Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8128438.1

Orthogroup ID

OG0006788

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 410

Gene Structure 409 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8128438.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 409 bp

atgcaggttatttctcttgaccataaatttgcggagtatgtaaagttggaatctataagtgctgaaagaaaaaaggagattgatgatttagttgcttctatgactgatatccccaaagccccttgggatgagggagtctgcaaagtatgtggcattgataaagatgacgacagcgtactgttgtgtgatacttgtgatgctgagtatcatacttactgtttgattcctcctcttgcaaggatcccaaagggaaattggtattgtccatcttgtgttgttggcaaaaacatggttcaagacgcgtcaggacatcctcaggtcattagccgacgccgtggtaaaaattgtcacggagaagttacacgcgtttacttggagtcactcacgcatttagcaactaaaatggaag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000166 GO:0000228 GO:0000785 GO:0000790 GO:0000792 GO:0001763 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003824 GO:0004402 GO:0004842 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005694 GO:0005720 GO:0005911 GO:0006139 GO:0006259 GO:0006325 GO:0006355 GO:0006464 GO:0006473 GO:0006475 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008080 GO:0008150 GO:0008152 GO:0008327 GO:0009314 GO:0009416 GO:0009506 GO:0009628 GO:0009648 GO:0009653 GO:0009791 GO:0009889 GO:0009987 GO:0010016 GO:0010216 GO:0010223 GO:0010228 GO:0010346 GO:0010468 GO:0010556 GO:0016043 GO:0016407 GO:0016410 GO:0016567 GO:0016569 GO:0016570 GO:0016573 GO:0016740 GO:0016746 GO:0016747 GO:0018193 GO:0018205 GO:0018393 GO:0018394 GO:0019219 GO:0019222 GO:0019538 GO:0019787 GO:0022414 GO:0030054 GO:0031323 GO:0031326 GO:0031935 GO:0031974 GO:0031981 GO:0032446 GO:0032501 GO:0032502 GO:0033043 GO:0033044 GO:0034212 GO:0034641 GO:0036094 GO:0036211 GO:0042393 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043412 GO:0043543 GO:0043565 GO:0043966 GO:0043967 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0048367 GO:0048573 GO:0048608 GO:0048646 GO:0048731 GO:0048856 GO:0050789 GO:0050794 GO:0050896 GO:0051052 GO:0051128 GO:0051171 GO:0051252 GO:0051276 GO:0055044 GO:0060255 GO:0060968 GO:0061458 GO:0061630 GO:0061659 GO:0061733 GO:0065007 GO:0070013 GO:0070647 GO:0071704 GO:0071840 GO:0080090 GO:0090304 GO:0090308 GO:0097159 GO:0140096 GO:1901265 GO:1901360 GO:1901363 GO:1901564 GO:1902275 GO:1903506 GO:1905393 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Bromodomain DDT FYRC MBD PHD WHIM1 WSD

Protein Analysis

136

Amino Acids

15.27

Weight (kDa)

5.72

Isoelectric Point (pI)

32.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006788)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77250
fragaria_vesca	FvH4_2g28030 FvH4_2g28030
malus_domestica	MD08G1160700.v1.1 MD15G1132400.v1.1
prunus_persica	Prupe.1G487600_v2.0.a1 Prupe.1G487600_v2.0.a1 Prupe.1G487600_v2.0.a1 Prupe.1G487600_v2.0.a1 Prupe.1G487600_v2.0.a1 Prupe.1G487600_v2.0.a1
pyrus_communis	pycom08g13450 pycom15g11950
rosa_chinensis	RchiOBHm_Chr6g0296911
rosa_laevigata	RLG00000011647
rosa_multiflora	Rmu_co8128438.1_g000001 Rmu_sc0007272.1_g000001 Rmu_sc0018303.1_g000003
rosa_roxburghii	Rroxscaffold_7G00171040
rosa_rugosa	Rorug06G0267500 Rorug06G0267600
rosa_samantha	Rh6AG378200 Rh6BG386200 Rh6CG391600 Rh6DG378900
rosa_wichuraiana	Rw6G033060

