Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0010182

Physical Location & Seq

Genomic Coordinates Reverse (-)

62639809 .. 62640210

Gene Structure 402 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00127170.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 402 bp

ATGTCCACCACCGCAACGAGCTCAAAATCCACGGCGGAGCTAATCCCCTCCCTCCCATACGACGTCGCTTCGAACTGCCTAGCTTGGATCCCACATCACTACCACCCCGTCCTCTCAATCCTATCCAAACCTATCCGCTCTCTCCTCTCCTCCCCTTTCTTCTTCACCACCCGCTCCTCCTCAACTCCACCCAACACCTCCTCTACCTCACCCTCCGCTCTCCCGACCACCGCGCCACCTCGGTTCGCCCTCTACCAAAACCCCAACCCCCGAAACGACGTCATCCACCTCCTCGTCCCCATCCCTCCCGGTCCCCGTTCCCGCGGTCGGCGCCGCCTACGCCGTTGTCGGCTCCGAGATCTACGTCCTCGGTGGGTCCGTCAACAACGCGCTGTCCAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

F-box Kelch_1

Protein Analysis

133

Amino Acids

14.98

Weight (kDa)

11.85

Isoelectric Point (pI)

84.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0010182)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G77880 AT1G77880 AT1G77880 AT2G21950
fragaria_vesca	FvH4_1g22291 FvH4_1g22291
prunus_persica	Prupe.6G172900_v2.0.a1 Prupe.6G172900_v2.0.a1
pyrus_communis	pycom15g29250
rosa_chinensis	RchiOBHm_Chr2g0116481
rosa_laevigata	RLG00000018275 RLG00000018277
rosa_multiflora	Rmu_sc0004191.1_g000055 Rmu_sc0019528.1_g000002
rosa_roxburghii	Rroxscaffold_2G00127160 Rroxscaffold_2G00127170
rosa_rugosa	Rorug02G0206800 Rorug02G0206900
rosa_samantha	Rh2CG268600 Rh2DG288700
rosa_wichuraiana	Rw2G020610

