PHD-finger
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G77250 |
| fragaria_vesca | FvH4_2g28030 FvH4_2g28030 |
| malus_domestica | MD08G1160700.v1.1 MD15G1132400.v1.1 |
| prunus_persica | Prupe.1G487600_v2.0.a1 Prupe.1G487600_v2.0.a1 Prupe.1G487600_v2.0.a1 Prupe.1G487600_v2.0.a1 Prupe.1G487600_v2.0.a1 Prupe.1G487600_v2.0.a1 |
| pyrus_communis | pycom08g13450 pycom15g11950 |
| rosa_chinensis | RchiOBHm_Chr6g0296911 |
| rosa_laevigata | RLG00000011647 |
| rosa_multiflora | Rmu_co8128438.1_g000001 Rmu_sc0007272.1_g000001 Rmu_sc0018303.1_g000003 |
| rosa_roxburghii | Rroxscaffold_7G00171040 |
| rosa_rugosa | Rorug06G0267500 Rorug06G0267600 |
| rosa_samantha | Rh6AG378200 Rh6BG386200 Rh6CG391600 Rh6DG378900 |
| rosa_wichuraiana | Rw6G033060 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc36I | ACCTGC | 1 cut(s) | 396 |
| Acc65I | GGTACC | 1 cut(s) | 1773 |
| AccB1I | GGYRCC | 1 cut(s) | 1773 |
| AccBSI | CCGCTC | 1 cut(s) | 339 |
| AccII | CGCG | 1 cut(s) | 730 |
| AciI | CCGC | 5 cut(s) | 337, 376, 701, 730, 1818 |
| AclWI | GGATC | 2 cut(s) | 799, 1930 |
| AcsI | RAATTY | 5 cut(s) | 305, 868, 901, 1495, 1501 |
| AcuI | CTGAAG | 1 cut(s) | 30 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 14, 1531 |
| AflIII | ACRYGT | 2 cut(s) | 1077, 1287 |
| AjnI | CCWGG | 2 cut(s) | 170, 224 |
| AluBI | AGCT | 6 cut(s) | 272, 428, 773, 1027, 1715, 1949 |
| AluI | AGCT | 6 cut(s) | 272, 428, 773, 1027, 1715, 1949 |
| Alw21I | GWGCWC | 5 cut(s) | 47, 101, 155, 209, 1212 |
| Alw26I | GTCTC | 3 cut(s) | 648, 1724, 1725 |
| Alw44I | GTGCAC | 5 cut(s) | 43, 97, 151, 205, 1208 |
| AlwI | GGATC | 2 cut(s) | 799, 1930 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 824 |
| AoxI | GGCC | 1 cut(s) | 334 |
| ApaLI | GTGCAC | 5 cut(s) | 43, 97, 151, 205, 1208 |
| ApeKI | GCWGC | 2 cut(s) | 758, 1847 |
| ApoI | RAATTY | 5 cut(s) | 305, 868, 901, 1495, 1501 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 914, 946 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 903 |
| Asp718I | GGTACC | 1 cut(s) | 1773 |
| AspS9I | GGNCC | 3 cut(s) | 746, 1679, 1792 |
| AsuHPI | GGTGA | 3 cut(s) | 611, 701, 1460 |
| AsuII | TTCGAA | 1 cut(s) | 1161 |
| AvaII | GGWCC | 3 cut(s) | 746, 1679, 1792 |
| BaeGI | GKGCMC | 6 cut(s) | 47, 101, 155, 209, 1212, 1422 |
| BanI | GGYRCC | 1 cut(s) | 1773 |
| BarI | GAAGNNNNNNTAC | 6 cut(s) | 600, 627, 632, 659, 1619, 1651 |
| Bbv12I | GWGCWC | 5 cut(s) | 47, 101, 155, 209, 1212 |
| BbvI | GCAGC | 2 cut(s) | 770, 1859 |
| BccI | CCATC | 7 cut(s) | 239, 525, 1244, 1430, 1480, 1511, 1751 |
| BciT130I | CCWGG | 2 cut(s) | 172, 226 |
| BclI | TGATCA | 2 cut(s) | 661, 1765 |
