Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0010182

Physical Location & Seq

Genomic Coordinates Reverse (-)

19415338 .. 19418053

Gene Structure 2716 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0206900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

ATGGCGAGTGGTGAGGGGGAAGTGATGAGGAACAAGCAGGTGATATTCAGGGACTATGTGACTGGCAATCCCAAAGAGTCGGACATGTACGTGACAGACAGTAGTACCATTAAGTTCAAGGTTCCACAGGGCTCAGTCGCGGTGCTAGTCAAGAACCTTTACTTGGCGTGTGACCCTTATTTGAGGATTCGAATGGGGCGAATTGAAGGTTCTAGTGTCTTCACTTCCTTCACCCCTGGCTCTCCATTGAGTGGATTTGGAGTGGCTAAAGTCTTGGATTCCGGGCATCCGGAGTTTAAGGAAGGTGACTTGGTTTGGGGAACAACCGGATGGGAAGAGTATAGTCTCATCACAGAACCAGAACAACTCTTCAAGATCCACCACACTGACGTGCCCCTTTCCTACTATACTGGACTTCTTGGTGTGCCGGGTATGACTGCCTTTGTCGGTTTCCATGAAGTGTGCTCGCCTAAAAGAGGAGATTCTGTGTTCGTTTCTGCAGCAGCTGGTGCTGTTGGTCAGCTTGTTGGGCAATTTGCAAAGTTGATGGGGTGCTATGTTGTTGGAAGTGTCGGAAGCAAAGAGAAGGTCGATCTACTAAAGAACAAGCTAGGGTTTGATGAGGCTTTCAATTATAAGGAAGAGCAAGACCTTGATGCTGCTTTGAAAAGGTACTTCCCAAAAGGCATTGATATTTACTTCGAGAATGTTGGTGGTAAAATGCTGGATGCAGTCCTTCTCAACATGAGACCTCATGGCCATATTGCCGTGTGTGGAATGATCTCACATTACAATCTCAATCAACCACAAGGCTTTAGCAATCTCATCTCTCTCATCTACAATCGGATTCGTATGGAAGGCTTCGTTGTTTTCGATTACTTCCATCTCTATCCCAAGTACTTGGACATGGTGTTGCCTTACATCAGAGAAGGAAAAATAGTGTATCTGGAAGATATAGTTGAAGGCCTCGAGAGTGGTCCGGCTGCTCTTGTAGGGCTCTTTAGTGGTCGTAATGTCGGAAAACAAGTAGTTTTGGTTGCTCCAGCTGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_1

Protein Analysis

350

Amino Acids

38.61

Weight (kDa)

5.81

Isoelectric Point (pI)