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	2 cut(s)	66, 282
AccB1I	GGYRCC	1 cut(s)	330
AccBSI	CCGCTC	3 cut(s)	138, 174, 218
AccII	CGCG	3 cut(s)	233, 324, 390
AciI	CCGC	9 cut(s)	12, 35, 136, 172, 216, 231, 322, 324, 334
AclWI	GGATC	2 cut(s)	82, 95
AcyI	GRCGYC	3 cut(s)	63, 279, 331
AfiI	CCNNNNNNNGG	1 cut(s)	327
AluBI	AGCT	3 cut(s)	21, 40, 83
AluI	AGCT	3 cut(s)	21, 40, 83
Alw21I	GWGCWC	1 cut(s)	23
AlwI	GGATC	2 cut(s)	82, 95
AspLEI	GCGC	3 cut(s)	235, 333, 392
AspS9I	GGNCC	2 cut(s)	311, 376
AsuC2I	CCSGG	1 cut(s)	309
AsuHPI	GGTGA	2 cut(s)	157, 201
AsuII	TTCGAA	1 cut(s)	71
AvaII	GGWCC	2 cut(s)	311, 376
BamHI	GGATCC	1 cut(s)	87
BanI	GGYRCC	1 cut(s)	330
BanII	GRGCYC	1 cut(s)	23
Bbv12I	GWGCWC	1 cut(s)	23
BccI	CCATC	1 cut(s)	308
BceAI	ACGGC	2 cut(s)	48, 327
BcnI	CCSGG	1 cut(s)	309
BfaI	CTAG	1 cut(s)	80
BfoI	RGCGCY	1 cut(s)	334
BglII	AGATCT	1 cut(s)	358
BisI	GCNGC	1 cut(s)	334
BlsI	GCNGC	1 cut(s)	335
Bme1390I	CCNGG	1 cut(s)	309
Bme18I	GGWCC	2 cut(s)	311, 376
BmgT120I	GGNCC	2 cut(s)	311, 376
BmiI	GGNNCC	5 cut(s)	89, 313, 332, 353, 377
BmrFI	CCNGG	1 cut(s)	309
Bpu14I	TTCGAA	1 cut(s)	71
BpuMI	CCSGG	1 cut(s)	309
BsaHI	GRCGYC	3 cut(s)	63, 279, 331
BsaJI	CCNNGG	4 cut(s)	30, 239, 322, 368
Bsc4I	CCNNNNNNNGG	1 cut(s)	327
BseDI	CCNNGG	4 cut(s)	30, 239, 322, 368
BseGI	GGATG	2 cut(s)	282, 300
BseLI	CCNNNNNNNGG	1 cut(s)	327
BseRI	GAGGAG	6 cut(s)	134, 139, 166, 169, 190, 281
Bsh1236I	CGCG	3 cut(s)	233, 324, 390
Bsh1285I	CGRYCG	1 cut(s)	328
BshNI	GGYRCC	1 cut(s)	330
BsiEI	CGRYCG	1 cut(s)	328
BsiHKAI	GWGCWC	1 cut(s)	23
BsiSI	CCGG	1 cut(s)	309
BslFI	GGGAC	2 cut(s)	281, 297
BslI	CCNNNNNNNGG	1 cut(s)	327
BsmFI	GGGAC	2 cut(s)	281, 297
Bsp119I	TTCGAA	1 cut(s)	71
Bsp1286I	GDGCHC	1 cut(s)	23
Bsp143I	GATC	2 cut(s)	87, 358
BspACI	CCGC	9 cut(s)	12, 35, 136, 172, 216, 231, 322, 324, 334
BspFNI	CGCG	3 cut(s)	233, 324, 390
BspLI	GGNNCC	5 cut(s)	89, 313, 332, 353, 377
BspPI	GGATC	2 cut(s)	82, 95
BspT104I	TTCGAA	1 cut(s)	71
BspT107I	GGYRCC	1 cut(s)	330
BsrBI	CCGCTC	3 cut(s)	138, 174, 218
BssECI	CCNNGG	4 cut(s)	30, 239, 322, 368
BssMI	GATC	2 cut(s)	87, 358
BssNI	GRCGYC	3 cut(s)	63, 279, 331
BstACI	GRCGYC	3 cut(s)	63, 279, 331
BstBI	TTCGAA	1 cut(s)	71
BstDSI	CCRYGG	2 cut(s)	30, 322
BstF5I	GGATG	2 cut(s)	282, 300
BstFNI	CGCG	3 cut(s)	233, 324, 390
BstH2I	RGCGCY	1 cut(s)	334
BstHHI	GCGC	3 cut(s)	235, 333, 392
BstKTI	GATC	2 cut(s)	90, 361
BstMBI	GATC	2 cut(s)	87, 358
BstMCI	CGRYCG	1 cut(s)	328
BstMWI	GCNNNNNNNGC	2 cut(s)	330, 339
BstSCI	CCNGG	1 cut(s)	307
BstUI	CGCG	3 cut(s)	233, 324, 390
BstX2I	RGATCY	2 cut(s)	87, 358
BstYI	RGATCY	2 cut(s)	87, 358
BtgI	CCRYGG	2 cut(s)	30, 322
BtsCI	GGATG	2 cut(s)	282, 300
CfoI	GCGC	3 cut(s)	235, 333, 392
Cfr13I	GGNCC	2 cut(s)	311, 376
Cfr42I	CCGCGG	1 cut(s)	325
CviJI	RGCY	4 cut(s)	21, 40, 83, 352
CviKI_1	RGCY	4 cut(s)	21, 40, 83, 352
DinI	GGCGCC	1 cut(s)	332
