AT1G78150

BEST Arabidopsis thaliana protein match is

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0011778
Physical Location & Seq
Forward (+)
29404648 .. 29406752
2105 bp
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UTR
Exon/CDS
Intron
AT1G78150.2

Sequence Viewer

Length: 825 bp
ATGGAGAGAAGTACTCCGGTGAGAAAGCCACACACATCGACCGCAGATCTACTTACTTGGTCGGAAGTTCCACCGCCGGATTCTCCTTCCTCCGCTTCTCGCTCCGCCGTTCGTTCCCACCAGCCATCGGATGGGATTAGCAAAGTGGTGTTTGGTGGTCAAGTCACCGATGAAGAAGTTGAGAGCTTGAACCGCAGGAAGCCTTGCTCAGAACATAAAATGAAGGAGATAACTGGCAGTGGGATCTTTTCTCGTAACGAAAAAGATGATGCGTCAGAGCCATTACCAGTTTATCAGCAAGCAGTTAATGGTATAAGCCAGATATCATTTGGTGAAGAGGAAAATCTATCTCCTAAAAAGCCGGCTACTGTACCTGAAGTGGCGAAACAGCGAGAGCTCAGTGGGACTATGGAGAATGAATCAGCTAATAAGCTACAGAAGCAGCTCTCTGATGCTAAATACAAAGAGATCAGTGGACAGAACATCTTTGCACCACCGCCTGAGATCAAACCTCGATCTGGAACTAATCGTGCATTGGCTCTTAAGGACAATTTCAACCTCGGAGCTGAATCTCAAACTGCTGAAGAAGACTCATCTGTGAAGACAGCAAAGAAGATTTATGACAAGAAATTCGCAGAACTTTCAGGAAACGACATATTCAAGGGAGATGCGGCGTCATCTAATGTTGAAAAGCATCTGAGTCAAGCGAAGCTAAAGGAGATAGGAGGAAACAACATATTTGCAGATGGGAAAGTAGAAGCAAGAGACTATTTAGGCGGTGTCCGTAAACCACCAGGTGGAGAGACAAGCATCGCACTTGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4057

Protein Analysis

274

Amino Acids

29.68

Weight (kDa)

6.18

Isoelectric Point (pI)

