Rorug07G0327200

Protein of unknown function (DUF4057)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000007
OG0011778
Physical Location & Seq
Reverse (-)
35798117 .. 35799395
1279 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug07G0327200.1

Sequence Viewer

Length: 516 bp
ATGGGGAGTGGATCTGATCTGGGCTTGGGGCCGGGACTGGAGTATACATTCCTAATATTTGCTTCTCCAGTTGGTAATTATCACAAGGGAAGGGCAGCCCTCAATTTGTATGTTGAGCATAAAATCCACACAGCTATTCCTCGTGGAACTAGAGGTGTCAAGTCTGTCACCAATTACTCACCTTTAATGAAGCTACATTGTGATAGAGGTGTGTGTTGTATGTTTGATGTGATGGGGTTTGATATAGGAACTAGAGCAAACTGCATATATCCACTTCTTGGTGCATCTCTTTTGGGGTGGAGCTTTGTTGGGTCAGATATGACTGATGTAGCGGTAGAGTGGGCAGAAAAGAATGTTAGAGATAATCCGCATATCTCGGAACTTATTAAAATTCAAAAGGTAGAAAGTGGTGAAAACACCCTTCCAGCAGAAGGATCAAATAATGAGGCATTGGTTAGTACCAAAACCGAAATAGATCTGACTGAGGATATGGCAAGGGAAGGAATGCTCGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4057

Protein Analysis

171

Amino Acids

18.59

Weight (kDa)

5.32

Isoelectric Point (pI)

