AT1G77880

protein ubiquitination

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0010182
Physical Location & Seq
Reverse (-)
29285902 .. 29287190
1289 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G77880.1

Sequence Viewer

Length: 393 bp
ATGAGGAAGAAGAAGAAGAAGATTGTGTTGAGTAGCACATCTGAAGCTGAAAAGGTTAGTATACCATATCTCCCAGACGATCTACTCTTGAATTGCTTAGCACGCATCTCTAGATTGTACTACCCAACTCTCTCGTTAGTCTCCAAGAGATTCCGCTCTCTTCTCGCTTCCACAGAGCTCTACGAGACCCGACGGCTTTTAGGTACCTCCGAGAGTTGTCTCTATTTCTTTATGACTGAGAGGCGCAACGACCATGAGGTTTATGGGAAAGTTGAGTGGTGTCATGTTGTGCATACGTTGCCCCTATTCAATTTGTCTCGAGCACTATCTTGTTACCACTGTTTGAGTCATTGCTTCCTCATGATCATATATATCATTTTGTTTTCTATATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
F-box Kelch_1

Protein Analysis

130

Amino Acids

15.29

Weight (kDa)

9.22

Isoelectric Point (pI)

47.39

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
F-box PF00646 24 - 62 9.6e-10 F-box domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 203
AccB1I GGYRCC 1 cut(s) 203
AccBSI CCGCTC 1 cut(s) 156
AccI GTMKAC 1 cut(s) 61
AciI CCGC 1 cut(s) 154
AcuI CTGAAG 1 cut(s) 63
AfaI GTAC 2 cut(s) 119, 205
AgsI TTSAA 2 cut(s) 91, 310
AluBI AGCT 2 cut(s) 47, 178
AluI AGCT 2 cut(s) 47, 178
Alw21I GWGCWC 2 cut(s) 180, 325
Alw26I GTCTC 4 cut(s) 145, 179, 224, 321
Ama87I CYCGRG 1 cut(s) 318
Asp718I GGTACC 1 cut(s) 203
AspLEI GCGC 1 cut(s) 246
AvaI CYCGRG 1 cut(s) 318
BanI GGYRCC 1 cut(s) 203
BanII GRGCYC 1 cut(s) 180
Bbv12I GWGCWC 2 cut(s) 180, 325
BceAI ACGGC 1 cut(s) 209
BclI TGATCA 1 cut(s) 363
BcoDI GTCTC 4 cut(s) 145, 179, 224, 321
BfaI CTAG 1 cut(s) 111
BlpI GCTNAGC 1 cut(s) 97
BmeT110I CYCGRG 1 cut(s) 318
BmiI GGNNCC 1 cut(s) 205
BmsI GCATC 1 cut(s) 114
Bpu1102I GCTNAGC 1 cut(s) 97
BsaI GGTCTC 1 cut(s) 179
BsaXI ACNNNNNCTCC 2 cut(s) 54, 84
Bse3DI GCAATG 1 cut(s) 349
BseMI GCAATG 1 cut(s) 349
BseMII CTCAG 1 cut(s) 228
BshNI GGYRCC 1 cut(s) 203
BsiHKAI GWGCWC 2 cut(s) 180, 325
BsiHKCI CYCGRG 1 cut(s) 318
BsmAI GTCTC 4 cut(s) 145, 179, 224, 321
Bso31I GGTCTC 1 cut(s) 179
BsoBI CYCGRG 1 cut(s) 318
Bsp1286I GDGCHC 2 cut(s) 180, 325
Bsp143I GATC 2 cut(s) 79, 363
Bsp1720I GCTNAGC 1 cut(s) 97
BspACI CCGC 1 cut(s) 154
BspCNI CTCAG 1 cut(s) 229
BspHI TCATGA 1 cut(s) 360
BspLI GGNNCC 1 cut(s) 205
BspT107I GGYRCC 1 cut(s) 203
BspTNI GGTCTC 1 cut(s) 179
BsrBI CCGCTC 1 cut(s) 156
BsrDI GCAATG 1 cut(s) 349
BssMI GATC 2 cut(s) 79, 363
BssNAI GTATAC 1 cut(s) 62
Bst1107I GTATAC 1 cut(s) 62
Bst4CI ACNGT 1 cut(s) 341
Bst6I CTCTTC 1 cut(s) 165
BstAPI GCANNNNNTGC 1 cut(s) 298
BstC8I GCNNGC 1 cut(s) 103
BstDEI CTNAG 2 cut(s) 97, 237
BstHHI GCGC 1 cut(s) 246
BstKTI GATC 2 cut(s) 82, 366
BstMAI GTCTC 4 cut(s) 145, 179, 224, 321
BstMBI GATC 2 cut(s) 79, 363
BstMWI GCNNNNNNNGC 2 cut(s) 102, 298
BstZ17I GTATAC 1 cut(s) 62
BtsIMutI CAGTG 1 cut(s) 337
Cac8I GCNNGC 1 cut(s) 103
CciI TCATGA 1 cut(s) 360