| BcoDI | GTCTC | 3 cut(s) | 648, 1724, 1725 |
| BfaI | CTAG | 3 cut(s) | 1265, 1430, 2012 |
| BfmI | CTRYAG | 2 cut(s) | 816, 1461 |
| BfuAI | ACCTGC | 1 cut(s) | 396 |
| BisI | GCNGC | 3 cut(s) | 337, 759, 1848 |
| BlsI | GCNGC | 3 cut(s) | 338, 760, 1849 |
| Bme1390I | CCNGG | 2 cut(s) | 172, 226 |
| Bme18I | GGWCC | 3 cut(s) | 746, 1679, 1792 |
| BmgT120I | GGNCC | 3 cut(s) | 746, 1679, 1792 |
| BmiI | GGNNCC | 5 cut(s) | 6, 474, 1681, 1775, 1794 |
| BmrFI | CCNGG | 2 cut(s) | 172, 226 |
| BmsI | GCATC | 6 cut(s) | 334, 529, 636, 688, 718, 1812 |
| BoxI | GACNNNNGTC | 1 cut(s) | 462 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1704, 1736 |
| BpmI | CTGGAG | 2 cut(s) | 580, 1205 |
| Bpu14I | TTCGAA | 1 cut(s) | 1161 |
| BpuEI | CTTGAG | 1 cut(s) | 937 |
| BsaBI | GATNNNNATC | 1 cut(s) | 708 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 417, 447, 1101, 1131, 1283, 1313 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 14, 1531 |
| Bse1I | ACTGG | 4 cut(s) | 563, 579, 1188, 1365 |
| Bse3DI | GCAATG | 2 cut(s) | 31, 834 |
| Bse8I | GATNNNNATC | 1 cut(s) | 708 |
| BseBI | CCWGG | 2 cut(s) | 172, 226 |
| BseGI | GGATG | 4 cut(s) | 627, 963, 1379, 1612 |
| BseJI | GATNNNNATC | 1 cut(s) | 708 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 14, 1531 |
| BseMI | GCAATG | 2 cut(s) | 31, 834 |
| BseMII | CTCAG | 6 cut(s) | 39, 93, 147, 201, 354, 561 |
| BseNI | ACTGG | 4 cut(s) | 563, 579, 1188, 1365 |
| BseSI | GKGCMC | 6 cut(s) | 47, 101, 155, 209, 1212, 1422 |
| BseXI | GCAGC | 2 cut(s) | 770, 1859 |
| BsgI | GTGCAG | 4 cut(s) | 405, 777, 1729, 1866 |
| Bsh1236I | CGCG | 1 cut(s) | 730 |
| BshFI | GGCC | 1 cut(s) | 336 |
| BshNI | GGYRCC | 1 cut(s) | 1773 |
| BsiHKAI | GWGCWC | 5 cut(s) | 47, 101, 155, 209, 1212 |
| BslFI | GGGAC | 1 cut(s) | 1665 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 14, 1531 |
| BsmAI | GTCTC | 3 cut(s) | 648, 1724, 1725 |
| BsmBI | CGTCTC | 1 cut(s) | 1725 |
| BsmFI | GGGAC | 1 cut(s) | 1665 |
| BsmI | GAATGC | 2 cut(s) | 263, 1305 |
| BsnI | GGCC | 1 cut(s) | 336 |
| Bsp119I | TTCGAA | 1 cut(s) | 1161 |
| Bsp1286I | GDGCHC | 6 cut(s) | 47, 101, 155, 209, 1212, 1422 |
| Bsp1407I | TGTACA | 2 cut(s) | 616, 643 |
| Bsp143I | GATC | 7 cut(s) | 661, 791, 1376, 1726, 1765, 1922, 2014 |
| BspACI | CCGC | 5 cut(s) | 337, 376, 701, 730, 1818 |
| BspANI | GGCC | 1 cut(s) | 336 |
| BspCNI | CTCAG | 6 cut(s) | 40, 94, 148, 202, 353, 560 |
| BspFNI | CGCG | 1 cut(s) | 730 |
| BspHI | TCATGA | 2 cut(s) | 1882, 2017 |
| BspLI | GGNNCC | 5 cut(s) | 6, 474, 1681, 1775, 1794 |
| BspMI | ACCTGC | 1 cut(s) | 396 |
| BspPI | GGATC | 2 cut(s) | 799, 1930 |
| BspT104I | TTCGAA | 1 cut(s) | 1161 |