24.74

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Methyltransf_10 PF05971 77 - 142 1.1e-17 RNA methyltransferase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011778)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78150 AT1G78150 AT1G78150
fragaria_vesca FvH4_5g37630
malus_domestica MD08G1181800.v1.1 MD15G1367100.v1.1
prunus_persica Prupe.1G515000_v2.0.a1
pyrus_communis pycom08g15500 pycom15g32910
rosa_chinensis RchiOBHm_Chr7g0239311
rosa_laevigata RLG00000000764
rosa_multiflora Rmu_sc0007840.1_g000003
rosa_roxburghii Rroxscaffold_3G00221030
rosa_rugosa Rorug07G0327200
rosa_samantha Rh7AG480600 Rh7BG453300 Rh7CG498500 Rh7DG466600
rosa_wichuraiana Rw7G040260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 278
AccI GTMKAC 1 cut(s) 44
AciI CCGC 2 cut(s) 332, 368
AclWI GGATC 2 cut(s) 19, 442
AcsI RAATTY 1 cut(s) 390
AfaI GTAC 1 cut(s) 460
AfiI CCNNNNNNNGG 2 cut(s) 278, 431
AgsI TTSAA 1 cut(s) 395
AluBI AGCT 3 cut(s) 134, 193, 303
AluI AGCT 3 cut(s) 134, 193, 303
AlwI GGATC 2 cut(s) 19, 442
AoxI GGCC 1 cut(s) 29
ApeKI GCWGC 1 cut(s) 95
ApoI RAATTY 1 cut(s) 390
AspS9I GGNCC 1 cut(s) 29
AsuC2I CCSGG 1 cut(s) 33
AsuHPI GGTGA 3 cut(s) 160, 171, 422
BauI CACGAG 1 cut(s) 141
BbvI GCAGC 1 cut(s) 107
BccI CCATC 1 cut(s) 226
BcnI CCSGG 1 cut(s) 33
BfaI CTAG 2 cut(s) 150, 252
BglII AGATCT 1 cut(s) 475
BisI GCNGC 1 cut(s) 96
BlsI GCNGC 1 cut(s) 97
Bme1390I CCNGG 1 cut(s) 33
BmgT120I GGNCC 1 cut(s) 29
BmiI GGNNCC 1 cut(s) 30
BmrFI CCNGG 1 cut(s) 33
BmsI GCATC 1 cut(s) 293
BpmI CTGGAG 2 cut(s) 51, 59
BpuMI CCSGG 1 cut(s) 33
Bsc4I CCNNNNNNNGG 2 cut(s) 278, 431
Bse1I ACTGG 2 cut(s) 42, 68
BseLI CCNNNNNNNGG 2 cut(s) 278, 431
BseMII CTCAG 1 cut(s) 474
BseNI ACTGG 2 cut(s) 42, 68
BseXI GCAGC 1 cut(s) 107
BshFI GGCC 1 cut(s) 31
BsiSI CCGG 1 cut(s) 32
BslFI GGGAC 1 cut(s) 48
BslI CCNNNNNNNGG 2 cut(s) 278, 431
BsmFI GGGAC 1 cut(s) 48
BsmI GAATGC 1 cut(s) 510
BsnI GGCC 1 cut(s) 31
Bsp143I GATC 4 cut(s) 11, 16, 434, 475
BspACI CCGC 2 cut(s) 332, 368
BspANI GGCC 1 cut(s) 31
BspCNI CTCAG 1 cut(s) 475
BspLI GGNNCC 1 cut(s) 30
BspPI GGATC 2 cut(s) 19, 442
BsrI ACTGG 2 cut(s) 42, 68
BssMI GATC 4 cut(s) 11, 16, 434, 475
BssNAI GTATAC 1 cut(s) 45
BssSI CACGAG 1 cut(s) 141
Bst1107I GTATAC 1 cut(s) 45
Bst2BI CACGAG 1 cut(s) 141
BstDEI CTNAG 1 cut(s) 483
BstKTI GATC 4 cut(s) 14, 19, 437, 478
BstMBI GATC 4 cut(s) 11, 16, 434, 475
BstSCI CCNGG 1 cut(s) 31
BstV1I GCAGC 1 cut(s) 107
BstX2I RGATCY 2 cut(s) 11, 475
BstYI RGATCY 2 cut(s) 11, 475
BstZ17I GTATAC 1 cut(s) 45
BsuRI GGCC 1 cut(s) 31
Cfr13I GGNCC 1 cut(s) 29
Csp6I GTAC 1 cut(s) 459
CviJI RGCY 6 cut(s) 24, 31, 98, 134, 193, 303
CviKI_1 RGCY 6 cut(s) 24, 31, 98, 134, 193, 303
CviQI GTAC 1 cut(s) 459
DdeI CTNAG 1 cut(s) 483
DpnI GATC 4 cut(s) 13, 18, 436, 477
DpnII GATC 4 cut(s) 11, 16, 434, 475
FaqI GGGAC 1 cut(s) 48
FblI GTMKAC 1 cut(s) 44
Fnu4HI GCNGC 1 cut(s) 96
Fsp4HI GCNGC 1 cut(s) 96
FspBI CTAG 2 cut(s) 150, 252
GluI GCNGC 1 cut(s) 96
GsuI CTGGAG 2 cut(s) 51, 59
HaeIII GGCC 1 cut(s) 31
HapII CCGG 1 cut(s) 32
HpaII CCGG 1 cut(s) 32
HphI GGTGA 3 cut(s) 160, 171, 422
Hpy166II GTNNAC 1 cut(s) 45
Hpy188I TCNGA 5 cut(s) 16, 316, 379, 480, 515
Hpy8I GTNNAC 1 cut(s) 45
HpyAV CCTTC 4 cut(s) 84, 425, 431, 494
HpyCH4V TGCA 2 cut(s) 264, 284
HpyF3I CTNAG 1 cut(s) 483
Kzo9I GATC 4 cut(s) 11, 16, 434, 475
LmnI GCTCC 1 cut(s) 300
LpnPI CCDG 5 cut(s) 5, 23, 45, 81, 438
Lsp1109I GCAGC 1 cut(s) 107
LweI GCATC 1 cut(s) 293
MaeI CTAG 2 cut(s) 150, 252
MaeIII GTNAC 1 cut(s) 166
MalI GATC 4 cut(s) 13, 18, 436, 477
MboI GATC 4 cut(s) 11, 16, 434, 475
MflI RGATCY 2 cut(s) 11, 475
MluCI AATT 4 cut(s) 76, 103, 172, 390
MnlI CCTC 6 cut(s) 110, 146, 150, 200, 439, 478
MseI TTAA 2 cut(s) 185, 387
MspI CCGG 1 cut(s) 32
MspR9I CCNGG 1 cut(s) 33
Mva1269I GAATGC 1 cut(s) 510
NciI CCSGG 1 cut(s) 33
NdeII GATC 4 cut(s) 11, 16, 434, 475
NlaIV GGNNCC 1 cut(s) 30
NmuCI GTSAC 1 cut(s) 166
PctI GAATGC 1 cut(s) 510
PflMI CCANNNNNTGG 1 cut(s) 278
PkrI GCNGC 1 cut(s) 97
PspN4I GGNNCC 1 cut(s) 30
PspPI GGNCC 1 cut(s) 29
PsuI RGATCY 2 cut(s) 11, 475
RsaI GTAC 1 cut(s) 460
RsaNI GTAC 1 cut(s) 459
SaqAI TTAA 2 cut(s) 185, 387
SatI GCNGC 1 cut(s) 96
Sau3AI GATC 4 cut(s) 11, 16, 434, 475
Sau96I GGNCC 1 cut(s) 29
ScrFI CCNGG 1 cut(s) 33
SetI ASST 7 cut(s) 136, 157, 184, 195, 211, 305, 402
SfaNI GCATC 1 cut(s) 293
Sse9I AATT 4 cut(s) 76, 103, 172, 390
SsiI CCGC 2 cut(s) 332, 368
SspI AATATT 1 cut(s) 57
SspMI CTAG 2 cut(s) 150, 252
StyD4I CCNGG 1 cut(s) 31
TasI AATT 4 cut(s) 76, 103, 172, 390
Tru1I TTAA 2 cut(s) 185, 387
Tru9I TTAA 2 cut(s) 185, 387
TseFI GTSAC 1 cut(s) 166
TseI GCWGC 1 cut(s) 95
Tsp45I GTSAC 1 cut(s) 166
TspDTI ATGAA 1 cut(s) 203
Van91I CCANNNNNTGG 1 cut(s) 278
XapI RAATTY 1 cut(s) 390
XmiI GTMKAC 1 cut(s) 44
XspI CTAG 2 cut(s) 150, 252
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.