52.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4057 PF13266 3 - 272 1.8e-127 Protein of unknown function (DUF4057)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011778)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78150 AT1G78150 AT1G78150
fragaria_vesca FvH4_5g37630
malus_domestica MD08G1181800.v1.1 MD15G1367100.v1.1
prunus_persica Prupe.1G515000_v2.0.a1
pyrus_communis pycom08g15500 pycom15g32910
rosa_chinensis RchiOBHm_Chr7g0239311
rosa_laevigata RLG00000000764
rosa_multiflora Rmu_sc0007840.1_g000003
rosa_roxburghii Rroxscaffold_3G00221030
rosa_rugosa Rorug07G0327200
rosa_samantha Rh7AG480600 Rh7BG453300 Rh7CG498500 Rh7DG466600
rosa_wichuraiana Rw7G040260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 2 cut(s) 131, 797
AciI CCGC 8 cut(s) 42, 74, 93, 105, 193, 497, 671, 777
AclWI GGATC 1 cut(s) 251
AcsI RAATTY 1 cut(s) 629
AcuI CTGAAG 2 cut(s) 396, 603
AcyI GRCGYC 1 cut(s) 674
AdeI CACNNNGTG 1 cut(s) 797
AfaI GTAC 2 cut(s) 13, 372
AfiI CCNNNNNNNGG 4 cut(s) 127, 131, 518, 797
AflII CTTAAG 1 cut(s) 542
AgsI TTSAA 4 cut(s) 190, 556, 661, 689
AjnI CCWGG 1 cut(s) 793
AluBI AGCT 7 cut(s) 186, 397, 425, 433, 445, 566, 712
AluI AGCT 7 cut(s) 186, 397, 425, 433, 445, 566, 712
Alw21I GWGCWC 1 cut(s) 399
Alw26I GTCTC 2 cut(s) 759, 797
AlwI GGATC 1 cut(s) 251
ApeKI GCWGC 1 cut(s) 442
ApoI RAATTY 1 cut(s) 629
ArsI GACNNNNNNTTYG 2 cut(s) 614, 646
AsuHPI GGTGA 3 cut(s) 31, 157, 344
BanII GRGCYC 1 cut(s) 399
BbsI GAAGAC 2 cut(s) 594, 608
Bbv12I GWGCWC 1 cut(s) 399
BbvI GCAGC 1 cut(s) 454
BccI CCATC 3 cut(s) 125, 133, 740
BceAI ACGGC 1 cut(s) 92
BciT130I CCWGG 1 cut(s) 795
BcoDI GTCTC 2 cut(s) 759, 797
BfmI CTRYAG 1 cut(s) 434
BfrI CTTAAG 1 cut(s) 542
BglII AGATCT 1 cut(s) 46
BisI GCNGC 2 cut(s) 443, 672
BlsI GCNGC 2 cut(s) 444, 673
BmcAI AGTACT 1 cut(s) 13
Bme1390I CCNGG 1 cut(s) 795
BmrFI CCNGG 1 cut(s) 795
BmsI GCATC 5 cut(s) 259, 442, 658, 703, 819
BpiI GAAGAC 2 cut(s) 594, 608
BplI GAGNNNNNCTC 1 cut(s) 30
BsaHI GRCGYC 1 cut(s) 674
BsaJI CCNNGG 1 cut(s) 559
BsaWI WCCGGW 1 cut(s) 16
Bsc4I CCNNNNNNNGG 4 cut(s) 127, 131, 518, 797
Bse118I RCCGGY 1 cut(s) 361
Bse1I ACTGG 2 cut(s) 238, 287
BseBI CCWGG 1 cut(s) 795
BseDI CCNNGG 1 cut(s) 559
BseGI GGATG 1 cut(s) 136
BseLI CCNNNNNNNGG 4 cut(s) 127, 131, 518, 797
BseMII CTCAG 4 cut(s) 222, 412, 492, 689
BseNI ACTGG 2 cut(s) 238, 287
BseXI GCAGC 1 cut(s) 454
Bsh1285I CGRYCG 1 cut(s) 42
BsiEI CGRYCG 1 cut(s) 42
BsiHKAI GWGCWC 1 cut(s) 399
BsiSI CCGG 3 cut(s) 17, 77, 362
BslFI GGGAC 1 cut(s) 418
