Prupe.1G487600_v2.0.a1

PHD-finger

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
40615975 .. 40621454
5480 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G487600.4

Sequence Viewer

Length: 2049 bp
ATGGAACCTGAAGAAGGAAAAAGCAATGGTGGTATTACGGTGTGCACTGAGAAAGTTCAATCCTTGACGAGTGAAGCCAAATGTGGTAGTACGGAGTGCACTGAGAAAGTTCAATCCTTGACAAGTGAAGCCAATGGTGGTAATACGGAGTGCACTGAGAAAGTTCAATCCTGGAAGAGTGAAGCCAATGGTGGTAGTACGGAGTGCACTGAGAAAGTTCAAACCTGGAAGAGTGAAGCCAATGATGGTAGTACGGAATGCACTCACAAAGCTCAATGCTTGAAGAGTGAAGCCAATGGATTTGAATTTAGGGTGTGTAAAAACTTTGCCGAAGGCCGCTCAGATGCAAGTGAGGTTGTTCGGACTTACAAGAGGCGGAGGCGTGCAGGGTCAAGTTGGGATAGCAGGTCACAAGAATATGGGGGAGCTGATGTAGAATCTTCGAGCCAATTGGCAGACCAGCGTCTAAAGGAACCTGTGGACACAGCAATACAGAATAACTCTTGTGAGCAAGTCCATCTTCAAACGAATAGTTCAGATGCTTGCTCAGATAGGCACTGGAGAAATGCTGTACTGGACAGCATGTATCAGTCGTTAGGTGATGATGAAGGTGGTGTACAAGTGTGCATCCGAGAAGCAATTGTACATTTTCGAGACATTGATCATACCACAAGAGTTAAGGAATCTGGTGATAATGATGCGGATAGGCATCAATGTTTTTTTCCAACGCGGTCTATCTTGAATGGACCTCATAGTGCAGCCAATGGGCAAGCTGGTGTTATATTGAATGGATCTTCAAATAAAACAAACTATCCTACAGTTACTGCAATGTGTCAGCGTGCTTTTTTTAATGTTTTAGTTTCAGAAAATTTTGCTTCATTGTGCAAACTGCTGTTGGAAAATTTTCAAGGAATCAAGGCTGACAGCATTTTCGACCTTAATCTCATAAACTCAAGGATGAAAAAGGGGGATTATGAACATTCGCCTATGCTATTCTCACATGATATGCAACAGATATGGAGAAAGCTTCAAGGGATTGGTACTAACTTGATTTCTCTTGCAAAAAGCCTCTCGGACATGTCAAGGAGTTCTTACAAAGAACAGGTGGGAGGTTCAGTCCGAAATACATTTGAAGGTGGAAAAGATGAGTTCTACGCCTTCGAATCTGACTTTCACACTAAACTGGAGCAAACAGAGGATTGTGCTGTGCACAGTGTATATACTTGCATGCATTGTGGAGGCAAGGCAGATGGGAAGGATTGTCTAGTATGTGATTCATGTGAGGACATGTACCATATCTCCTGCATTCAGCCTGCTGTCAAAGAGATTCCTCTAAAAAGTTGGTATTGTTTGAGTTGCACTGCCAGTGGCGTTCGATCATCCCATGAGAACTGTGTTGTGTGTGAGAAGTTGAATGTGCCCAAGACTCTAGTTGATGGAGTTGGAGGTGAAAGTGTTTCTACAGATGAAGAAACAGTCAATGAGATGGGAGAGAATTCAAATTTTAATACAGATGATGGAATCCAACCTTCGGAAGCGAGCAAAGACTTGAACATCTGCAAAACTTGTGGAATGGAGGTAGAAAAAAGTGACAAGTTGAAGATATGTGGTCATCCATACTGCCCGAAGAAATACTACCATGAGAGGTGTCTGACAACTAAGGAGTTAAAATCATATGGTCCCTGTTGGTACTGCTATTCTTGTCTGTGCAGAGCTTGTCTCACTGATCGAGACGATGATATAATTGTTCTTTGTGATGGCTGTGATCATGGGTACCACATCTATTGTATGGACCCACCACGCATCGCCATTCCAAGCGGGAAATGGTTTTGCAGAAAATGTCGTGCAGCAATTCAGGTCATACGCAGGACAAGAAAGGCTCATGATAAGAATGAAAAGAAACAGAAAAAGAACAGTGAAGGATCAAGGAAGTTGAATGAAAAACGAGCTGACAGGGAATCAGGACAAGGTAGAGGGGGAATGGAGTTGCTTGTATATGCAGTCAAGACTCTAGATCATGAAGAAGATATGATGAGTAAAAAAGAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

