Rh6CG391600

PHD-finger

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0006788
Physical Location & Seq
Forward (+)
57789876 .. 57795593
5718 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG391600.1

Sequence Viewer

Length: 1719 bp
ATGATAAAAGATAAACATATTCTATCTCCATCCCTTCAATCCTCATATTTCTTTTGGATGATAACCTTTTATCTTAGTTTTTCTCATCAACCTGTGCTTGATTTCTTGAAGCGTCTAAAGCAACCGGTGGGCCCAGTTATACACAACACCTCTTCTGAGCAAGTCCATCTTCGAATAAATAGTTCTGATGATTGCTCAGGGAGACAGTGGAGAAATGCTGTACTGGAGCACATGTGTCAGTCAATAAGTGATGATGAAGGTGGTGTACAGGTGTGCATCAGAGAAGCCCTGGGCCATCTTCGACAGATTGATCATACAGTGCCTAAGGAATTTGGTGAAGATAATGAGGATCGGCACAAGTGTTTTCTGCCAGTACGGTCAGTCTGGAATGGACCTCATAATGTAGCCAGTGGGCAGGAGGATGTTATATCTAATGGCTCTTCAAGTAAATCAAAGCATCATACAGTCACTTCGACGTGCCAACATGCTTTTTTCAATATCTTGGTCTCAGAGAAGTTTGCTTTATTGTGCAAGCTGCTGTTACAAAATTTTCAAGGAATCAAGGCTGACAGCATTTTTGACCTTAAACACATAAACTCAAGGATGAAAAGTGGAGTTTATGAAGATTCACCGTTGCTCTTCTCAAAGGATATGCAACAGGTATGGAGAAAGCTTCAAGGGGTTGGTACGGAATTGATTTCCCTTGCAAAAAGCCTCTCGGACATGTCAAGGAGTTGCAAGGACCAGGTCGGAGGTTCAGGCTACAGCACGTTAGAAGTTGGGAAAAATGAGTTCCACACCTTGGAATCTGACTCTTATCCTAAACTGGAGCAGACAGAGGATTGCGGTGTATACACAGTATACACTTGCAGGCACTGTGGAGACAAGGCAAATGGGAGTGATTGTCTAGTATGTGATTCATGTGAGGAGATGTACCATGTATCTTGCATTCAGCCTGCTGTCAAAGGCATTCCTACAAAAAGTTGGTATTGTGCAAGTTGCACTGCTTGCGGTATTGCATCACCGCATGAGAATTGTGAAGTGTGTGAAAGGCTGATTGCCAGCAAAAGTCTAGTTGATGGAGTTGGCGGTGAAAATGTTCCTACAAATGAGGAAACAGTTGAGTTGGGAGATAACTCAAATTATAGTACAGATGATGGAATTCAACTATCTGAAGATAACGGCGACTTGAACCTTTGCAAAGTTTGTGGAGTTGTGGTAGTAAAGGGTGAGACGGTGAAAATATGTGGTCATCCATACTGCATGAACAAGTACTACCATGTGAGGTGTCTGACGGCAGGGCAGTTGAAGCTGTATGGTCCACGTTGGTACTGCCCTTCTTGTCTATGCAGAGCTTGTCTCACCGATAAAGATGATGATAAGATTGTTCTTTGTGATGGCTGCGATCATGCGTACCATATCTATTGCTTGAACCCACCACTCTGTTCCATTCCAAAAGGAAAATGGTTTTGCAGAAAATGTGATGCAACAATTCAGATGATACGCAGAGCAAAAAGGGCTTATCAAAAAAATGAAAAGCAACAGGATAAGAAAAGTGAAGGATCAATAAAGTGGAATGAAAAAGTTGATGATGGAGAATCAGAACAAGGTAGGGGGGGAATGGATGTGCTTCTGCATGCAGTCAAGACTCTAGATCATGAAAAGAAAATGGCTGCTACTGAGATAATGAGAAACTTTCAGGACAGACAGAATTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
PHD

