Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp06

Orthogroup ID

OG0010182

Physical Location & Seq

Genomic Coordinates Reverse (-)

17769143 .. 17772476

Gene Structure 3334 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.6G172900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1101 bp

ATGTCTACCTCCACCACCACCACACAGAGCAGCTCAGCAACCGAGGCACAACTAATCCCGTCCCTCCCAGACGATGTCGCTTTGAACTGTATAGCGCGGGTCCCACGTTGGTACTACCCGACCCTCTCCATTGTCTCGCGACCCATCCGCTCCCTCCTCTCATCACCACTCTTCTTCACCACCCGCTCCCTCCTCAGCTCCACCGAACATTTCCTCTACCTCACCCTGCGGCTGCACCACAACCCTTCCGCCTGGTTCACACTCTATCAAAACCCCAACCCCAACAACCCAAACAACCCTCACGTTCTCATCCCGGTCCCGCCACTCCCCGCCCCAACAGTCGGCGCCGCATACGCCGTCGTGGGCCCCACCATCTACGTCATCGGAGGCTCAATCAACGACGTCCCTTCCTCGCACGTATGGGTCCTCGACTGCCGCCTCCACACGTGGCGCAAGGGTCCTCCCATGCGCGTGGCGCGCGAGTTCTCGGCTGCCGGCGTCGTCGACGGAAAGATATACGTCATCGGCGGCTGCGTCGCGGACTCGTGGGCCCGGAACGAGTTCTGGGCCGAGTCTCTTGACCCGGGGACGGGCCGCTGGGAGGCGGTGCGGAGCCCGATTGATGTCCGCGCCAAGTGGATGCACGCGAGCGCCGTGATCGGCGCTCGCGTGTACGCCATGGCGGACCGGGGCGGCGTCGTGTTGGACCCGAAAGCCGGAACTTGGGATGTGGTTGATAAAAGGCTTGACTTGGGTTGGAGAGGGAGGGCCTGTGTGGTCCATGGGATTCTCTACTGCTATGACTATTTGGGGAAAATTAGAGGGTTTGATGTGAAGAAGAGGGTTTGGAAAGAGCTCAAGGGACTGGAGAAGGGGCTGCCCAAGTTCTTGTGCGGCGCCACGATGGCGAATGTGGGAGAGAAATTGGTTGTGTTGTGGGAAGGGAAGGGAAATGGTAAAGAAATTGAGATTTGGTGTGCGGAAATTGAAGTGGAGAAAAATGGGGATGGAGAGTTGCAGGGAAAGATTGGTTGGTCCCATAAGCTCATTTCGGTTCCGAAAAACTTCTCCATCGTCAACTGCTTGGCGGTCACGTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_1

Protein Analysis

367

Amino Acids

40.36

Weight (kDa)

9.03

Isoelectric Point (pI)