683

Amino Acids

76.04

Weight (kDa)

5.81

Isoelectric Point (pI)

51.23

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 396
Acc65I GGTACC 1 cut(s) 1773
AccB1I GGYRCC 1 cut(s) 1773
AccBSI CCGCTC 1 cut(s) 339
AccII CGCG 1 cut(s) 730
AciI CCGC 5 cut(s) 337, 376, 701, 730, 1818
AclWI GGATC 2 cut(s) 799, 1930
AcsI RAATTY 5 cut(s) 305, 868, 901, 1495, 1501
AcuI CTGAAG 1 cut(s) 30
AfiI CCNNNNNNNGG 2 cut(s) 14, 1531
AflIII ACRYGT 2 cut(s) 1077, 1287
AjnI CCWGG 2 cut(s) 170, 224
AluBI AGCT 6 cut(s) 272, 428, 773, 1027, 1715, 1949
AluI AGCT 6 cut(s) 272, 428, 773, 1027, 1715, 1949
Alw21I GWGCWC 5 cut(s) 47, 101, 155, 209, 1212
Alw26I GTCTC 3 cut(s) 648, 1724, 1725
Alw44I GTGCAC 5 cut(s) 43, 97, 151, 205, 1208
AlwI GGATC 2 cut(s) 799, 1930
AlwNI CAGNNNCTG 1 cut(s) 824
AoxI GGCC 1 cut(s) 334
ApaLI GTGCAC 5 cut(s) 43, 97, 151, 205, 1208
ApeKI GCWGC 2 cut(s) 758, 1847
ApoI RAATTY 5 cut(s) 305, 868, 901, 1495, 1501
ArsI GACNNNNNNTTYG 2 cut(s) 914, 946
Asp700I GAANNNNTTC 1 cut(s) 903
Asp718I GGTACC 1 cut(s) 1773
AspS9I GGNCC 3 cut(s) 746, 1679, 1792
AsuHPI GGTGA 3 cut(s) 611, 701, 1460
AsuII TTCGAA 1 cut(s) 1161
AvaII GGWCC 3 cut(s) 746, 1679, 1792
BaeGI GKGCMC 6 cut(s) 47, 101, 155, 209, 1212, 1422
BanI GGYRCC 1 cut(s) 1773
BarI GAAGNNNNNNTAC 6 cut(s) 600, 627, 632, 659, 1619, 1651
Bbv12I GWGCWC 5 cut(s) 47, 101, 155, 209, 1212
BbvI GCAGC 2 cut(s) 770, 1859
BccI CCATC 7 cut(s) 239, 525, 1244, 1430, 1480, 1511, 1751
BciT130I CCWGG 2 cut(s) 172, 226
BclI TGATCA 2 cut(s) 661, 1765
BcoDI GTCTC 3 cut(s) 648, 1724, 1725
BfaI CTAG 3 cut(s) 1265, 1430, 2012
BfmI CTRYAG 2 cut(s) 816, 1461
BfuAI ACCTGC 1 cut(s) 396
BisI GCNGC 3 cut(s) 337, 759, 1848
BlsI GCNGC 3 cut(s) 338, 760, 1849
Bme1390I CCNGG 2 cut(s) 172, 226
Bme18I GGWCC 3 cut(s) 746, 1679, 1792
BmgT120I GGNCC 3 cut(s) 746, 1679, 1792
BmiI GGNNCC 5 cut(s) 6, 474, 1681, 1775, 1794
BmrFI CCNGG 2 cut(s) 172, 226
BmsI GCATC 6 cut(s) 334, 529, 636, 688, 718, 1812
BoxI GACNNNNGTC 1 cut(s) 462