31.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N_2	PF16884	12 - 126	7.2e-21	N-terminal domain of oxidoreductase
ADH_zinc_N	PF00107	171 - 304	7.2e-25	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	204 - 344	3.2e-07	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010182)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77880 AT1G77880 AT1G77880 AT2G21950
fragaria_vesca	FvH4_1g22291 FvH4_1g22291
prunus_persica	Prupe.6G172900_v2.0.a1 Prupe.6G172900_v2.0.a1
pyrus_communis	pycom15g29250
rosa_chinensis	RchiOBHm_Chr2g0116481
rosa_laevigata	RLG00000018275 RLG00000018277
rosa_multiflora	Rmu_sc0004191.1_g000055 Rmu_sc0019528.1_g000002
rosa_roxburghii	Rroxscaffold_2G00127160 Rroxscaffold_2G00127170
rosa_rugosa	Rorug02G0206800 Rorug02G0206900
rosa_samantha	Rh2CG268600 Rh2DG288700
rosa_wichuraiana	Rw2G020610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	636
AarI	CACCTGC	1 cut(s)	28
Acc36I	ACCTGC	1 cut(s)	28
AccB7I	CCANNNNNTGG	1 cut(s)	251
AccII	CGCG	1 cut(s)	140
AccIII	TCCGGA	1 cut(s)	289
AciI	CCGC	1 cut(s)	140
AclWI	GGATC	1 cut(s)	370
AcoI	YGGCCR	1 cut(s)	757
AfaI	GTAC	4 cut(s)	89, 106, 674, 899
AfiI	CCNNNNNNNGG	3 cut(s)	163, 251, 476
AflIII	ACRYGT	1 cut(s)	84
AgsI	TTSAA	6 cut(s)	118, 206, 373, 631, 667, 962
AjiI	CACGTC	1 cut(s)	391
AjnI	CCWGG	1 cut(s)	235
AjuI	GAANNNNNNNTTGG	2 cut(s)	146, 178
AleI	CACNNNNGTG	1 cut(s)	389
AluBI	AGCT	4 cut(s)	506, 523, 610, 1046
AluI	AGCT	4 cut(s)	506, 523, 610, 1046
Alw21I	GWGCWC	1 cut(s)	467
Alw26I	GTCTC	2 cut(s)	350, 742
AlwI	GGATC	1 cut(s)	370
AlwNI	CAGNNNCTG	1 cut(s)	506
Ama87I	CYCGRG	1 cut(s)	968
Aor13HI	TCCGGA	1 cut(s)	289
AoxI	GGCC	2 cut(s)	757, 964
ApeKI	GCWGC	4 cut(s)	500, 503, 659, 983
ArsI	GACNNNNNNTTYG	2 cut(s)	573, 605
AspS9I	GGNCC	1 cut(s)	977
AsuC2I	CCSGG	2 cut(s)	283, 429
AsuHPI	GGTGA	4 cut(s)	23, 52, 223, 317
AsuII	TTCGAA	1 cut(s)	190
AvaI	CYCGRG	1 cut(s)	968
AvaII	GGWCC	1 cut(s)	977
BaeGI	GKGCMC	1 cut(s)	396
BaeI	ACNNNNGTAYC	2 cut(s)	88, 121
BalI	TGGCCA	1 cut(s)	759
BanII	GRGCYC	2 cut(s)	134, 999
BbsI	GAAGAC	1 cut(s)	211
Bbv12I	GWGCWC	1 cut(s)	467
BbvI	GCAGC	4 cut(s)	512, 515, 646, 970
BccI	CCATC	3 cut(s)	324, 541, 891
BceAI	ACGGC	1 cut(s)	752
BciT130I	CCWGG	1 cut(s)	237
BcnI	CCSGG	2 cut(s)	283, 429
BcoDI	GTCTC	2 cut(s)	350, 742
BfaI	CTAG	3 cut(s)	146, 213, 611
BfmI	CTRYAG	1 cut(s)	498
BfuAI	ACCTGC	1 cut(s)	28
BisI	GCNGC	4 cut(s)	501, 504, 660, 984
BlsI	GCNGC	4 cut(s)	502, 505, 661, 985
BmcAI	AGTACT	1 cut(s)	899
Bme1390I	CCNGG	3 cut(s)	237, 283, 429
Bme18I	GGWCC	1 cut(s)	977
BmeT110I	CYCGRG	1 cut(s)	968