Protein Analysis

572

Amino Acids

64.21

Weight (kDa)

6.29

Isoelectric Point (pI)

49.56

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PHD PF00628 290 - 334 8.8e-08 PHD-finger
PHD PF00628 450 - 494 2.7e-11 PHD-finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 802
AccI GTMKAC 2 cut(s) 852, 861
AciI CCGC 4 cut(s) 846, 1011, 1025, 1089
AclWI GGATC 2 cut(s) 357, 1570
AcsI RAATTY 4 cut(s) 329, 547, 1161, 1711
AcuI CTGAAG 1 cut(s) 1194
AfaI GTAC 9 cut(s) 222, 267, 375, 688, 935, 1150, 1274, 1331, 1415
AfiI CCNNNNNNNGG 1 cut(s) 802
AflIII ACRYGT 2 cut(s) 231, 723
AgeI ACCGGT 1 cut(s) 124
AjiI CACGTC 1 cut(s) 477
AjnI CCWGG 2 cut(s) 288, 744
AluBI AGCT 4 cut(s) 535, 673, 1312, 1355
AluI AGCT 4 cut(s) 535, 673, 1312, 1355
Alw21I GWGCWC 1 cut(s) 231
Alw26I GTCTC 5 cut(s) 196, 511, 876, 1226, 1364
AlwI GGATC 2 cut(s) 357, 1570
AlwNI CAGNNNCTG 1 cut(s) 876
AoxI GGCC 2 cut(s) 130, 292
ApaI GGGCCC 1 cut(s) 134
ApeKI GCWGC 3 cut(s) 535, 1401, 1673
ApoI RAATTY 4 cut(s) 329, 547, 1161, 1711
ArsI GACNNNNNNTTYG 2 cut(s) 560, 592
AsiGI ACCGGT 1 cut(s) 124
Asp700I GAANNNNTTC 1 cut(s) 1098
AspS9I GGNCC 6 cut(s) 130, 131, 292, 392, 742, 1319
AsuHPI GGTGA 7 cut(s) 347, 621, 1014, 1103, 1241, 1249, 1354
AsuII TTCGAA 1 cut(s) 172
AvaII GGWCC 3 cut(s) 392, 742, 1319
AxyI CCTNAGG 1 cut(s) 324
BaeGI GKGCMC 1 cut(s) 134
BanII GRGCYC 1 cut(s) 134
BarI GAAGNNNNNNTAC 2 cut(s) 249, 281
Bbv12I GWGCWC 1 cut(s) 231
BbvI GCAGC 3 cut(s) 522, 1388, 1660
BccI CCATC 7 cut(s) 37, 174, 303, 1073, 1151, 1391, 1586
BceAI ACGGC 2 cut(s) 1198, 1311
BciT130I CCWGG 2 cut(s) 290, 746
BclI TGATCA 1 cut(s) 310
BcoDI GTCTC 5 cut(s) 196, 511, 876, 1226, 1364
BfaI CTAG 3 cut(s) 908, 1073, 1652
BfmI CTRYAG 1 cut(s) 763
BisI GCNGC 3 cut(s) 536, 1402, 1674
BlsI GCNGC 3 cut(s) 537, 1403, 1675
BmcAI AGTACT 1 cut(s) 1274
Bme1390I CCNGG 2 cut(s) 290, 746
Bme18I GGWCC 3 cut(s) 392, 742, 1319
BmgBI CACGTC 1 cut(s) 477
BmgT120I GGNCC 6 cut(s) 130, 131, 292, 392, 742, 1319
BmiI GGNNCC 1 cut(s) 132
BmrFI CCNGG 2 cut(s) 290, 746
BmrI ACTGGG 1 cut(s) 128
BmsI GCATC 4 cut(s) 285, 466, 1028, 1474
BmuI ACTGGG 1 cut(s) 128