BplI GAGNNNNNCTC 2 cut(s) 1704, 1736
BpmI CTGGAG 2 cut(s) 580, 1205
Bpu14I TTCGAA 1 cut(s) 1161
BpuEI CTTGAG 1 cut(s) 937
BsaBI GATNNNNATC 1 cut(s) 708
BsaXI ACNNNNNCTCC 6 cut(s) 417, 447, 1101, 1131, 1283, 1313
Bsc4I CCNNNNNNNGG 2 cut(s) 14, 1531
Bse1I ACTGG 4 cut(s) 563, 579, 1188, 1365
Bse3DI GCAATG 2 cut(s) 31, 834
Bse8I GATNNNNATC 1 cut(s) 708
BseBI CCWGG 2 cut(s) 172, 226
BseGI GGATG 4 cut(s) 627, 963, 1379, 1612
BseJI GATNNNNATC 1 cut(s) 708
BseLI CCNNNNNNNGG 2 cut(s) 14, 1531
BseMI GCAATG 2 cut(s) 31, 834
BseMII CTCAG 6 cut(s) 39, 93, 147, 201, 354, 561
BseNI ACTGG 4 cut(s) 563, 579, 1188, 1365
BseSI GKGCMC 6 cut(s) 47, 101, 155, 209, 1212, 1422
BseXI GCAGC 2 cut(s) 770, 1859
BsgI GTGCAG 4 cut(s) 405, 777, 1729, 1866
Bsh1236I CGCG 1 cut(s) 730
BshFI GGCC 1 cut(s) 336
BshNI GGYRCC 1 cut(s) 1773
BsiHKAI GWGCWC 5 cut(s) 47, 101, 155, 209, 1212
BslFI GGGAC 1 cut(s) 1665
BslI CCNNNNNNNGG 2 cut(s) 14, 1531
BsmAI GTCTC 3 cut(s) 648, 1724, 1725
BsmBI CGTCTC 1 cut(s) 1725
BsmFI GGGAC 1 cut(s) 1665
BsmI GAATGC 2 cut(s) 263, 1305
BsnI GGCC 1 cut(s) 336
Bsp119I TTCGAA 1 cut(s) 1161
Bsp1286I GDGCHC 6 cut(s) 47, 101, 155, 209, 1212, 1422
Bsp1407I TGTACA 2 cut(s) 616, 643
Bsp143I GATC 7 cut(s) 661, 791, 1376, 1726, 1765, 1922, 2014
BspACI CCGC 5 cut(s) 337, 376, 701, 730, 1818
BspANI GGCC 1 cut(s) 336
BspCNI CTCAG 6 cut(s) 40, 94, 148, 202, 353, 560
BspFNI CGCG 1 cut(s) 730
BspHI TCATGA 2 cut(s) 1882, 2017
BspLI GGNNCC 5 cut(s) 6, 474, 1681, 1775, 1794
BspMI ACCTGC 1 cut(s) 396
BspPI GGATC 2 cut(s) 799, 1930
BspT104I TTCGAA 1 cut(s) 1161
BspT107I GGYRCC 1 cut(s) 1773
BsrBI CCGCTC 1 cut(s) 339
BsrDI GCAATG 2 cut(s) 31, 834
BsrGI TGTACA 2 cut(s) 616, 643
BsrI ACTGG 4 cut(s) 563, 579, 1188, 1365
BssMI GATC 7 cut(s) 661, 791, 1376, 1726, 1765, 1922, 2014
Bst2UI CCWGG 2 cut(s) 172, 226
Bst4CI ACNGT 6 cut(s) 40, 820, 1214, 1394, 1477, 1916
Bst6I CTCTTC 3 cut(s) 170, 224, 278
BstAUI TGTACA 2 cut(s) 616, 643
BstBI TTCGAA 1 cut(s) 1161