BslI CCNNNNNNNGG 4 cut(s) 127, 131, 518, 797
BsmAI GTCTC 2 cut(s) 759, 797
BsmFI GGGAC 1 cut(s) 418
Bsp1286I GDGCHC 1 cut(s) 399
Bsp143I GATC 5 cut(s) 46, 243, 468, 504, 515
BspACI CCGC 8 cut(s) 42, 74, 93, 105, 193, 497, 671, 777
BspCNI CTCAG 4 cut(s) 221, 411, 493, 690
BspPI GGATC 1 cut(s) 251
BspTI CTTAAG 1 cut(s) 542
BsrFI RCCGGY 1 cut(s) 361
BsrI ACTGG 2 cut(s) 238, 287
BssAI RCCGGY 1 cut(s) 361
BssECI CCNNGG 1 cut(s) 559
BssMI GATC 5 cut(s) 46, 243, 468, 504, 515
BssNI GRCGYC 1 cut(s) 674
Bst2UI CCWGG 1 cut(s) 795
Bst4CI ACNGT 1 cut(s) 370
Bst6I CTCTTC 1 cut(s) 330
BstACI GRCGYC 1 cut(s) 674
BstAFI CTTAAG 1 cut(s) 542
BstC8I GCNNGC 2 cut(s) 300, 363
BstDEI CTNAG 4 cut(s) 208, 398, 501, 698
BstF5I GGATG 1 cut(s) 136
BstKTI GATC 5 cut(s) 49, 246, 471, 507, 518
BstMAI GTCTC 2 cut(s) 759, 797
BstMBI GATC 5 cut(s) 46, 243, 468, 504, 515
BstMCI CGRYCG 1 cut(s) 42
BstMWI GCNNNNNNNGC 2 cut(s) 192, 439
BstNI CCWGG 1 cut(s) 795
BstSCI CCNGG 1 cut(s) 793
BstSFI CTRYAG 1 cut(s) 434
BstV1I GCAGC 1 cut(s) 454
BstV2I GAAGAC 2 cut(s) 594, 608
BstX2I RGATCY 2 cut(s) 46, 243
BstYI RGATCY 2 cut(s) 46, 243
BtgZI GCGATG 1 cut(s) 796
BtsCI GGATG 1 cut(s) 136
BtsI GCAGTG 1 cut(s) 244
BtsIMutI CAGTG 3 cut(s) 244, 406, 478
Cac8I GCNNGC 2 cut(s) 300, 363
Cfr10I RCCGGY 1 cut(s) 361
CseI GACGC 2 cut(s) 261, 663
CsiI ACCWGGT 1 cut(s) 793
Csp6I GTAC 2 cut(s) 12, 371
CviQI GTAC 2 cut(s) 12, 371
DdeI CTNAG 4 cut(s) 208, 398, 501, 698
DpnI GATC 5 cut(s) 48, 245, 470, 506, 517
DpnII GATC 5 cut(s) 46, 243, 468, 504, 515
DraIII CACNNNGTG 1 cut(s) 797
Eam1104I CTCTTC 1 cut(s) 330
EarI CTCTTC 1 cut(s) 330
EciI GGCGGA 1 cut(s) 94
Ecl136II GAGCTC 1 cut(s) 397
Eco24I GRGCYC 1 cut(s) 399
Eco32I GATATC 1 cut(s) 324
Eco53kI GAGCTC 1 cut(s) 397
Eco57I CTGAAG 2 cut(s) 396, 603
EcoICRI GAGCTC 1 cut(s) 397
EcoRII CCWGG 1 cut(s) 793
EcoRV GATATC 1 cut(s) 324
EcoT38I GRGCYC 1 cut(s) 399
FaiI YATR 6 cut(s) 216, 314, 410, 621, 656, 737
FaqI GGGAC 1 cut(s) 418
Fnu4HI GCNGC 2 cut(s) 443, 672
FokI GGATG 1 cut(s) 143
FriOI GRGCYC 1 cut(s) 399
Fsp4HI GCNGC 2 cut(s) 443, 672
GluI GCNGC 2 cut(s) 443, 672
HapII CCGG 3 cut(s) 17, 77, 362
HgaI GACGC 2 cut(s) 261, 663
Hin1I GRCGYC 1 cut(s) 674
HinfI GANTC 5 cut(s) 80, 419, 569, 590, 700
HpaII CCGG 3 cut(s) 17, 77, 362
HphI GGTGA 3 cut(s) 31, 157, 344
Hpy166II GTNNAC 2 cut(s) 476, 788
Hpy188I TCNGA 7 cut(s) 64, 130, 211, 277, 451, 563, 699
Hpy188III TCNNGA 2 cut(s) 519, 645
Hpy8I GTNNAC 2 cut(s) 476, 788
HpyAV CCTTC 2 cut(s) 96, 217
HpyCH4III ACNGT 1 cut(s) 370