BplI GAGNNNNNCTC 2 cut(s) 1344, 1376
BpmI CTGGAG 2 cut(s) 245, 848
Bpu10I CCTNAGC 1 cut(s) 196
Bpu14I TTCGAA 1 cut(s) 172
BpuEI CTTGAG 1 cut(s) 583
BsaI GGTCTC 1 cut(s) 511
BsaJI CCNNGG 3 cut(s) 288, 289, 801
BsaWI WCCGGW 1 cut(s) 124
BsaXI ACNNNNNCTCC 6 cut(s) 218, 248, 889, 919, 1203, 1233
Bsc4I CCNNNNNNNGG 1 cut(s) 802
Bse118I RCCGGY 1 cut(s) 124
Bse1I ACTGG 5 cut(s) 134, 228, 371, 408, 831
Bse21I CCTNAGG 1 cut(s) 324
BseBI CCWGG 2 cut(s) 290, 746
BseDI CCNNGG 3 cut(s) 288, 289, 801
BseGI GGATG 6 cut(s) 29, 63, 427, 609, 1252, 1630
BseLI CCNNNNNNNGG 1 cut(s) 802
BseMII CTCAG 4 cut(s) 147, 210, 522, 1671
BseNI ACTGG 5 cut(s) 134, 228, 371, 408, 831
BseRI GAGGAG 1 cut(s) 941
BseSI GKGCMC 1 cut(s) 134
BseXI GCAGC 3 cut(s) 522, 1388, 1660
BshFI GGCC 2 cut(s) 132, 294
BshTI ACCGGT 1 cut(s) 124
BsiHKAI GWGCWC 1 cut(s) 231
BsiSI CCGG 1 cut(s) 125
BslI CCNNNNNNNGG 1 cut(s) 802
BsmAI GTCTC 5 cut(s) 196, 511, 876, 1226, 1364
BsmBI CGTCTC 1 cut(s) 1226
BsmI GAATGC 2 cut(s) 948, 969
BsnI GGCC 2 cut(s) 132, 294
Bso31I GGTCTC 1 cut(s) 511
Bsp119I TTCGAA 1 cut(s) 172
Bsp120I GGGCCC 1 cut(s) 130
Bsp1286I GDGCHC 2 cut(s) 134, 231
Bsp1407I TGTACA 1 cut(s) 265
Bsp143I GATC 5 cut(s) 310, 349, 1405, 1562, 1654
BspACI CCGC 4 cut(s) 846, 1011, 1025, 1089
BspANI GGCC 2 cut(s) 132, 294
BspCNI CTCAG 4 cut(s) 148, 209, 521, 1672
BspHI TCATGA 1 cut(s) 1657
BspLI GGNNCC 1 cut(s) 132
BspPI GGATC 2 cut(s) 357, 1570
BspQI GCTCTTC 2 cut(s) 445, 644
BspT104I TTCGAA 1 cut(s) 172
BspTNI GGTCTC 1 cut(s) 511
BsrFI RCCGGY 1 cut(s) 124
BsrGI TGTACA 1 cut(s) 265
BsrI ACTGG 5 cut(s) 134, 228, 371, 408, 831
BssAI RCCGGY 1 cut(s) 124
BssECI CCNNGG 3 cut(s) 288, 289, 801
BssMI GATC 5 cut(s) 310, 349, 1405, 1562, 1654
BssNAI GTATAC 2 cut(s) 853, 862
BssT1I CCWWGG 1 cut(s) 801
Bst1107I GTATAC 2 cut(s) 853, 862
Bst2UI CCWGG 2 cut(s) 290, 746
Bst4CI ACNGT 9 cut(s) 207, 319, 378, 466, 633, 859, 878, 1120, 1237
Bst6I CTCTTC 3 cut(s) 157, 445, 644
BstAPI GCANNNNNTGC 1 cut(s) 1008
BstAUI TGTACA 1 cut(s) 265
BstBI TTCGAA 1 cut(s) 172
BstC8I GCNNGC 6 cut(s) 533, 872, 957, 1009, 1063, 1638
BstDEI CTNAG 6 cut(s) 74, 156, 196, 324, 508, 1680