BstC8I GCNNGC 7 cut(s) 384, 544, 771, 840, 1229, 1314, 1540
BstDEI CTNAG 7 cut(s) 48, 102, 156, 210, 340, 547, 1659
BstENI CCTNNNNNAGG 1 cut(s) 12
BstF5I GGATG 4 cut(s) 627, 963, 1379, 1612
BstFNI CGCG 1 cut(s) 730
BstKTI GATC 7 cut(s) 664, 794, 1379, 1729, 1768, 1925, 2017
BstMAI GTCTC 3 cut(s) 648, 1724, 1725
BstMBI GATC 7 cut(s) 661, 791, 1376, 1726, 1765, 1922, 2014
BstNI CCWGG 2 cut(s) 172, 226
BstNSI RCATGY 4 cut(s) 586, 1081, 1231, 1291
BstPAI GACNNNNGTC 1 cut(s) 462
BstSCI CCNGG 2 cut(s) 170, 224
BstSFI CTRYAG 2 cut(s) 816, 1461
BstSLI GKGCMC 6 cut(s) 47, 101, 155, 209, 1212, 1422
BstUI CGCG 1 cut(s) 730
BstV1I GCAGC 2 cut(s) 770, 1859
BstX2I RGATCY 1 cut(s) 791
BstYI RGATCY 1 cut(s) 791
BsuRI GGCC 1 cut(s) 336
BtgZI GCGATG 1 cut(s) 1789
BtsCI GGATG 4 cut(s) 627, 963, 1379, 1612
BtsI GCAGTG 1 cut(s) 1359
BveI ACCTGC 1 cut(s) 396
Cac8I GCNNGC 7 cut(s) 384, 544, 771, 840, 1229, 1314, 1540
CaiI CAGNNNCTG 1 cut(s) 824
CciI TCATGA 2 cut(s) 1882, 2017
Cfr13I GGNCC 3 cut(s) 746, 1679, 1792
CseI GACGC 1 cut(s) 452
CspCI CAANNNNNGTGG 4 cut(s) 1549, 1584, 1766, 1801
DdeI CTNAG 7 cut(s) 48, 102, 156, 210, 340, 547, 1659
DpnI GATC 7 cut(s) 663, 793, 1378, 1728, 1767, 1924, 2016
DpnII GATC 7 cut(s) 661, 791, 1376, 1726, 1765, 1922, 2014
Eam1104I CTCTTC 3 cut(s) 170, 224, 278
EarI CTCTTC 3 cut(s) 170, 224, 278
EciI GGCGGA 1 cut(s) 391
Eco47I GGWCC 3 cut(s) 746, 1679, 1792
Eco57I CTGAAG 1 cut(s) 30
EcoNI CCTNNNNNAGG 1 cut(s) 12
EcoRI GAATTC 1 cut(s) 1495
EcoRII CCWGG 2 cut(s) 170, 224
EcoT22I ATGCAT 1 cut(s) 1233
Esp3I CGTCTC 1 cut(s) 1725
FalI AAGNNNNNCTT 4 cut(s) 504, 536, 1075, 1107
FaqI GGGAC 1 cut(s) 1665
FauI CCCGC 1 cut(s) 1811
FauNDI CATATG 1 cut(s) 1675
FbaI TGATCA 2 cut(s) 661, 1765
Fnu4HI GCNGC 3 cut(s) 337, 759, 1848
FokI GGATG 4 cut(s) 614, 970, 1366, 1599
Fsp4HI GCNGC 3 cut(s) 337, 759, 1848
FspBI CTAG 3 cut(s) 1265, 1430, 2012
GluI GCNGC 3 cut(s) 337, 759, 1848
GsuI CTGGAG 2 cut(s) 580, 1205
HaeIII GGCC 1 cut(s) 336
HgaI GACGC 1 cut(s) 452
