 cut(s) 882
PspGI CCWGG 1 cut(s) 882
PspN4I GGNNCC 1 cut(s) 270
PspOMI GGGCCC 1 cut(s) 268
PspPI GGNCC 6 cut(s) 244, 268, 269, 530, 880, 1427
PsrI GAACNNNNNNTAC 2 cut(s) 1367, 1399
PstNI CAGNNNCTG 1 cut(s) 1014
PsyI GACNNNGTC 1 cut(s) 884
RsaI GTAC 8 cut(s) 360, 405, 513, 826, 1073, 1258, 1439, 1523
RsaNI GTAC 8 cut(s) 359, 404, 512, 825, 1072, 1257, 1438, 1522
SapI GCTCTTC 2 cut(s) 583, 782
SaqAI TTAA 2 cut(s) 723, 1677
SatI GCNGC 5 cut(s) 54, 121, 674, 1510, 1782
Sau3AI GATC 5 cut(s) 448, 487, 1513, 1670, 1762
Sau96I GGNCC 6 cut(s) 244, 268, 269, 530, 880, 1427
SchI GAGTC 3 cut(s) 241, 944, 1750
ScrFI CCNGG 2 cut(s) 272, 884
SduI GDGCHC 2 cut(s) 272, 369
SexAI ACCWGGT 1 cut(s) 882
SfaNI GCATC 4 cut(s) 50, 423, 604, 1582
SfcI CTRYAG 1 cut(s) 901
SfuI TTCGAA 1 cut(s) 310
SinI GGWCC 4 cut(s) 244, 530, 880, 1427
SmlI CTYRAG 1 cut(s) 736
SmoI CTYRAG 1 cut(s) 736
SphI GCATGC 1 cut(s) 1748
SsiI CCGC 3 cut(s) 53, 163, 1197
SspMI CTAG 4 cut(s) 48, 1046, 1181, 1760
StyD4I CCNGG 2 cut(s) 270, 882
StyI CCWWGG 1 cut(s) 939
TaaI ACNGT 9 cut(s) 345, 457, 516, 604, 771, 997, 1016, 1228, 1345
TaiI ACGT 2 cut(s) 617, 1435
TaqI TCGA 5 cut(s) 58, 310, 439, 611, 1230
TatI WGTACW 2 cut(s) 403, 1256
TauI GCSGC 1 cut(s) 56
TfiI GAWTC 6 cut(s) 224, 696, 764, 944, 1055, 1706
Tru1I TTAA 2 cut(s) 723, 1677
Tru9I TTAA 2 cut(s) 723, 1677
TscAI CASTG 5 cut(s) 350, 462, 553, 1019, 1147
TseFI GTSAC 1 cut(s) 604
TseI GCWGC 4 cut(s) 120, 673, 1509, 1781
Tsp45I GTSAC 1 cut(s) 604
TspDTI ATGAA 9 cut(s) 87, 408, 758, 774, 1047, 1388, 1656, 1701, 1782
TspGWI ACGGA 1 cut(s) 842
TspRI CASTG 5 cut(s) 350, 462, 553, 1019, 1147
Tth111I GACNNNGTC 1 cut(s) 884
Van91I CCANNNNNTGG 1 cut(s) 940
VpaK11BI GGWCC 4 cut(s) 244, 530, 880, 1427
XapI RAATTY 6 cut(s) 5, 89, 467, 685, 1269, 1819
XbaI TCTAGA 1 cut(s) 1759
XceI RCATGY 4 cut(s) 373, 626, 865, 1748
XcmI CCANNNNNNNNNTGG 1 cut(s) 1569
XmiI GTMKAC 2 cut(s) 990, 999
XmnI GAANNNNTTC 1 cut(s) 1206
XspI CTAG 4 cut(s) 48, 1046, 1181, 1760
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.