BstF5I GGATG 6 cut(s) 29, 63, 427, 609, 1252, 1630
BstKTI GATC 5 cut(s) 313, 352, 1408, 1565, 1657
BstMAI GTCTC 5 cut(s) 196, 511, 876, 1226, 1364
BstMBI GATC 5 cut(s) 310, 349, 1405, 1562, 1654
BstMWI GCNNNNNNNGC 4 cut(s) 118, 1008, 1309, 1517
BstNI CCWGG 2 cut(s) 290, 746
BstNSI RCATGY 4 cut(s) 235, 488, 727, 1640
BstSCI CCNGG 2 cut(s) 288, 744
BstSFI CTRYAG 1 cut(s) 763
BstSLI GKGCMC 1 cut(s) 134
BstV1I GCAGC 3 cut(s) 522, 1388, 1660
BstZ17I GTATAC 2 cut(s) 853, 862
Bsu36I CCTNAGG 1 cut(s) 324
BsuRI GGCC 2 cut(s) 132, 294
BtrI CACGTC 1 cut(s) 477
BtsCI GGATG 6 cut(s) 29, 63, 427, 609, 1252, 1630
BtsI GCAGTG 1 cut(s) 1002
BtsIMutI CAGTG 5 cut(s) 212, 324, 415, 874, 1002
Cac8I GCNNGC 6 cut(s) 533, 872, 957, 1009, 1063, 1638
CaiI CAGNNNCTG 1 cut(s) 876
CciI TCATGA 1 cut(s) 1657
Cfr10I RCCGGY 1 cut(s) 124
Cfr13I GGNCC 6 cut(s) 130, 131, 292, 392, 742, 1319
CseI GACGC 1 cut(s) 101
CsiI ACCWGGT 1 cut(s) 744
Csp6I GTAC 9 cut(s) 221, 266, 374, 687, 934, 1149, 1273, 1330, 1414
CspAI ACCGGT 1 cut(s) 124
CspCI CAANNNNNGTGG 2 cut(s) 1189, 1224
CviQI GTAC 9 cut(s) 221, 266, 374, 687, 934, 1149, 1273, 1330, 1414
DdeI CTNAG 6 cut(s) 74, 156, 196, 324, 508, 1680
DpnI GATC 5 cut(s) 312, 351, 1407, 1564, 1656
DpnII GATC 5 cut(s) 310, 349, 1405, 1562, 1654
Eam1104I CTCTTC 3 cut(s) 157, 445, 644
EarI CTCTTC 3 cut(s) 157, 445, 644
Eco130I CCWWGG 1 cut(s) 801
Eco24I GRGCYC 1 cut(s) 134
Eco31I GGTCTC 1 cut(s) 511
Eco47I GGWCC 3 cut(s) 392, 742, 1319
Eco57I CTGAAG 1 cut(s) 1194
Eco81I CCTNAGG 1 cut(s) 324
EcoRI GAATTC 1 cut(s) 1161
EcoRII CCWGG 2 cut(s) 288, 744
EcoT14I CCWWGG 1 cut(s) 801
EcoT38I GRGCYC 1 cut(s) 134
ErhI CCWWGG 1 cut(s) 801
Esp3I CGTCTC 1 cut(s) 1226
FalI AAGNNNNNCTT 2 cut(s) 153, 185
FbaI TGATCA 1 cut(s) 310
FblI GTMKAC 2 cut(s) 852, 861
Fnu4HI GCNGC 3 cut(s) 536, 1402, 1674
FokI GGATG 6 cut(s) 16, 70, 434, 616, 1239, 1637
FriOI GRGCYC 1 cut(s) 134
Fsp4HI GCNGC 3 cut(s) 536, 1402, 1674
FspBI CTAG 3 cut(s) 908, 1073, 1652
GluI GCNGC 3 cut(s) 536, 1402, 1674
GsuI CTGGAG 2 cut(s) 245, 848
HaeIII GGCC 2 cut(s) 132, 294
HapII CCGG 1 cut(s) 125
HgaI GACGC 1 cut(s) 101
HindIII AAGCTT 1 cut(s) 671