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	302, 366
AciI	CCGC	1 cut(s)	32
AclWI	GGATC	2 cut(s)	235, 248
AcsI	RAATTY	1 cut(s)	26
AcyI	GRCGYC	1 cut(s)	331
AfaI	GTAC	1 cut(s)	177
AflIII	ACRYGT	2 cut(s)	300, 364
AgsI	TTSAA	1 cut(s)	296
AlwI	GGATC	2 cut(s)	235, 248
ApoI	RAATTY	1 cut(s)	26
ArsI	GACNNNNNNTTYG	2 cut(s)	11, 43
AxyI	CCTNAGG	1 cut(s)	315
BamHI	GGATCC	1 cut(s)	240
BccI	CCATC	1 cut(s)	274
BceAI	ACGGC	1 cut(s)	318
BmiI	GGNNCC	1 cut(s)	242
BmsI	GCATC	1 cut(s)	187
BsaHI	GRCGYC	1 cut(s)	331
BsaJI	CCNNGG	2 cut(s)	122, 334
Bse21I	CCTNAGG	1 cut(s)	315
BseDI	CCNNGG	2 cut(s)	122, 334
BseGI	GGATG	2 cut(s)	133, 310
BseMII	CTCAG	2 cut(s)	192, 329
BseRI	GAGGAG	1 cut(s)	219
Bsh1236I	CGCG	2 cut(s)	302, 366
Bsp143I	GATC	1 cut(s)	240
BspACI	CCGC	1 cut(s)	32
BspCNI	CTCAG	2 cut(s)	193, 328
BspFNI	CGCG	2 cut(s)	302, 366
BspLI	GGNNCC	1 cut(s)	242
BspPI	GGATC	2 cut(s)	235, 248
BssECI	CCNNGG	2 cut(s)	122, 334
BssMI	GATC	1 cut(s)	240
BssNI	GRCGYC	1 cut(s)	331
BssT1I	CCWWGG	1 cut(s)	122
Bst4CI	ACNGT	2 cut(s)	180, 218
BstACI	GRCGYC	1 cut(s)	331
BstDEI	CTNAG	2 cut(s)	201, 315
BstDSI	CCRYGG	1 cut(s)	334
BstF5I	GGATG	2 cut(s)	133, 310
BstFNI	CGCG	2 cut(s)	302, 366
BstKTI	GATC	1 cut(s)	243
BstMBI	GATC	1 cut(s)	240
BstUI	CGCG	2 cut(s)	302, 366
BstX2I	RGATCY	1 cut(s)	240
BstYI	RGATCY	1 cut(s)	240
Bsu36I	CCTNAGG	1 cut(s)	315
BtgI	CCRYGG	1 cut(s)	334
BtsCI	GGATG	2 cut(s)	133, 310
CseI	GACGC	3 cut(s)	291, 308, 339
Csp6I	GTAC	1 cut(s)	176
CspCI	CAANNNNNGTGG	2 cut(s)	130, 165
CviAII	CATG	1 cut(s)	289
CviJI	RGCY	2 cut(s)	119, 327
CviKI_1	RGCY	2 cut(s)	119, 327
CviQI	GTAC	1 cut(s)	176
DdeI	CTNAG	2 cut(s)	201, 315
DpnI	GATC	1 cut(s)	242
DpnII	GATC	1 cut(s)	240
Eco130I	CCWWGG	1 cut(s)	122
Eco32I	GATATC	1 cut(s)	109
Eco81I	CCTNAGG	1 cut(s)	315
EcoRV	GATATC	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	122
ErhI	CCWWGG	1 cut(s)	122
FaeI	CATG	1 cut(s)	292
FaiI	YATR	7 cut(s)	24, 39, 56, 101, 148, 210, 290
FatI	CATG	1 cut(s)	288
FokI	GGATG	2 cut(s)	140, 297
HgaI	GACGC	3 cut(s)	291, 308, 339
Hin1I	GRCGYC	1 cut(s)	331
Hin1II	CATG	1 cut(s)	292
HinfI	GANTC	4 cut(s)	50, 135, 223, 377
Hpy166II	GTNNAC	1 cut(s)	370
Hpy188III	TCNNGA	3 cut(s)	17, 296, 306
Hpy8I	GTNNAC	1 cut(s)	370
Hpy99I	CGWCG	1 cut(s)	333
HpyCH4III	ACNGT	2 cut(s)	180, 218
HpyCH4V	TGCA	3 cut(s)	4, 141, 236
HpyF3I	CTNAG	2 cut(s)	201, 315
Hsp92I	GRCGYC	1 cut(s)	331
Hsp92II	CATG	1 cut(s)	292
Kzo9I	GATC	1 cut(s)	240
LpnPI	CCDG	2 cut(s)	291, 302
LweI	GCATC	1 cut(s)	187
MaeIII	GTNAC	3 cut(s)	347, 358, 378
MalI	GATC	1 cut(s)	242
MboI	GATC	1 cut(s)	240
MflI	RGATCY	1 cut(s)	240
MluCI	AATT	3 cut(s)	26, 253, 343
MluI	ACGCGT	2 cut(s)	300, 364
MlyI	GAGTC	2 cut(s)	144, 386
MmeI	TCCRAC	1 cut(s)	27
MnlI	CCTC	4 cut(s)	124, 237, 240, 324
MvnI	CGCG	2 cut(s)	302, 366
NdeII	GATC	1 cut(s)	240
NlaIII	CATG	1 cut(s)	292
NlaIV	GGNNCC	1 cut(s)	242
NmuCI	GTSAC	2 cut(s)	347, 378
PfeI	GAWTC	2 cut(s)	50, 223
PleI	GAGTC	2 cut(s)	143, 385
PpsI	GAGTC	2 cut(s)	143, 385
PspN4I	GGNNCC	1 cut(s)	242
PsuI	RGATCY	1 cut(s)	240
RsaI	GTAC	1 cut(s)	177
RsaNI	GTAC	1 cut(s)	176
Sau3AI	GATC	1 cut(s)	240
SchI	GAGTC	2 cut(s)	144, 386
SetI	ASST	2 cut(s)	9, 321
SfaNI	GCATC	1 cut(s)	187
Sse9I	AATT	3 cut(s)	26, 253, 343
SsiI	CCGC	1 cut(s)	32
StyI	CCWWGG	1 cut(s)	122
TaaI	ACNGT	2 cut(s)	180, 218
TasI	AATT	3 cut(s)	26, 253, 343
TfiI	GAWTC	2 cut(s)	50, 223
TseFI	GTSAC	2 cut(s)	347, 378
Tsp45I	GTSAC	2 cut(s)	347, 378
TspGWI	ACGGA	1 cut(s)	366
XapI	RAATTY	1 cut(s)	26
XcmI	CCANNNNNNNNNTGG	1 cut(s)	252

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.