38.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0010182)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77880 AT1G77880 AT1G77880 AT2G21950
fragaria_vesca	FvH4_1g22291 FvH4_1g22291
prunus_persica	Prupe.6G172900_v2.0.a1 Prupe.6G172900_v2.0.a1
pyrus_communis	pycom15g29250
rosa_chinensis	RchiOBHm_Chr2g0116481
rosa_laevigata	RLG00000018275 RLG00000018277
rosa_multiflora	Rmu_sc0004191.1_g000055 Rmu_sc0019528.1_g000002
rosa_roxburghii	Rroxscaffold_2G00127160 Rroxscaffold_2G00127170
rosa_rugosa	Rorug02G0206800 Rorug02G0206900
rosa_samantha	Rh2CG268600 Rh2DG288700
rosa_wichuraiana	Rw2G020610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	405
AccB1I	GGYRCC	2 cut(s)	344, 896
AccBSI	CCGCTC	2 cut(s)	150, 186
AccI	GTMKAC	2 cut(s)	5, 504
AccII	CGCG	9 cut(s)	97, 139, 471, 478, 480, 539, 630, 647, 669
AcvI	CACGTG	1 cut(s)	447
AcyI	GRCGYC	5 cut(s)	345, 402, 498, 696, 897
AdeI	CACNNNGTG	1 cut(s)	1098
AfaI	GTAC	2 cut(s)	113, 674
AfiI	CCNNNNNNNGG	6 cut(s)	341, 589, 590, 601, 716, 723
AflIII	ACRYGT	1 cut(s)	444
AgsI	TTSAA	2 cut(s)	85, 989
AjnI	CCWGG	1 cut(s)	251
AjuI	GAANNNNNNNTTGG	2 cut(s)	1015, 1047
AluBI	AGCT	4 cut(s)	33, 198, 856, 1045
AluI	AGCT	4 cut(s)	33, 198, 856, 1045
Alw21I	GWGCWC	1 cut(s)	858
Alw26I	GTCTC	2 cut(s)	139, 579
Ama87I	CYCGRG	1 cut(s)	583
AoxI	GGCC	5 cut(s)	364, 549, 567, 592, 768
ApaI	GGGCCC	2 cut(s)	368, 553
ApeKI	GCWGC	5 cut(s)	30, 232, 491, 531, 877
Asp700I	GAANNNNTTC	2 cut(s)	560, 1064
AsuC2I	CCSGG	5 cut(s)	314, 553, 584, 585, 689
AsuHPI	GGTGA	3 cut(s)	156, 169, 214
AvaI	CYCGRG	1 cut(s)	583
AvaII	GGWCC	8 cut(s)	100, 316, 424, 458, 685, 706, 778, 1035
BaeGI	GKGCMC	2 cut(s)	368, 553
BanI	GGYRCC	2 cut(s)	344, 896
BanII	GRGCYC	4 cut(s)	368, 553, 617, 858
BauI	CACGAG	1 cut(s)	544
BbrPI	CACGTG	1 cut(s)	447
Bbv12I	GWGCWC	1 cut(s)	858
BbvCI	CCTCAGC	1 cut(s)	194
BbvI	GCAGC	5 cut(s)	42, 219, 478, 518, 864
BccI	CCATC	5 cut(s)	152, 380, 898, 1001, 1079
BceAI	ACGGC	2 cut(s)	341, 638
BciT130I	CCWGG	1 cut(s)	253
BcnI	CCSGG	5 cut(s)	314, 553, 584, 585, 689
BcoDI	GTCTC	2 cut(s)	139, 579
BfoI	RGCGCY	4 cut(s)	348, 654, 666, 900
BglI	GCCNNNNNGGC	1 cut(s)	905
BlpI	GCTNAGC	1 cut(s)	34
Bme1390I	CCNGG	6 cut(s)	253, 314, 553, 584, 585, 689
Bme18I	GGWCC	8 cut(s)	100, 316, 424, 458, 685, 706, 778, 1035