HpyCH4V TGCA 3 cut(s) 491, 533, 743
HpyF10VI GCNNNNNNNGC 2 cut(s) 192, 439
HpyF3I CTNAG 4 cut(s) 208, 398, 501, 698
Hsp92I GRCGYC 1 cut(s) 674
KroI GCCGGC 1 cut(s) 361
KroNI GCCGGC 1 cut(s) 363
Kzo9I GATC 5 cut(s) 46, 243, 468, 504, 515
LmnI GCTCC 2 cut(s) 107, 563
Lsp1109I GCAGC 1 cut(s) 454
LweI GCATC 5 cut(s) 259, 442, 658, 703, 819
MabI ACCWGGT 1 cut(s) 793
MaeIII GTNAC 2 cut(s) 163, 254
MalI GATC 5 cut(s) 48, 245, 470, 506, 517
MboI GATC 5 cut(s) 46, 243, 468, 504, 515
MboII GAAGA 6 cut(s) 185, 347, 596, 599, 613, 625
MflI RGATCY 2 cut(s) 46, 243
MhlI GDGCHC 1 cut(s) 399
MluCI AATT 2 cut(s) 550, 629
MlyI GAGTC 2 cut(s) 584, 709
MmeI TCCRAC 1 cut(s) 42
MnlI CCTC 5 cut(s) 100, 331, 522, 569, 719
MroNI GCCGGC 1 cut(s) 361
MseI TTAA 3 cut(s) 306, 543, 823
MspCI CTTAAG 1 cut(s) 542
MspI CCGG 3 cut(s) 17, 77, 362
MspR9I CCNGG 1 cut(s) 795
MvaI CCWGG 1 cut(s) 795
MwoI GCNNNNNNNGC 2 cut(s) 192, 439
NaeI GCCGGC 1 cut(s) 363
NdeII GATC 5 cut(s) 46, 243, 468, 504, 515
NgoMIV GCCGGC 1 cut(s) 361
NmuCI GTSAC 1 cut(s) 163
PdiI GCCGGC 1 cut(s) 363
PfeI GAWTC 3 cut(s) 80, 419, 569
PflMI CCANNNNNTGG 2 cut(s) 131, 797
PkrI GCNGC 2 cut(s) 444, 673
PleI GAGTC 2 cut(s) 584, 708
PpsI GAGTC 2 cut(s) 584, 708
Psp124BI GAGCTC 1 cut(s) 399
Psp6I CCWGG 1 cut(s) 793
PspGI CCWGG 1 cut(s) 793
PsuI RGATCY 2 cut(s) 46, 243
RsaI GTAC 2 cut(s) 13, 372
RsaNI GTAC 2 cut(s) 12, 371
SacI GAGCTC 1 cut(s) 399
SaqAI TTAA 3 cut(s) 306, 543, 823
SatI GCNGC 2 cut(s) 443, 672
Sau3AI GATC 5 cut(s) 46, 243, 468, 504, 515
ScaI AGTACT 1 cut(s) 13
SchI GAGTC 2 cut(s) 584, 709
ScrFI CCNGG 1 cut(s) 795
SduI GDGCHC 1 cut(s) 399
SexAI ACCWGGT 1 cut(s) 793
SfaNI GCATC 5 cut(s) 259, 442, 658, 703, 819
SfcI CTRYAG 1 cut(s) 434
SmlI CTYRAG 1 cut(s) 542
SmoI CTYRAG 1 cut(s) 542
Sse9I AATT 2 cut(s) 550, 629
SsiI CCGC 8 cut(s) 42, 74, 93, 105, 193, 497, 671, 777
SstI GAGCTC 1 cut(s) 399
StyD4I CCNGG 1 cut(s) 793
TaaI ACNGT 1 cut(s) 370
TaqI TCGA 2 cut(s) 38, 514
TasI AATT 2 cut(s) 550, 629
TatI WGTACW 1 cut(s) 11
TauI GCSGC 1 cut(s) 674
TfiI GAWTC 3 cut(s) 80, 419, 569
Tru1I TTAA 3 cut(s) 306, 543, 823
Tru9I TTAA 3 cut(s) 306, 543, 823
TscAI CASTG 3 cut(s) 244, 406, 478
TseFI GTSAC 1 cut(s) 163
TseI GCWGC 1 cut(s) 442
Tsp45I GTSAC 1 cut(s) 163
TspDTI ATGAA 3 cut(s) 186, 236, 432
TspGWI ACGGA 1 cut(s) 773
TspRI CASTG 3 cut(s) 244, 406, 478
Van91I CCANNNNNTGG 2 cut(s) 131, 797
Vha464I CTTAAG 1 cut(s) 542
XapI RAATTY 1 cut(s) 629
XcmI CCANNNNNNNNNTGG 2 cut(s) 128, 326
ZrmI AGTACT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.