DpnI	GATC	2 cut(s)	89, 360
DpnII	GATC	2 cut(s)	87, 358
EciI	GGCGGA	1 cut(s)	50
Ecl136II	GAGCTC	1 cut(s)	21
Eco24I	GRGCYC	1 cut(s)	23
Eco47I	GGWCC	2 cut(s)	311, 376
Eco53kI	GAGCTC	1 cut(s)	21
EcoICRI	GAGCTC	1 cut(s)	21
EcoT38I	GRGCYC	1 cut(s)	23
EgeI	GGCGCC	1 cut(s)	332
EheI	GGCGCC	1 cut(s)	332
FaiI	YATR	1 cut(s)	58
FaqI	GGGAC	2 cut(s)	281, 297
FauI	CCCGC	2 cut(s)	179, 329
Fnu4HI	GCNGC	1 cut(s)	334
FokI	GGATG	2 cut(s)	269, 287
FriOI	GRGCYC	1 cut(s)	23
Fsp4HI	GCNGC	1 cut(s)	334
FspBI	CTAG	1 cut(s)	80
GlaI	GCGC	3 cut(s)	234, 332, 391
GluI	GCNGC	1 cut(s)	334
HaeII	RGCGCY	1 cut(s)	334
HapII	CCGG	1 cut(s)	309
HhaI	GCGC	3 cut(s)	235, 333, 392
Hin1I	GRCGYC	3 cut(s)	63, 279, 331
Hin6I	GCGC	3 cut(s)	233, 331, 390
HinP1I	GCGC	3 cut(s)	233, 331, 390
HincII	GTYRAC	1 cut(s)	383
HindII	GTYRAC	1 cut(s)	383
HpaII	CCGG	1 cut(s)	309
HphI	GGTGA	2 cut(s)	157, 201
Hpy166II	GTNNAC	2 cut(s)	6, 383
Hpy188I	TCNGA	1 cut(s)	356
Hpy188III	TCNNGA	1 cut(s)	223
Hpy8I	GTNNAC	2 cut(s)	6, 383
Hpy99I	CGWCG	3 cut(s)	65, 68, 281
HpyCH4IV	ACGT	3 cut(s)	63, 279, 364
HpyF10VI	GCNNNNNNNGC	2 cut(s)	330, 339
HpySE526I	ACGT	3 cut(s)	63, 279, 364
Hsp92I	GRCGYC	3 cut(s)	63, 279, 331
HspAI	GCGC	3 cut(s)	233, 331, 390
KasI	GGCGCC	1 cut(s)	330
KspI	CCGCGG	1 cut(s)	325
Kzo9I	GATC	2 cut(s)	87, 358
LmnI	GCTCC	3 cut(s)	37, 179, 357
LpnPI	CCDG	1 cut(s)	322
MaeI	CTAG	1 cut(s)	80
MaeII	ACGT	3 cut(s)	63, 279, 364
MalI	GATC	2 cut(s)	89, 360
MbiI	CCGCTC	3 cut(s)	138, 174, 218
MboI	GATC	2 cut(s)	87, 358
MboII	GAAGA	2 cut(s)	151, 154
MflI	RGATCY	2 cut(s)	87, 358
MhlI	GDGCHC	1 cut(s)	23
Mly113I	GGCGCC	1 cut(s)	331
MspA1I	CMGCKG	1 cut(s)	324
MspI	CCGG	1 cut(s)	309
MspR9I	CCNGG	1 cut(s)	309
MvnI	CGCG	3 cut(s)	233, 324, 390
MwoI	GCNNNNNNNGC	2 cut(s)	330, 339
NarI	GGCGCC	1 cut(s)	331
NciI	CCSGG	1 cut(s)	309
NdeII	GATC	2 cut(s)	87, 358
NlaIV	GGNNCC	5 cut(s)	89, 313, 332, 353, 377
NspV	TTCGAA	1 cut(s)	71
PcsI	WCGNNNNNNNCGW	1 cut(s)	376
PkrI	GCNGC	1 cut(s)	335
PluTI	GGCGCC	1 cut(s)	334
Psp124BI	GAGCTC	1 cut(s)	23
PspN4I	GGNNCC	5 cut(s)	89, 313, 332, 353, 377
PspPI	GGNCC	2 cut(s)	311, 376
PsuI	RGATCY	2 cut(s)	87, 358
SacI	GAGCTC	1 cut(s)	23
SacII	CCGCGG	1 cut(s)	325
SatI	GCNGC	1 cut(s)	334
Sau3AI	GATC	2 cut(s)	87, 358
Sau96I	GGNCC	2 cut(s)	311, 376
ScrFI	CCNGG	1 cut(s)	309
SduI	GDGCHC	1 cut(s)	23
SfoI	GGCGCC	1 cut(s)	332
Sfr303I	CCGCGG	1 cut(s)	325
SfuI	TTCGAA	1 cut(s)	71
SgrBI	CCGCGG	1 cut(s)	325
SinI	GGWCC	2 cut(s)	311, 376
SsiI	CCGC	9 cut(s)	12, 35, 136, 172, 216, 231, 322, 324, 334
SspDI	GGCGCC	1 cut(s)	330
SspMI	CTAG	1 cut(s)	80
SstI	GAGCTC	1 cut(s)	23
StyD4I	CCNGG	1 cut(s)	307
TaiI	ACGT	3 cut(s)	66, 282, 367
TaqI	TCGA	1 cut(s)	71
TauI	GCSGC	1 cut(s)	336
TspGWI	ACGGA	1 cut(s)	368
VpaK11BI	GGWCC	2 cut(s)	311, 376
XspI	CTAG	1 cut(s)	80
ZraI	GACGTC	2 cut(s)	64, 280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.