HindIII AAGCTT 1 cut(s) 1025
HphI GGTGA 3 cut(s) 611, 701, 1460
Hpy166II GTNNAC 7 cut(s) 45, 99, 153, 207, 481, 617, 1210
Hpy188III TCNNGA 8 cut(s) 653, 739, 1730, 1883, 1962, 2005, 2012, 2018
Hpy8I GTNNAC 7 cut(s) 45, 99, 153, 207, 481, 617, 1210
HpyAV CCTTC 8 cut(s) 8, 326, 602, 1127, 1168, 1249, 1539, 1913
HpyCH4III ACNGT 6 cut(s) 40, 820, 1214, 1394, 1477, 1916
HpyF3I CTNAG 7 cut(s) 48, 102, 156, 210, 340, 547, 1659
KpnI GGTACC 1 cut(s) 1777
Ksp22I TGATCA 2 cut(s) 661, 1765
Kzo9I GATC 7 cut(s) 661, 791, 1376, 1726, 1765, 1922, 2014
LmnI GCTCC 2 cut(s) 425, 1186
Lsp1109I GCAGC 2 cut(s) 770, 1859
LweI GCATC 6 cut(s) 334, 529, 636, 688, 718, 1812
MaeI CTAG 3 cut(s) 1265, 1430, 2012
MaeIII GTNAC 3 cut(s) 408, 820, 1589
MalI GATC 7 cut(s) 663, 793, 1378, 1728, 1767, 1924, 2016
MbiI CCGCTC 1 cut(s) 339
MboI GATC 7 cut(s) 661, 791, 1376, 1726, 1765, 1922, 2014
MfeI CAATTG 2 cut(s) 449, 639
MflI RGATCY 1 cut(s) 791
MhlI GDGCHC 6 cut(s) 47, 101, 155, 209, 1212, 1422
MluCI AATT 9 cut(s) 305, 449, 639, 868, 901, 1495, 1501, 1743, 1851
MlyI GAGTC 2 cut(s) 1420, 2002
MmeI TCCRAC 4 cut(s) 749, 876, 1423, 1549
Mph1103I ATGCAT 1 cut(s) 1233
MroXI GAANNNNTTC 1 cut(s) 903
MseI TTAA 5 cut(s) 678, 849, 939, 1506, 1667
MspR9I CCNGG 2 cut(s) 172, 226
MunI CAATTG 2 cut(s) 449, 639
Mva1269I GAATGC 2 cut(s) 263, 1305
MvaI CCWGG 2 cut(s) 172, 226
MvnI CGCG 1 cut(s) 730
NdeI CATATG 1 cut(s) 1675
NdeII GATC 7 cut(s) 661, 791, 1376, 1726, 1765, 1922, 2014
NlaIV GGNNCC 5 cut(s) 6, 474, 1681, 1775, 1794
NmuCI GTSAC 2 cut(s) 408, 1589
NsiI ATGCAT 1 cut(s) 1233
NspI RCATGY 4 cut(s) 586, 1081, 1231, 1291
NspV TTCGAA 1 cut(s) 1161
PaeI GCATGC 1 cut(s) 1231
PagI TCATGA 2 cut(s) 1882, 2017
PciI ACATGT 2 cut(s) 1077, 1287
PctI GAATGC 2 cut(s) 263, 1305
PdmI GAANNNNTTC 1 cut(s) 903
PfeI GAWTC 8 cut(s) 437, 683, 912, 1163, 1274, 1327, 1521, 1958
PfoI TCCNGGA 1 cut(s) 170
PkrI GCNGC 3 cut(s) 338, 760, 1849
PleI GAGTC 2 cut(s) 1420, 2002
PpsI GAGTC 2 cut(s) 1420, 2002