BmeT110I	CYCGRG	1 cut(s)	583
BmrFI	CCNGG	6 cut(s)	253, 314, 553, 584, 585, 689
BmsI	GCATC	1 cut(s)	630
BpmI	CTGGAG	1 cut(s)	887
Bpu10I	CCTNAGC	1 cut(s)	194
Bpu1102I	GCTNAGC	1 cut(s)	34
BpuEI	CTTGAG	1 cut(s)	842
BpuMI	CCSGG	5 cut(s)	314, 553, 584, 585, 689
BsaAI	YACGTR	2 cut(s)	418, 447
BsaHI	GRCGYC	5 cut(s)	345, 402, 498, 696, 897
BsaJI	CCNNGG	6 cut(s)	42, 583, 584, 678, 688, 781
BsaXI	ACNNNNNCTCC	2 cut(s)	757, 787
Bsc4I	CCNNNNNNNGG	6 cut(s)	341, 589, 590, 601, 716, 723
Bse118I	RCCGGY	1 cut(s)	494
Bse1I	ACTGG	1 cut(s)	870
BseBI	CCWGG	1 cut(s)	253
BseDI	CCNNGG	6 cut(s)	42, 583, 584, 678, 688, 781
BseGI	GGATG	5 cut(s)	144, 309, 645, 733, 1012
BseLI	CCNNNNNNNGG	6 cut(s)	341, 589, 590, 601, 716, 723
BseMII	CTCAG	2 cut(s)	48, 208
BseNI	ACTGG	1 cut(s)	870
BsePI	GCGCGC	1 cut(s)	476
BseRI	GAGGAG	2 cut(s)	146, 182
BseSI	GKGCMC	2 cut(s)	368, 553
BseXI	GCAGC	5 cut(s)	42, 219, 478, 518, 864
BseYI	CCCAGC	1 cut(s)	597
BsgI	GTGCAG	1 cut(s)	218
Bsh1236I	CGCG	9 cut(s)	97, 139, 471, 478, 480, 539, 630, 647, 669
BshFI	GGCC	5 cut(s)	366, 551, 569, 594, 770
BshNI	GGYRCC	2 cut(s)	344, 896
BsiHKAI	GWGCWC	1 cut(s)	858
BsiHKCI	CYCGRG	1 cut(s)	583
BsiSI	CCGG	6 cut(s)	314, 495, 553, 584, 688, 717
BslFI	GGGAC	7 cut(s)	46, 86, 302, 389, 601, 876, 1021
BslI	CCNNNNNNNGG	6 cut(s)	341, 589, 590, 601, 716, 723
BsmAI	GTCTC	2 cut(s)	139, 579
BsmFI	GGGAC	7 cut(s)	46, 86, 302, 389, 601, 876, 1021
BsnI	GGCC	5 cut(s)	366, 551, 569, 594, 770
BsoBI	CYCGRG	1 cut(s)	583
Bsp120I	GGGCCC	2 cut(s)	364, 549
Bsp1286I	GDGCHC	4 cut(s)	368, 553, 617, 858
Bsp143I	GATC	1 cut(s)	657
Bsp1720I	GCTNAGC	1 cut(s)	34
Bsp19I	CCATGG	2 cut(s)	678, 781
Bsp68I	TCGCGA	1 cut(s)	139
BspANI	GGCC	5 cut(s)	366, 551, 569, 594, 770
BspCNI	CTCAG	2 cut(s)	47, 207
BspFNI	CGCG	9 cut(s)	97, 139, 471, 478, 480, 539, 630, 647, 669
BspT107I	GGYRCC	2 cut(s)	344, 896
BsrBI	CCGCTC	2 cut(s)	150, 186
BsrFI	RCCGGY	1 cut(s)	494
BsrI	ACTGG	1 cut(s)	870
BssAI	RCCGGY	1 cut(s)	494
BssECI	CCNNGG	6 cut(s)	42, 583, 584, 678, 688, 781
BssHII	GCGCGC	1 cut(s)	476
BssMI	GATC	1 cut(s)	657
BssNI	GRCGYC	5 cut(s)	345, 402, 498, 696, 897
BssSI	CACGAG	1 cut(s)	544
BssT1I	CCWWGG	2 cut(s)	678, 781
Bst2BI	CACGAG	1 cut(s)	544
Bst2UI	CCWGG	1 cut(s)	253
Bst4CI	ACNGT	2 cut(s)	89, 340
Bst6I	CTCTTC	2 cut(s)	176, 833