BmgBI	CACGTC	1 cut(s)	391
BmgT120I	GGNCC	1 cut(s)	977
BmiI	GGNNCC	1 cut(s)	123
BmrFI	CCNGG	3 cut(s)	237, 283, 429
BmsI	GCATC	3 cut(s)	295, 646, 718
BpiI	GAAGAC	1 cut(s)	211
BpmI	CTGGAG	1 cut(s)	1026
Bpu14I	TTCGAA	1 cut(s)	190
BpuMI	CCSGG	2 cut(s)	283, 429
BsaAI	YACGTR	1 cut(s)	91
BsaI	GGTCTC	1 cut(s)	742
BsaJI	CCNNGG	1 cut(s)	235
BsaWI	WCCGGW	2 cut(s)	289, 326
BsaXI	ACNNNNNCTCC	2 cut(s)	471, 501
Bsc4I	CCNNNNNNNGG	3 cut(s)	163, 251, 476
Bse1I	ACTGG	2 cut(s)	67, 415
BseAI	TCCGGA	1 cut(s)	289
BseBI	CCWGG	1 cut(s)	237
BseDI	CCNNGG	1 cut(s)	235
BseGI	GGATG	3 cut(s)	286, 335, 733
BseLI	CCNNNNNNNGG	3 cut(s)	163, 251, 476
BseMII	CTCAG	1 cut(s)	147
BseNI	ACTGG	2 cut(s)	67, 415
BseRI	GAGGAG	1 cut(s)	492
BseSI	GKGCMC	1 cut(s)	396
BseXI	GCAGC	4 cut(s)	512, 515, 646, 970
Bsh1236I	CGCG	1 cut(s)	140
BshFI	GGCC	2 cut(s)	759, 966
BsiHKAI	GWGCWC	1 cut(s)	467
BsiHKCI	CYCGRG	1 cut(s)	968
BsiSI	CCGG	5 cut(s)	282, 290, 327, 428, 980
BslFI	GGGAC	1 cut(s)	65
BslI	CCNNNNNNNGG	3 cut(s)	163, 251, 476
BsmAI	GTCTC	2 cut(s)	350, 742
BsmFI	GGGAC	1 cut(s)	65
BsnI	GGCC	2 cut(s)	759, 966
Bso31I	GGTCTC	1 cut(s)	742
BsoBI	CYCGRG	1 cut(s)	968
Bsp119I	TTCGAA	1 cut(s)	190
Bsp1286I	GDGCHC	4 cut(s)	134, 396, 467, 999
Bsp13I	TCCGGA	1 cut(s)	289
Bsp143I	GATC	3 cut(s)	375, 592, 780
BspACI	CCGC	1 cut(s)	140
BspANI	GGCC	2 cut(s)	759, 966
BspCNI	CTCAG	1 cut(s)	146
BspEI	TCCGGA	1 cut(s)	289
BspFNI	CGCG	1 cut(s)	140
BspLI	GGNNCC	1 cut(s)	123
BspMAI	CTGCAG	1 cut(s)	502
BspMI	ACCTGC	1 cut(s)	28
BspPI	GGATC	1 cut(s)	370
BspQI	GCTCTTC	1 cut(s)	636
BspT104I	TTCGAA	1 cut(s)	190
BspTNI	GGTCTC	1 cut(s)	742
BsrI	ACTGG	2 cut(s)	67, 415
BssECI	CCNNGG	1 cut(s)	235
BssMI	GATC	3 cut(s)	375, 592, 780
Bst2UI	CCWGG	1 cut(s)	237
Bst4CI	ACNGT	1 cut(s)	101
Bst6I	CTCTTC	3 cut(s)	330, 374, 636
BstAPI	GCANNNNNTGC	1 cut(s)	509
BstBAI	YACGTR	1 cut(s)	91
BstBI	TTCGAA	1 cut(s)	190
BstC8I	GCNNGC	1 cut(s)	467
BstDEI	CTNAG	1 cut(s)	133
BstENI	CCTNNNNNAGG	1 cut(s)	474
BstF5I	GGATG	3 cut(s)	286, 335, 733
BstFNI	CGCG	1 cut(s)	140
BstKTI	GATC	3 cut(s)	378, 595, 783
BstMAI	GTCTC	2 cut(s)	350, 742
BstMBI	GATC	3 cut(s)	375, 592, 780
BstMWI	GCNNNNNNNGC	2 cut(s)	509, 529
BstNI	CCWGG	1 cut(s)	237
BstNSI	RCATGY	1 cut(s)	88
BstSCI	CCNGG	3 cut(s)	235, 281, 427
BstSFI	CTRYAG	1 cut(s)	498
BstSLI	GKGCMC	1 cut(s)	396
BstUI	CGCG	1 cut(s)	140
BstV1I	GCAGC	4 cut(s)	512, 515, 646, 970
BstV2I	GAAGAC	1 cut(s)	211
BstX2I	RGATCY	1 cut(s)	375
BstXI	CCANNNNNNTGG	1 cut(s)	901
BstYI	RGATCY	1 cut(s)	375
BsuRI	GGCC	2 cut(s)	759, 966
BtrI	CACGTC	1 cut(s)	391
BtsCI	GGATG	3 cut(s)	286, 335, 733