PscI ACATGT 2 cut(s) 1077, 1287
PshAI GACNNNNGTC 1 cut(s) 462
Psp6I CCWGG 2 cut(s) 170, 224
PspGI CCWGG 2 cut(s) 170, 224
PspN4I GGNNCC 5 cut(s) 6, 474, 1681, 1775, 1794
PspPI GGNCC 3 cut(s) 746, 1679, 1792
PstNI CAGNNNCTG 1 cut(s) 824
PsuI RGATCY 1 cut(s) 791
SaqAI TTAA 5 cut(s) 678, 849, 939, 1506, 1667
SatI GCNGC 3 cut(s) 337, 759, 1848
Sau3AI GATC 7 cut(s) 661, 791, 1376, 1726, 1765, 1922, 2014
Sau96I GGNCC 3 cut(s) 746, 1679, 1792
SchI GAGTC 2 cut(s) 1420, 2002
ScrFI CCNGG 2 cut(s) 172, 226
SduI GDGCHC 6 cut(s) 47, 101, 155, 209, 1212, 1422
SfaNI GCATC 6 cut(s) 334, 529, 636, 688, 718, 1812
SfcI CTRYAG 2 cut(s) 816, 1461
SfuI TTCGAA 1 cut(s) 1161
SinI GGWCC 3 cut(s) 746, 1679, 1792
SmlI CTYRAG 1 cut(s) 952
SmoI CTYRAG 1 cut(s) 952
SphI GCATGC 1 cut(s) 1231
Sse9I AATT 9 cut(s) 305, 449, 639, 868, 901, 1495, 1501, 1743, 1851
SsiI CCGC 5 cut(s) 337, 376, 701, 730, 1818
SspMI CTAG 3 cut(s) 1265, 1430, 2012
StyD4I CCNGG 2 cut(s) 170, 224
TaaI ACNGT 6 cut(s) 40, 820, 1214, 1394, 1477, 1916
TaqI TCGA 6 cut(s) 443, 652, 933, 1161, 1375, 1729
TasI AATT 9 cut(s) 305, 449, 639, 868, 901, 1495, 1501, 1743, 1851
TatI WGTACW 3 cut(s) 571, 616, 643
TauI GCSGC 1 cut(s) 339
TfiI GAWTC 8 cut(s) 437, 683, 912, 1163, 1274, 1327, 1521, 1958
Tru1I TTAA 5 cut(s) 678, 849, 939, 1506, 1667
Tru9I TTAA 5 cut(s) 678, 849, 939, 1506, 1667
TseFI GTSAC 2 cut(s) 408, 1589
TseI GCWGC 2 cut(s) 758, 1847
Tsp45I GTSAC 2 cut(s) 408, 1589
TspDTI ATGAA 9 cut(s) 621, 867, 974, 990, 1266, 1482, 1908, 1953, 2034
TspGWI ACGGA 4 cut(s) 107, 161, 215, 269
VneI GTGCAC 5 cut(s) 43, 97, 151, 205, 1208
VpaK11BI GGWCC 3 cut(s) 746, 1679, 1792
XagI CCTNNNNNAGG 1 cut(s) 12
XapI RAATTY 5 cut(s) 305, 868, 901, 1495, 1501
XbaI TCTAGA 1 cut(s) 2011
XceI RCATGY 4 cut(s) 586, 1081, 1231, 1291
XcmI CCANNNNNNNNNTGG 1 cut(s) 1821
XmnI GAANNNNTTC 1 cut(s) 903
XspI CTAG 3 cut(s) 1265, 1430, 2012
Zsp2I ATGCAT 1 cut(s) 1233
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.