BstACI	GRCGYC	5 cut(s)	345, 402, 498, 696, 897
BstBAI	YACGTR	2 cut(s)	418, 447
BstC8I	GCNNGC	5 cut(s)	478, 496, 645, 649, 667
BstDEI	CTNAG	2 cut(s)	34, 194
BstDSI	CCRYGG	2 cut(s)	678, 781
BstF5I	GGATG	5 cut(s)	144, 309, 645, 733, 1012
BstFNI	CGCG	9 cut(s)	97, 139, 471, 478, 480, 539, 630, 647, 669
BstH2I	RGCGCY	4 cut(s)	348, 654, 666, 900
BstKTI	GATC	1 cut(s)	660
BstMAI	GTCTC	2 cut(s)	139, 579
BstMBI	GATC	1 cut(s)	657
BstMWI	GCNNNNNNNGC	5 cut(s)	44, 353, 475, 477, 905
BstNI	CCWGG	1 cut(s)	253
BstSCI	CCNGG	6 cut(s)	251, 312, 551, 582, 583, 687
BstSLI	GKGCMC	2 cut(s)	368, 553
BstUI	CGCG	9 cut(s)	97, 139, 471, 478, 480, 539, 630, 647, 669
BstV1I	GCAGC	5 cut(s)	42, 219, 478, 518, 864
BstXI	CCANNNNNNTGG	1 cut(s)	472
BsuRI	GGCC	5 cut(s)	366, 551, 569, 594, 770
BtgI	CCRYGG	2 cut(s)	678, 781
BtsCI	GGATG	5 cut(s)	144, 309, 645, 733, 1012
BtuMI	TCGCGA	1 cut(s)	139
Cac8I	GCNNGC	5 cut(s)	478, 496, 645, 649, 667
Cfr10I	RCCGGY	1 cut(s)	494
Cfr9I	CCCGGG	1 cut(s)	583
CpoI	CGGWCCG	1 cut(s)	685
CseI	GACGC	3 cut(s)	487, 523, 685
Csp6I	GTAC	2 cut(s)	112, 673
CspI	CGGWCCG	1 cut(s)	685
CviAII	CATG	3 cut(s)	466, 679, 782
CviQI	GTAC	2 cut(s)	112, 673
DdeI	CTNAG	2 cut(s)	34, 194
DinI	GGCGCC	2 cut(s)	346, 898
DpnI	GATC	1 cut(s)	659
DpnII	GATC	1 cut(s)	657
DraIII	CACNNNGTG	1 cut(s)	1098
Eam1104I	CTCTTC	2 cut(s)	176, 833
EarI	CTCTTC	2 cut(s)	176, 833
EciI	GGCGGA	2 cut(s)	238, 698
Ecl136II	GAGCTC	1 cut(s)	856
Eco130I	CCWWGG	2 cut(s)	678, 781
Eco24I	GRGCYC	4 cut(s)	368, 553, 617, 858
Eco47I	GGWCC	8 cut(s)	100, 316, 424, 458, 685, 706, 778, 1035
Eco53kI	GAGCTC	1 cut(s)	856
Eco72I	CACGTG	1 cut(s)	447
Eco88I	CYCGRG	1 cut(s)	583
EcoICRI	GAGCTC	1 cut(s)	856
EcoO109I	RGGNCCY	5 cut(s)	100, 365, 424, 458, 768
EcoRII	CCWGG	1 cut(s)	251
EcoT14I	CCWWGG	2 cut(s)	678, 781
EcoT38I	GRGCYC	4 cut(s)	368, 553, 617, 858
EgeI	GGCGCC	2 cut(s)	346, 898
EheI	GGCGCC	2 cut(s)	346, 898
ErhI	CCWWGG	2 cut(s)	678, 781
FaeI	CATG	3 cut(s)	469, 682, 785
FaiI	YATR	9 cut(s)	92, 352, 421, 467, 517, 680, 783, 801, 1041
FaqI	GGGAC	7 cut(s)	46, 86, 302, 389, 601, 876, 1021
FatI	CATG	3 cut(s)	465, 678, 781
FauI	CCCGC	4 cut(s)	90, 191, 327, 337
FblI	GTMKAC	2 cut(s)	5, 504
FokI	GGATG	5 cut(s)	131, 296, 652, 740, 1019
FriOI	GRGCYC	4 cut(s)	368, 553, 617, 858