BtsIMutI	CAGTG	1 cut(s)	384
BveI	ACCTGC	1 cut(s)	28
Cac8I	GCNNGC	1 cut(s)	467
CaiI	CAGNNNCTG	1 cut(s)	506
Cfr13I	GGNCC	1 cut(s)	977
Csp6I	GTAC	4 cut(s)	88, 105, 673, 898
CviAII	CATG	5 cut(s)	85, 455, 745, 755, 907
CviQI	GTAC	4 cut(s)	88, 105, 673, 898
DdeI	CTNAG	1 cut(s)	133
DpnI	GATC	3 cut(s)	377, 594, 782
DpnII	GATC	3 cut(s)	375, 592, 780
EaeI	YGGCCR	1 cut(s)	757
Eam1104I	CTCTTC	3 cut(s)	330, 374, 636
EarI	CTCTTC	3 cut(s)	330, 374, 636
Eco147I	AGGCCT	1 cut(s)	966
Eco24I	GRGCYC	2 cut(s)	134, 999
Eco31I	GGTCTC	1 cut(s)	742
Eco47I	GGWCC	1 cut(s)	977
Eco88I	CYCGRG	1 cut(s)	968
EcoNI	CCTNNNNNAGG	1 cut(s)	474
EcoRII	CCWGG	1 cut(s)	235
EcoT38I	GRGCYC	2 cut(s)	134, 999
FaeI	CATG	5 cut(s)	88, 458, 748, 758, 910
FaqI	GGGAC	1 cut(s)	65
FatI	CATG	5 cut(s)	84, 454, 744, 754, 906
Fnu4HI	GCNGC	4 cut(s)	501, 504, 660, 984
FokI	GGATG	3 cut(s)	273, 342, 740
FriOI	GRGCYC	2 cut(s)	134, 999
Fsp4HI	GCNGC	4 cut(s)	501, 504, 660, 984
FspBI	CTAG	3 cut(s)	146, 213, 611
GluI	GCNGC	4 cut(s)	501, 504, 660, 984
GsuI	CTGGAG	1 cut(s)	1026
HaeIII	GGCC	2 cut(s)	759, 966
HapII	CCGG	5 cut(s)	282, 290, 327, 428, 980
Hin1II	CATG	5 cut(s)	88, 458, 748, 758, 910
HinfI	GANTC	5 cut(s)	77, 187, 278, 482, 847
HpaII	CCGG	5 cut(s)	282, 290, 327, 428, 980
HphI	GGTGA	4 cut(s)	23, 52, 223, 317
Hpy188I	TCNGA	5 cut(s)	82, 575, 846, 926, 1019
Hpy188III	TCNNGA	6 cut(s)	151, 290, 373, 703, 947, 970
HpyAV	CCTTC	8 cut(s)	200, 238, 296, 580, 746, 851, 923, 956
HpyCH4III	ACNGT	1 cut(s)	101
HpyCH4IV	ACGT	2 cut(s)	90, 390
HpyCH4V	TGCA	3 cut(s)	500, 539, 731
HpyF10VI	GCNNNNNNNGC	2 cut(s)	509, 529
HpyF3I	CTNAG	1 cut(s)	133
HpySE526I	ACGT	2 cut(s)	90, 390
Hsp92II	CATG	5 cut(s)	88, 458, 748, 758, 910
Kpn2I	TCCGGA	1 cut(s)	289
Kzo9I	GATC	3 cut(s)	375, 592, 780
LguI	GCTCTTC	1 cut(s)	636
LmnI	GCTCC	1 cut(s)	1045
Lsp1109I	GCAGC	4 cut(s)	512, 515, 646, 970
LweI	GCATC	3 cut(s)	295, 646, 718
MaeI	CTAG	3 cut(s)	146, 213, 611
MaeII	ACGT	2 cut(s)	90, 390
MaeIII	GTNAC	4 cut(s)	58, 91, 170, 305
MalI	GATC	3 cut(s)	377, 594, 782
MboI	GATC	3 cut(s)	375, 592, 780
MboII	GAAGA	5 cut(s)	211, 347, 361, 653, 962
MflI	RGATCY	1 cut(s)	375
MhlI	GDGCHC	4 cut(s)	134, 396, 467, 999
MlsI	TGGCCA	1 cut(s)	759
MluCI	AATT	3 cut(s)	201, 533, 631
MluNI	TGGCCA	1 cut(s)	759
MlyI	GAGTC	1 cut(s)	86
MmeI	TCCRAC	4 cut(s)	60, 544, 553, 997
MnlI	CCTC	7 cut(s)	7, 21, 177, 470, 616, 762, 977
Mox20I	TGGCCA	1 cut(s)	759
MroI	TCCGGA	1 cut(s)	289
MscI	TGGCCA	1 cut(s)	759
MseI	TTAA	2 cut(s)	111, 297
MslI	CAYNNNNRTG	2 cut(s)	89, 389
Msp20I	TGGCCA	1 cut(s)	759
MspA1I	CMGCKG	2 cut(s)	506, 1046