| BspT107I | GGYRCC | 1 cut(s) | 1773 |
| BsrBI | CCGCTC | 1 cut(s) | 339 |
| BsrDI | GCAATG | 2 cut(s) | 31, 834 |
| BsrGI | TGTACA | 2 cut(s) | 616, 643 |
| BsrI | ACTGG | 4 cut(s) | 563, 579, 1188, 1365 |
| BssMI | GATC | 7 cut(s) | 661, 791, 1376, 1726, 1765, 1922, 2014 |
| Bst2UI | CCWGG | 2 cut(s) | 172, 226 |
| Bst4CI | ACNGT | 6 cut(s) | 40, 820, 1214, 1394, 1477, 1916 |
| Bst6I | CTCTTC | 3 cut(s) | 170, 224, 278 |
| BstAUI | TGTACA | 2 cut(s) | 616, 643 |
| BstBI | TTCGAA | 1 cut(s) | 1161 |
| BstC8I | GCNNGC | 7 cut(s) | 384, 544, 771, 840, 1229, 1314, 1540 |
| BstDEI | CTNAG | 7 cut(s) | 48, 102, 156, 210, 340, 547, 1659 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 12 |
| BstF5I | GGATG | 4 cut(s) | 627, 963, 1379, 1612 |
| BstFNI | CGCG | 1 cut(s) | 730 |
| BstKTI | GATC | 7 cut(s) | 664, 794, 1379, 1729, 1768, 1925, 2017 |
| BstMAI | GTCTC | 3 cut(s) | 648, 1724, 1725 |
| BstMBI | GATC | 7 cut(s) | 661, 791, 1376, 1726, 1765, 1922, 2014 |
| BstNI | CCWGG | 2 cut(s) | 172, 226 |
| BstNSI | RCATGY | 4 cut(s) | 586, 1081, 1231, 1291 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 462 |
| BstSCI | CCNGG | 2 cut(s) | 170, 224 |
| BstSFI | CTRYAG | 2 cut(s) | 816, 1461 |
| BstSLI | GKGCMC | 6 cut(s) | 47, 101, 155, 209, 1212, 1422 |
| BstUI | CGCG | 1 cut(s) | 730 |
| BstV1I | GCAGC | 2 cut(s) | 770, 1859 |
| BstX2I | RGATCY | 1 cut(s) | 791 |
| BstYI | RGATCY | 1 cut(s) | 791 |
| BsuRI | GGCC | 1 cut(s) | 336 |
| BtgZI | GCGATG | 1 cut(s) | 1789 |
| BtsCI | GGATG | 4 cut(s) | 627, 963, 1379, 1612 |
| BtsI | GCAGTG | 1 cut(s) | 1359 |
| BveI | ACCTGC | 1 cut(s) | 396 |
| Cac8I | GCNNGC | 7 cut(s) | 384, 544, 771, 840, 1229, 1314, 1540 |
| CaiI | CAGNNNCTG | 1 cut(s) | 824 |
| CciI | TCATGA | 2 cut(s) | 1882, 2017 |
| Cfr13I | GGNCC | 3 cut(s) | 746, 1679, 1792 |
| CseI | GACGC | 1 cut(s) | 452 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1549, 1584, 1766, 1801 |
| DdeI | CTNAG | 7 cut(s) | 48, 102, 156, 210, 340, 547, 1659 |
| DpnI | GATC | 7 cut(s) | 663, 793, 1378, 1728, 1767, 1924, 2016 |
| DpnII | GATC | 7 cut(s) | 661, 791, 1376, 1726, 1765, 1922, 2014 |
| Eam1104I | CTCTTC | 3 cut(s) | 170, 224, 278 |
| EarI | CTCTTC | 3 cut(s) | 170, 224, 278 |
| EciI | GGCGGA | 1 cut(s) | 391 |
| Eco47I | GGWCC | 3 cut(s) | 746, 1679, 1792 |
| Eco57I | CTGAAG | 1 cut(s) | 30 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 12 |
| EcoRI | GAATTC | 1 cut(s) | 1495 |
| EcoRII | CCWGG | 2 cut(s) | 170, 224 |
| EcoT22I | ATGCAT | 1 cut(s) | 1233 |
| Esp3I | CGTCTC | 1 cut(s) | 1725 |
| FalI | AAGNNNNNCTT | 4 cut(s) | 504, 536, 1075, 1107 |
| FaqI | GGGAC | 1 cut(s) | 1665 |
| FauI | CCCGC | 1 cut(s) | 1811 |