GsaI	CCCAGC	1 cut(s)	601
GsuI	CTGGAG	1 cut(s)	887
HaeII	RGCGCY	4 cut(s)	348, 654, 666, 900
HaeIII	GGCC	5 cut(s)	366, 551, 569, 594, 770
HapII	CCGG	6 cut(s)	314, 495, 553, 584, 688, 717
HgaI	GACGC	3 cut(s)	487, 523, 685
Hin1I	GRCGYC	5 cut(s)	345, 402, 498, 696, 897
Hin1II	CATG	3 cut(s)	469, 682, 785
HincII	GTYRAC	2 cut(s)	505, 1078
HindII	GTYRAC	2 cut(s)	505, 1078
HinfI	GANTC	3 cut(s)	542, 572, 787
HpaII	CCGG	6 cut(s)	314, 495, 553, 584, 688, 717
HphI	GGTGA	3 cut(s)	156, 169, 214
Hpy166II	GTNNAC	5 cut(s)	6, 258, 505, 673, 1078
Hpy188I	TCNGA	2 cut(s)	386, 1059
Hpy188III	TCNNGA	2 cut(s)	138, 578
Hpy8I	GTNNAC	5 cut(s)	6, 258, 505, 673, 1078
Hpy99I	CGWCG	7 cut(s)	362, 404, 503, 506, 509, 539, 701
HpyAV	CCTTC	5 cut(s)	255, 417, 865, 935, 940
HpyCH4III	ACNGT	2 cut(s)	89, 340
HpyCH4IV	ACGT	8 cut(s)	106, 303, 378, 402, 417, 446, 519, 1094
HpyCH4V	TGCA	3 cut(s)	235, 643, 1018
HpyF10VI	GCNNNNNNNGC	5 cut(s)	44, 353, 475, 477, 905
HpyF3I	CTNAG	2 cut(s)	34, 194
HpySE526I	ACGT	8 cut(s)	106, 303, 378, 402, 417, 446, 519, 1094
Hsp92I	GRCGYC	5 cut(s)	345, 402, 498, 696, 897
Hsp92II	CATG	3 cut(s)	469, 682, 785
KasI	GGCGCC	2 cut(s)	344, 896
KflI	GGGWCCC	1 cut(s)	100
KroI	GCCGGC	1 cut(s)	494
KroNI	GCCGGC	1 cut(s)	496
Kzo9I	GATC	1 cut(s)	657
LmnI	GCTCC	4 cut(s)	155, 191, 203, 612
Lsp1109I	GCAGC	5 cut(s)	42, 219, 478, 518, 864
LweI	GCATC	1 cut(s)	630
MaeII	ACGT	8 cut(s)	106, 303, 378, 402, 417, 446, 519, 1094
MaeIII	GTNAC	1 cut(s)	1090
MalI	GATC	1 cut(s)	659
MbiI	CCGCTC	2 cut(s)	150, 186
MboI	GATC	1 cut(s)	657
MboII	GAAGA	4 cut(s)	163, 166, 847, 850
MhlI	GDGCHC	4 cut(s)	368, 553, 617, 858
MluCI	AATT	4 cut(s)	816, 923, 963, 984
Mly113I	GGCGCC	2 cut(s)	345, 897
MlyI	GAGTC	2 cut(s)	536, 581
MmeI	TCCRAC	2 cut(s)	684, 737
MroNI	GCCGGC	1 cut(s)	494
MroXI	GAANNNNTTC	2 cut(s)	560, 1064
MslI	CAYNNNNRTG	1 cut(s)	470
MspA1I	CMGCKG	1 cut(s)	597
MspI	CCGG	6 cut(s)	314, 495, 553, 584, 688, 717
MspR9I	CCNGG	6 cut(s)	253, 314, 553, 584, 585, 689
MvaI	CCWGG	1 cut(s)	253
MvnI	CGCG	9 cut(s)	97, 139, 471, 478, 480, 539, 630, 647, 669
MwoI	GCNNNNNNNGC	5 cut(s)	44, 353, 475, 477, 905
NaeI	GCCGGC	1 cut(s)	496
NarI	GGCGCC	2 cut(s)	345, 897
NciI	CCSGG	5 cut(s)	314, 553, 584, 585, 689
NcoI	CCATGG	2 cut(s)	678, 781
NdeII	GATC	1 cut(s)	657