MspI	CCGG	5 cut(s)	282, 290, 327, 428, 980
MspR9I	CCNGG	3 cut(s)	237, 283, 429
MvaI	CCWGG	1 cut(s)	237
MvnI	CGCG	1 cut(s)	140
MwoI	GCNNNNNNNGC	2 cut(s)	509, 529
NciI	CCSGG	2 cut(s)	283, 429
NdeII	GATC	3 cut(s)	375, 592, 780
NlaIII	CATG	5 cut(s)	88, 458, 748, 758, 910
NlaIV	GGNNCC	1 cut(s)	123
NmuCI	GTSAC	4 cut(s)	58, 91, 170, 305
NspI	RCATGY	1 cut(s)	88
NspV	TTCGAA	1 cut(s)	190
OliI	CACNNNNGTG	1 cut(s)	389
PaeR7I	CTCGAG	1 cut(s)	968
PaqCI	CACCTGC	1 cut(s)	28
PceI	AGGCCT	1 cut(s)	966
PciI	ACATGT	1 cut(s)	84
PciSI	GCTCTTC	1 cut(s)	636
PcsI	WCGNNNNNNNCGW	2 cut(s)	196, 870
PfeI	GAWTC	4 cut(s)	187, 278, 482, 847
PflMI	CCANNNNNTGG	1 cut(s)	251
PkrI	GCNGC	4 cut(s)	502, 505, 661, 985
PleI	GAGTC	1 cut(s)	85
PpsI	GAGTC	1 cut(s)	85
Ppu21I	YACGTR	1 cut(s)	91
PscI	ACATGT	1 cut(s)	84
PsiI	TTATAA	1 cut(s)	636
Psp6I	CCWGG	1 cut(s)	235
PspGI	CCWGG	1 cut(s)	235
PspN4I	GGNNCC	1 cut(s)	123
PspPI	GGNCC	1 cut(s)	977
PstI	CTGCAG	1 cut(s)	502
PstNI	CAGNNNCTG	1 cut(s)	506
PsuI	RGATCY	1 cut(s)	375
PvuII	CAGCTG	2 cut(s)	506, 1046
RsaI	GTAC	4 cut(s)	89, 106, 674, 899
RsaNI	GTAC	4 cut(s)	88, 105, 673, 898
RseI	CAYNNNNRTG	2 cut(s)	89, 389
SapI	GCTCTTC	1 cut(s)	636
SaqAI	TTAA	2 cut(s)	111, 297
SatI	GCNGC	4 cut(s)	501, 504, 660, 984
Sau3AI	GATC	3 cut(s)	375, 592, 780
Sau96I	GGNCC	1 cut(s)	977
ScaI	AGTACT	1 cut(s)	899
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	3 cut(s)	237, 283, 429
SduI	GDGCHC	4 cut(s)	134, 396, 467, 999
SfaNI	GCATC	3 cut(s)	295, 646, 718
SfcI	CTRYAG	1 cut(s)	498
Sfr274I	CTCGAG	1 cut(s)	968
SfuI	TTCGAA	1 cut(s)	190
SinI	GGWCC	1 cut(s)	977
SlaI	CTCGAG	1 cut(s)	968
SmiMI	CAYNNNNRTG	2 cut(s)	89, 389
SmlI	CTYRAG	1 cut(s)	968
SmoI	CTYRAG	1 cut(s)	968
Sse9I	AATT	3 cut(s)	201, 533, 631
SseBI	AGGCCT	1 cut(s)	966
SsiI	CCGC	1 cut(s)	140
SspMI	CTAG	3 cut(s)	146, 213, 611
StuI	AGGCCT	1 cut(s)	966
StyD4I	CCNGG	3 cut(s)	235, 281, 427
TaaI	ACNGT	1 cut(s)	101
TaiI	ACGT	2 cut(s)	93, 393
TaqI	TCGA	5 cut(s)	190, 591, 702, 873, 969
TasI	AATT	3 cut(s)	201, 533, 631
TatI	WGTACW	1 cut(s)	897
TfiI	GAWTC	4 cut(s)	187, 278, 482, 847
Tru1I	TTAA	2 cut(s)	111, 297
Tru9I	TTAA	2 cut(s)	111, 297
TscAI	CASTG	1 cut(s)	391
TseFI	GTSAC	4 cut(s)	58, 91, 170, 305
TseI	GCWGC	4 cut(s)	500, 503, 659, 983
Tsp45I	GTSAC	4 cut(s)	58, 91, 170, 305
TspDTI	ATGAA	1 cut(s)	471
TspRI	CASTG	1 cut(s)	391
Van91I	CCANNNNNTGG	1 cut(s)	251
VpaK11BI	GGWCC	1 cut(s)	977
XagI	CCTNNNNNAGG	1 cut(s)	474
XceI	RCATGY	1 cut(s)	88
XhoI	CTCGAG	1 cut(s)	968
XspI	CTAG	3 cut(s)	146, 213, 611
ZrmI	AGTACT	1 cut(s)	899

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.