CfoI GCGC 1 cut(s) 246
Csp6I GTAC 2 cut(s) 118, 204
CviAII CATG 3 cut(s) 254, 284, 361
CviJI RGCY 3 cut(s) 47, 178, 196
CviKI_1 RGCY 3 cut(s) 47, 178, 196
CviQI GTAC 2 cut(s) 118, 204
DdeI CTNAG 2 cut(s) 97, 237
DpnI GATC 2 cut(s) 81, 365
DpnII GATC 2 cut(s) 79, 363
Eam1104I CTCTTC 1 cut(s) 165
EarI CTCTTC 1 cut(s) 165
Ecl136II GAGCTC 1 cut(s) 178
Eco24I GRGCYC 1 cut(s) 180
Eco31I GGTCTC 1 cut(s) 179
Eco53kI GAGCTC 1 cut(s) 178
Eco57I CTGAAG 1 cut(s) 63
Eco88I CYCGRG 1 cut(s) 318
EcoICRI GAGCTC 1 cut(s) 178
EcoT38I GRGCYC 1 cut(s) 180
FaeI CATG 3 cut(s) 257, 287, 364
FatI CATG 3 cut(s) 253, 283, 360
FbaI TGATCA 1 cut(s) 363
FblI GTMKAC 1 cut(s) 61
FriOI GRGCYC 1 cut(s) 180
FspBI CTAG 1 cut(s) 111
GlaI GCGC 1 cut(s) 245
HhaI GCGC 1 cut(s) 246
Hin1II CATG 3 cut(s) 257, 287, 364
Hin6I GCGC 1 cut(s) 244
HinP1I GCGC 1 cut(s) 244
HinfI GANTC 2 cut(s) 150, 346
Hpy166II GTNNAC 1 cut(s) 62
Hpy188I TCNGA 2 cut(s) 43, 211
Hpy188III TCNNGA 4 cut(s) 88, 111, 318, 361
Hpy8I GTNNAC 1 cut(s) 62
Hpy99I CGWCG 1 cut(s) 195
HpyCH4III ACNGT 1 cut(s) 341
HpyCH4IV ACGT 1 cut(s) 296
HpyCH4V TGCA 1 cut(s) 292
HpyF10VI GCNNNNNNNGC 2 cut(s) 102, 298
HpyF3I CTNAG 2 cut(s) 97, 237
HpySE526I ACGT 1 cut(s) 296
Hsp92II CATG 3 cut(s) 257, 287, 364
HspAI GCGC 1 cut(s) 244
KpnI GGTACC 1 cut(s) 207
Ksp22I TGATCA 1 cut(s) 363
Kzo9I GATC 2 cut(s) 79, 363
LpnPI CCDG 1 cut(s) 87
LweI GCATC 1 cut(s) 114
MaeI CTAG 1 cut(s) 111
MaeII ACGT 1 cut(s) 296
MaeIII GTNAC 1 cut(s) 332
MalI GATC 2 cut(s) 81, 365
MbiI CCGCTC 1 cut(s) 156
MboI GATC 2 cut(s) 79, 363
MboII GAAGA 6 cut(s) 19, 22, 25, 28, 31, 152
MhlI GDGCHC 2 cut(s) 180, 325
MluCI AATT 2 cut(s) 91, 310
MlyI GAGTC 1 cut(s) 355
MnlI CCTC 4 cut(s) 217, 234, 250, 368
MwoI GCNNNNNNNGC 2 cut(s) 102, 298
NdeII GATC 2 cut(s) 79, 363
NlaIII CATG 3 cut(s) 257, 287, 364
NlaIV GGNNCC 1 cut(s) 205
PaeR7I CTCGAG 1 cut(s) 318
PagI TCATGA 1 cut(s) 360
PfeI GAWTC 1 cut(s) 150
PleI GAGTC 1 cut(s) 354
PpsI GAGTC 1 cut(s) 354
Psp124BI GAGCTC 1 cut(s) 180
PspN4I GGNNCC 1 cut(s) 205
RsaI GTAC 2 cut(s) 119, 205
RsaNI GTAC 2 cut(s) 118, 204
SacI GAGCTC 1 cut(s) 180
Sau3AI GATC 2 cut(s) 79, 363
SchI GAGTC 1 cut(s) 355
SduI GDGCHC 2 cut(s) 180, 325
SetI ASST 7 cut(s) 49, 57, 180, 205, 209, 261, 299
SfaNI GCATC 1 cut(s) 114
Sfr274I CTCGAG 1 cut(s) 318
SlaI CTCGAG 1 cut(s) 318
SmlI CTYRAG 1 cut(s) 318
SmoI CTYRAG 1 cut(s) 318
Sse9I AATT 2 cut(s) 91, 310
SsiI CCGC 1 cut(s) 154
SspMI CTAG 1 cut(s) 111
SstI GAGCTC 1 cut(s) 180
TaaI ACNGT 1 cut(s) 341
TaiI ACGT 1 cut(s) 299
TaqI TCGA 1 cut(s) 319
TasI AATT 2 cut(s) 91, 310
TatI WGTACW 1 cut(s) 117
TfiI GAWTC 1 cut(s) 150
TscAI CASTG 1 cut(s) 344
TspRI CASTG 1 cut(s) 344
XbaI TCTAGA 1 cut(s) 110
XcmI CCANNNNNNNNNTGG 1 cut(s) 260
XhoI CTCGAG 1 cut(s) 318
XmiI GTMKAC 1 cut(s) 61
XspI CTAG 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.