NgoMIV	GCCGGC	1 cut(s)	494
NlaIII	CATG	3 cut(s)	469, 682, 785
NmeAIII	GCCGAG	2 cut(s)	467, 595
NmuCI	GTSAC	1 cut(s)	1090
NruI	TCGCGA	1 cut(s)	139
PauI	GCGCGC	1 cut(s)	476
PcsI	WCGNNNNNNNCGW	3 cut(s)	531, 651, 666
PdiI	GCCGGC	1 cut(s)	496
PdmI	GAANNNNTTC	2 cut(s)	560, 1064
PfeI	GAWTC	1 cut(s)	787
PflFI	GACNNNGTC	1 cut(s)	74
PleI	GAGTC	2 cut(s)	536, 580
PluTI	GGCGCC	2 cut(s)	348, 900
PmaCI	CACGTG	1 cut(s)	447
PmlI	CACGTG	1 cut(s)	447
PpsI	GAGTC	2 cut(s)	536, 580
Ppu21I	YACGTR	2 cut(s)	418, 447
PpuMI	RGGWCCY	3 cut(s)	100, 424, 458
Psp124BI	GAGCTC	1 cut(s)	858
Psp5II	RGGWCCY	3 cut(s)	100, 424, 458
Psp6I	CCWGG	1 cut(s)	251
PspCI	CACGTG	1 cut(s)	447
PspFI	CCCAGC	1 cut(s)	597
PspGI	CCWGG	1 cut(s)	251
PspOMI	GGGCCC	2 cut(s)	364, 549
PspPPI	RGGWCCY	3 cut(s)	100, 424, 458
PsyI	GACNNNGTC	1 cut(s)	74
PteI	GCGCGC	1 cut(s)	476
RruI	TCGCGA	1 cut(s)	139
RsaI	GTAC	2 cut(s)	113, 674
RsaNI	GTAC	2 cut(s)	112, 673
RseI	CAYNNNNRTG	1 cut(s)	470
Rsr2I	CGGWCCG	1 cut(s)	685
RsrII	CGGWCCG	1 cut(s)	685
SacI	GAGCTC	1 cut(s)	858
SalI	GTCGAC	1 cut(s)	503
Sau3AI	GATC	1 cut(s)	657
SchI	GAGTC	2 cut(s)	536, 581
ScrFI	CCNGG	6 cut(s)	253, 314, 553, 584, 585, 689
SduI	GDGCHC	4 cut(s)	368, 553, 617, 858
SfaNI	GCATC	1 cut(s)	630
SfoI	GGCGCC	2 cut(s)	346, 898
SgrDI	CGTCGACG	1 cut(s)	503
SinI	GGWCC	8 cut(s)	100, 316, 424, 458, 685, 706, 778, 1035
SmaI	CCCGGG	1 cut(s)	585
SmiMI	CAYNNNNRTG	1 cut(s)	470
SmlI	CTYRAG	1 cut(s)	857
SmoI	CTYRAG	1 cut(s)	857
Sse9I	AATT	4 cut(s)	816, 923, 963, 984
SspDI	GGCGCC	2 cut(s)	344, 896
SstI	GAGCTC	1 cut(s)	858
StyD4I	CCNGG	6 cut(s)	251, 312, 551, 582, 583, 687
StyI	CCWWGG	2 cut(s)	678, 781
TaaI	ACNGT	2 cut(s)	89, 340
TaiI	ACGT	8 cut(s)	109, 306, 381, 405, 420, 449, 522, 1097
TaqI	TCGA	2 cut(s)	429, 504
TasI	AATT	4 cut(s)	816, 923, 963, 984
TauI	GCSGC	7 cut(s)	232, 350, 438, 531, 597, 696, 897
TfiI	GAWTC	1 cut(s)	787
TseFI	GTSAC	1 cut(s)	1090
TseI	GCWGC	5 cut(s)	30, 232, 491, 531, 877
Tsp45I	GTSAC	1 cut(s)	1090
TspGWI	ACGGA	1 cut(s)	522
TspMI	CCCGGG	1 cut(s)	583
Tth111I	GACNNNGTC	1 cut(s)	74
VpaK11BI	GGWCC	8 cut(s)	100, 316, 424, 458, 685, 706, 778, 1035
XmaI	CCCGGG	1 cut(s)	583
XmiI	GTMKAC	2 cut(s)	5, 504
XmnI	GAANNNNTTC	2 cut(s)	560, 1064
ZraI	GACGTC	1 cut(s)	403

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.