| FauNDI | CATATG | 1 cut(s) | 1675 |
| FbaI | TGATCA | 2 cut(s) | 661, 1765 |
| Fnu4HI | GCNGC | 3 cut(s) | 337, 759, 1848 |
| FokI | GGATG | 4 cut(s) | 614, 970, 1366, 1599 |
| Fsp4HI | GCNGC | 3 cut(s) | 337, 759, 1848 |
| FspBI | CTAG | 3 cut(s) | 1265, 1430, 2012 |
| GluI | GCNGC | 3 cut(s) | 337, 759, 1848 |
| GsuI | CTGGAG | 2 cut(s) | 580, 1205 |
| HaeIII | GGCC | 1 cut(s) | 336 |
| HgaI | GACGC | 1 cut(s) | 452 |
| HindIII | AAGCTT | 1 cut(s) | 1025 |
| HphI | GGTGA | 3 cut(s) | 611, 701, 1460 |
| Hpy166II | GTNNAC | 7 cut(s) | 45, 99, 153, 207, 481, 617, 1210 |
| Hpy188III | TCNNGA | 8 cut(s) | 653, 739, 1730, 1883, 1962, 2005, 2012, 2018 |
| Hpy8I | GTNNAC | 7 cut(s) | 45, 99, 153, 207, 481, 617, 1210 |
| HpyAV | CCTTC | 8 cut(s) | 8, 326, 602, 1127, 1168, 1249, 1539, 1913 |
| HpyCH4III | ACNGT | 6 cut(s) | 40, 820, 1214, 1394, 1477, 1916 |
| HpyF3I | CTNAG | 7 cut(s) | 48, 102, 156, 210, 340, 547, 1659 |
| KpnI | GGTACC | 1 cut(s) | 1777 |
| Ksp22I | TGATCA | 2 cut(s) | 661, 1765 |
| Kzo9I | GATC | 7 cut(s) | 661, 791, 1376, 1726, 1765, 1922, 2014 |
| LmnI | GCTCC | 2 cut(s) | 425, 1186 |
| Lsp1109I | GCAGC | 2 cut(s) | 770, 1859 |
| LweI | GCATC | 6 cut(s) | 334, 529, 636, 688, 718, 1812 |
| MaeI | CTAG | 3 cut(s) | 1265, 1430, 2012 |
| MaeIII | GTNAC | 3 cut(s) | 408, 820, 1589 |
| MalI | GATC | 7 cut(s) | 663, 793, 1378, 1728, 1767, 1924, 2016 |
| MbiI | CCGCTC | 1 cut(s) | 339 |
| MboI | GATC | 7 cut(s) | 661, 791, 1376, 1726, 1765, 1922, 2014 |
| MfeI | CAATTG | 2 cut(s) | 449, 639 |
| MflI | RGATCY | 1 cut(s) | 791 |
| MhlI | GDGCHC | 6 cut(s) | 47, 101, 155, 209, 1212, 1422 |
| MluCI | AATT | 9 cut(s) | 305, 449, 639, 868, 901, 1495, 1501, 1743, 1851 |
| MlyI | GAGTC | 2 cut(s) | 1420, 2002 |
| MmeI | TCCRAC | 4 cut(s) | 749, 876, 1423, 1549 |
| Mph1103I | ATGCAT | 1 cut(s) | 1233 |
| MroXI | GAANNNNTTC | 1 cut(s) | 903 |
| MseI | TTAA | 5 cut(s) | 678, 849, 939, 1506, 1667 |
| MspR9I | CCNGG | 2 cut(s) | 172, 226 |
| MunI | CAATTG | 2 cut(s) | 449, 639 |
| Mva1269I | GAATGC | 2 cut(s) | 263, 1305 |
| MvaI | CCWGG | 2 cut(s) | 172, 226 |
| MvnI | CGCG | 1 cut(s) | 730 |
| NdeI | CATATG | 1 cut(s) | 1675 |
| NdeII | GATC | 7 cut(s) | 661, 791, 1376, 1726, 1765, 1922, 2014 |
| NlaIV | GGNNCC | 5 cut(s) | 6, 474, 1681, 1775, 1794 |
| NmuCI | GTSAC | 2 cut(s) | 408, 1589 |
| NsiI | ATGCAT | 1 cut(s) | 1233 |
| NspI | RCATGY | 4 cut(s) | 586, 1081, 1231, 1291 |
| NspV | TTCGAA | 1 cut(s) | 1161 |
| PaeI | GCATGC | 1 cut(s) | 1231 |
| PagI | TCATGA | 2 cut(s) | 1882, 2017 |
| PciI | ACATGT | 2 cut(s) | 1077, 1287 |
| PctI | GAATGC | 2 cut(s) | 263, 1305 |
| PdmI | GAANNNNTTC | 1 cut(s) | 903 |