HinfI GANTC 7 cut(s) 558, 626, 806, 812, 917, 1598, 1648
HpaII CCGG 1 cut(s) 125
HphI GGTGA 7 cut(s) 347, 621, 1014, 1103, 1241, 1249, 1354
Hpy166II GTNNAC 4 cut(s) 266, 853, 862, 1322
Hpy188III TCNNGA 6 cut(s) 106, 385, 1645, 1652, 1658, 1700
Hpy8I GTNNAC 4 cut(s) 266, 853, 862, 1322
Hpy99I CGWCG 1 cut(s) 478
HpyAV CCTTC 4 cut(s) 44, 251, 1347, 1553
HpyCH4III ACNGT 9 cut(s) 207, 319, 378, 466, 633, 859, 878, 1120, 1237
HpyCH4IV ACGT 3 cut(s) 476, 770, 1324
HpyF10VI GCNNNNNNNGC 4 cut(s) 118, 1008, 1309, 1517
HpyF3I CTNAG 6 cut(s) 74, 156, 196, 324, 508, 1680
HpySE526I ACGT 3 cut(s) 476, 770, 1324
Ksp22I TGATCA 1 cut(s) 310
Kzo9I GATC 5 cut(s) 310, 349, 1405, 1562, 1654
LguI GCTCTTC 2 cut(s) 445, 644
LmnI GCTCC 2 cut(s) 226, 829
Lsp1109I GCAGC 3 cut(s) 522, 1388, 1660
LweI GCATC 4 cut(s) 285, 466, 1028, 1474
MabI ACCWGGT 1 cut(s) 744
MaeI CTAG 3 cut(s) 908, 1073, 1652
MaeII ACGT 3 cut(s) 476, 770, 1324
MaeIII GTNAC 2 cut(s) 466, 540
MalI GATC 5 cut(s) 312, 351, 1407, 1564, 1656
MboI GATC 5 cut(s) 310, 349, 1405, 1562, 1654
MboII GAAGA 8 cut(s) 144, 161, 290, 350, 432, 631, 635, 1187
MhlI GDGCHC 2 cut(s) 134, 231
MluCI AATT 8 cut(s) 329, 547, 692, 1033, 1141, 1161, 1491, 1711
MlyI GAGTC 2 cut(s) 806, 1642
MmeI TCCRAC 1 cut(s) 730
MroXI GAANNNNTTC 1 cut(s) 1098
MseI TTAA 1 cut(s) 585
MspI CCGG 1 cut(s) 125
MspR9I CCNGG 2 cut(s) 290, 746
Mva1269I GAATGC 2 cut(s) 948, 969
MvaI CCWGG 2 cut(s) 290, 746
MwoI GCNNNNNNNGC 4 cut(s) 118, 1008, 1309, 1517
NdeII GATC 5 cut(s) 310, 349, 1405, 1562, 1654
NlaIV GGNNCC 1 cut(s) 132
NmuCI GTSAC 1 cut(s) 466
NspI RCATGY 4 cut(s) 235, 488, 727, 1640
NspV TTCGAA 1 cut(s) 172
PaeI GCATGC 1 cut(s) 1640
PagI TCATGA 1 cut(s) 1657
PasI CCCWGGG 1 cut(s) 289
PciI ACATGT 2 cut(s) 231, 723
PciSI GCTCTTC 2 cut(s) 445, 644
PctI GAATGC 2 cut(s) 948, 969
PdmI GAANNNNTTC 1 cut(s) 1098
PfeI GAWTC 5 cut(s) 558, 626, 806, 917, 1598
PflFI GACNNNGTC 1 cut(s) 746
PflMI CCANNNNNTGG 1 cut(s) 802
PinAI ACCGGT 1 cut(s) 124
PkrI GCNGC 3 cut(s) 537, 1403, 1675
PleI GAGTC 2 cut(s) 806, 1642
PpsI GAGTC 2 cut(s) 806, 1642
PscI ACATGT 2 cut(s) 231, 723
Psp6I CCWGG 2 cut(s) 288, 744