| PfeI | GAWTC | 8 cut(s) | 437, 683, 912, 1163, 1274, 1327, 1521, 1958 |
| PfoI | TCCNGGA | 1 cut(s) | 170 |
| PkrI | GCNGC | 3 cut(s) | 338, 760, 1849 |
| PleI | GAGTC | 2 cut(s) | 1420, 2002 |
| PpsI | GAGTC | 2 cut(s) | 1420, 2002 |
| PscI | ACATGT | 2 cut(s) | 1077, 1287 |
| PshAI | GACNNNNGTC | 1 cut(s) | 462 |
| Psp6I | CCWGG | 2 cut(s) | 170, 224 |
| PspGI | CCWGG | 2 cut(s) | 170, 224 |
| PspN4I | GGNNCC | 5 cut(s) | 6, 474, 1681, 1775, 1794 |
| PspPI | GGNCC | 3 cut(s) | 746, 1679, 1792 |
| PstNI | CAGNNNCTG | 1 cut(s) | 824 |
| PsuI | RGATCY | 1 cut(s) | 791 |
| SaqAI | TTAA | 5 cut(s) | 678, 849, 939, 1506, 1667 |
| SatI | GCNGC | 3 cut(s) | 337, 759, 1848 |
| Sau3AI | GATC | 7 cut(s) | 661, 791, 1376, 1726, 1765, 1922, 2014 |
| Sau96I | GGNCC | 3 cut(s) | 746, 1679, 1792 |
| SchI | GAGTC | 2 cut(s) | 1420, 2002 |
| ScrFI | CCNGG | 2 cut(s) | 172, 226 |
| SduI | GDGCHC | 6 cut(s) | 47, 101, 155, 209, 1212, 1422 |
| SfaNI | GCATC | 6 cut(s) | 334, 529, 636, 688, 718, 1812 |
| SfcI | CTRYAG | 2 cut(s) | 816, 1461 |
| SfuI | TTCGAA | 1 cut(s) | 1161 |
| SinI | GGWCC | 3 cut(s) | 746, 1679, 1792 |
| SmlI | CTYRAG | 1 cut(s) | 952 |
| SmoI | CTYRAG | 1 cut(s) | 952 |
| SphI | GCATGC | 1 cut(s) | 1231 |
| Sse9I | AATT | 9 cut(s) | 305, 449, 639, 868, 901, 1495, 1501, 1743, 1851 |
| SsiI | CCGC | 5 cut(s) | 337, 376, 701, 730, 1818 |
| SspMI | CTAG | 3 cut(s) | 1265, 1430, 2012 |
| StyD4I | CCNGG | 2 cut(s) | 170, 224 |
| TaaI | ACNGT | 6 cut(s) | 40, 820, 1214, 1394, 1477, 1916 |
| TaqI | TCGA | 6 cut(s) | 443, 652, 933, 1161, 1375, 1729 |
| TasI | AATT | 9 cut(s) | 305, 449, 639, 868, 901, 1495, 1501, 1743, 1851 |
| TatI | WGTACW | 3 cut(s) | 571, 616, 643 |
| TauI | GCSGC | 1 cut(s) | 339 |
| TfiI | GAWTC | 8 cut(s) | 437, 683, 912, 1163, 1274, 1327, 1521, 1958 |
| Tru1I | TTAA | 5 cut(s) | 678, 849, 939, 1506, 1667 |
| Tru9I | TTAA | 5 cut(s) | 678, 849, 939, 1506, 1667 |
| TseFI | GTSAC | 2 cut(s) | 408, 1589 |
| TseI | GCWGC | 2 cut(s) | 758, 1847 |
| Tsp45I | GTSAC | 2 cut(s) | 408, 1589 |
| TspDTI | ATGAA | 9 cut(s) | 621, 867, 974, 990, 1266, 1482, 1908, 1953, 2034 |
| TspGWI | ACGGA | 4 cut(s) | 107, 161, 215, 269 |
| VneI | GTGCAC | 5 cut(s) | 43, 97, 151, 205, 1208 |
| VpaK11BI | GGWCC | 3 cut(s) | 746, 1679, 1792 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 12 |
| XapI | RAATTY | 5 cut(s) | 305, 868, 901, 1495, 1501 |
| XbaI | TCTAGA | 1 cut(s) | 2011 |
| XceI | RCATGY | 4 cut(s) | 586, 1081, 1231, 1291 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1821 |
| XmnI | GAANNNNTTC | 1 cut(s) | 903 |
| XspI | CTAG | 3 cut(s) | 1265, 1430, 2012 |
| Zsp2I | ATGCAT | 1 cut(s) | 1233 |