PspGI CCWGG 2 cut(s) 288, 744
PspN4I GGNNCC 1 cut(s) 132
PspOMI GGGCCC 1 cut(s) 130
PspPI GGNCC 6 cut(s) 130, 131, 292, 392, 742, 1319
PsrI GAACNNNNNNTAC 2 cut(s) 1259, 1291
PstNI CAGNNNCTG 1 cut(s) 876
PsyI GACNNNGTC 1 cut(s) 746
RsaI GTAC 9 cut(s) 222, 267, 375, 688, 935, 1150, 1274, 1331, 1415
RsaNI GTAC 9 cut(s) 221, 266, 374, 687, 934, 1149, 1273, 1330, 1414
SapI GCTCTTC 2 cut(s) 445, 644
SaqAI TTAA 1 cut(s) 585
SatI GCNGC 3 cut(s) 536, 1402, 1674
Sau3AI GATC 5 cut(s) 310, 349, 1405, 1562, 1654
Sau96I GGNCC 6 cut(s) 130, 131, 292, 392, 742, 1319
ScaI AGTACT 1 cut(s) 1274
SchI GAGTC 2 cut(s) 806, 1642
ScrFI CCNGG 2 cut(s) 290, 746
SduI GDGCHC 2 cut(s) 134, 231
SexAI ACCWGGT 1 cut(s) 744
SfaNI GCATC 4 cut(s) 285, 466, 1028, 1474
SfcI CTRYAG 1 cut(s) 763
SfuI TTCGAA 1 cut(s) 172
SinI GGWCC 3 cut(s) 392, 742, 1319
SmlI CTYRAG 1 cut(s) 598
SmoI CTYRAG 1 cut(s) 598
SphI GCATGC 1 cut(s) 1640
Sse9I AATT 8 cut(s) 329, 547, 692, 1033, 1141, 1161, 1491, 1711
SsiI CCGC 4 cut(s) 846, 1011, 1025, 1089
SspMI CTAG 3 cut(s) 908, 1073, 1652
StyD4I CCNGG 2 cut(s) 288, 744
StyI CCWWGG 1 cut(s) 801
TaaI ACNGT 9 cut(s) 207, 319, 378, 466, 633, 859, 878, 1120, 1237
TaiI ACGT 3 cut(s) 479, 773, 1327
TaqI TCGA 3 cut(s) 172, 301, 473
TasI AATT 8 cut(s) 329, 547, 692, 1033, 1141, 1161, 1491, 1711
TatI WGTACW 4 cut(s) 220, 265, 1148, 1272
TfiI GAWTC 5 cut(s) 558, 626, 806, 917, 1598
Tru1I TTAA 1 cut(s) 585
Tru9I TTAA 1 cut(s) 585
TscAI CASTG 5 cut(s) 212, 324, 415, 881, 1009
TseFI GTSAC 1 cut(s) 466
TseI GCWGC 3 cut(s) 535, 1401, 1673
Tsp45I GTSAC 1 cut(s) 466
TspDTI ATGAA 8 cut(s) 270, 620, 636, 909, 1280, 1548, 1593, 1674
TspGWI ACGGA 1 cut(s) 704
TspRI CASTG 5 cut(s) 212, 324, 415, 881, 1009
Tth111I GACNNNGTC 1 cut(s) 746
Van91I CCANNNNNTGG 1 cut(s) 802
VpaK11BI GGWCC 3 cut(s) 392, 742, 1319
XapI RAATTY 4 cut(s) 329, 547, 1161, 1711
XbaI TCTAGA 1 cut(s) 1651
XceI RCATGY 4 cut(s) 235, 488, 727, 1640
XcmI CCANNNNNNNNNTGG 1 cut(s) 1461
XmiI GTMKAC 2 cut(s) 852, 861
XmnI GAANNNNTTC 1 cut(s) 1098
XspI CTAG 3 cut(s) 908, 1073, 1652
ZrmI AGTACT 1 cut(s) 1274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.