Prupe.1G515000_v2.0.a1

Protein of unknown function (DUF4057)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0011778
Physical Location & Seq
Forward (+)
42372752 .. 42375438
2687 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G515000.1

Sequence Viewer

Length: 927 bp
ATGGAGAGGAGCACGCCGGTGAGGAAGCCCCACACGTCCACCGCGGATCTGCTCACCTGGTCAGAGACTCCCCCTACTGACTCTCCTCTGCCCTCCTCCGCCTCTCGCTCTGCTACTCGCTCTCACCAGCCGTCGGATGGGATCAGAAAGGTGGTGTTTGGAGGTCAGGTGACGGACGAGGAGGTCGAGAGCTTGAACAAACGCAAACCTTGTTCAGGGTATAAGATGAAGGAGATGACTGGGAGTGGCATTTTTGCACCGAAGGCAGAAAATGATGCCTCAGAATCTGATGGTGCCAACCTTACCCCAAAACCCGCAATTCGTATGTACCAGCAAGCGGTTGCTGGAATCAGTCATATCTCATTTGGTGATGAAGAGGGTGTTTCTCCCAAAAAGCCTACAACCATTCCCGAAGTTGCAAAGCAGCGTGAGCTAAGTGGGACCTTGGAAAGTGAAGCAGAGAAAGAGGCAAGGCTGAAGAAGCAGCTCTCTGACTCTAAATTCAAGGAGCTTAGTGGGCATGACATATTTGCACCCCCTCCTGAAATTTTGCCCAGGACAACTACTGCTCCACGTGCATTGGCCTTGAAAGGAAGCATAGAGATAGGAGAACCTGCTTCCCCCAATGGTCACACATCTGTTAAGGTTTCTAATCCTGGTGGGGGTCAGAGCAATATAGCATCCAGTGAGGAACCTGCGTCCAAGACAGCTAAGAAGATTTATGAGAAGAAATTTTCTGAGCTCTCAGGAAATGATATATTCAAGGGTGATGTTCCTCCGTCGTCAGCTGAAAAACCACTGAGTAATGCAAAACTACGAGAGATGAGTGGCAGCAACATCTTTGCTGATGGGAAGGCAGAGGCTCGAGACTACTTAGGTGGTGTACGCAAACCCCCAGGTGGAGAGAGTAGCATTGCCTTGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4057

Protein Analysis

309

Amino Acids

32.74

Weight (kDa)

7.77

Isoelectric Point (pI)

53.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011778)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78150 AT1G78150 AT1G78150
fragaria_vesca FvH4_5g37630
malus_domestica MD08G1181800.v1.1 MD15G1367100.v1.1
prunus_persica Prupe.1G515000_v2.0.a1
pyrus_communis pycom08g15500 pycom15g32910
rosa_chinensis RchiOBHm_Chr7g0239311
rosa_laevigata RLG00000000764
rosa_multiflora Rmu_sc0007840.1_g000003
rosa_roxburghii Rroxscaffold_3G00221030
rosa_rugosa Rorug07G0327200
rosa_samantha Rh7AG480600 Rh7BG453300 Rh7CG498500 Rh7DG466600
rosa_wichuraiana Rw7G040260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 182
Acc36I ACCTGC 2 cut(s) 622, 703
AccB1I GGYRCC 1 cut(s) 293
AccII CGCG 1 cut(s) 44
AciI CCGC 5 cut(s) 42, 44, 99, 315, 338
AclWI GGATC 2 cut(s) 54, 149
AcsI RAATTY 3 cut(s) 500, 546, 731
AcuI CTGAAG 1 cut(s) 497
AcvI CACGTG 1 cut(s) 575
AfaI GTAC 2 cut(s) 329, 885
AfiI CCNNNNNNNGG 6 cut(s) 133, 137, 215, 337, 662, 899
AflIII ACRYGT 1 cut(s) 33
AgsI TTSAA 4 cut(s) 196, 505, 589, 763
AjiI CACGTC 1 cut(s) 36
AjnI CCWGG 4 cut(s) 56, 554, 655, 895
AleI CACNNNNGTG 1 cut(s) 17
AluBI AGCT 7 cut(s) 192, 433, 487, 511, 710, 742, 788
AluI AGCT 7 cut(s) 192, 433, 487, 511, 710, 742, 788
Alw21I GWGCWC 2 cut(s) 14, 744
Alw26I GTCTC 2 cut(s) 59, 861
AlwI GGATC 2 cut(s) 54, 149
AlwNI CAGNNNCTG 1 cut(s) 287
Ama87I CYCGRG 1 cut(s) 864
AoxI GGCC 1 cut(s) 582
ApeKI GCWGC 3 cut(s) 424, 484, 831
ApoI RAATTY 3 cut(s) 500, 546, 731
AspS9I GGNCC 1 cut(s) 441
AsuHPI GGTGA 6 cut(s) 31, 46, 116, 181, 380, 779
AvaI CYCGRG 1 cut(s) 864
AvaII GGWCC 1 cut(s) 441
BanI GGYRCC 1 cut(s) 293
BanII GRGCYC 1 cut(s) 744
BbrPI CACGTG 1 cut(s) 575
Bbv12I GWGCWC 2 cut(s) 14, 744
BbvI GCAGC 3 cut(s) 436, 496, 843
BccI CCATC 3 cut(s) 131, 284, 842
BceAI ACGGC 1 cut(s) 115
BciT130I CCWGG 4 cut(s) 58, 556, 657, 897
BcoDI GTCTC 2 cut(s) 59, 861
BfuAI ACCTGC 2 cut(s) 622, 703
BisI GCNGC 3 cut(s) 425, 485, 832
BlsI GCNGC 3 cut(s) 426, 486, 833
Bme1390I CCNGG 4 cut(s) 58, 556, 657, 897
Bme18I GGWCC 1 cut(s) 441
BmeT110I CYCGRG 1 cut(s) 864
BmgBI CACGTC 1 cut(s) 36
BmgT120I GGNCC 1 cut(s) 441
BmiI GGNNCC 3 cut(s) 295, 442, 693
BmrFI CCNGG 4 cut(s) 58, 556, 657, 897
BmrI ACTGGG 1 cut(s) 249
BmsI GCATC 2 cut(s) 265, 689
BmuI ACTGGG 1 cut(s) 249
BsaAI YACGTR 1 cut(s) 575
BsaJI CCNNGG 5 cut(s) 42, 444, 554, 895, 918
BsaXI ACNNNNNCTCC 6 cut(s) 67, 97, 153, 183, 553, 583
Bsc4I CCNNNNNNNGG 6 cut(s) 133, 137, 215, 337, 662, 899
Bse118I RCCGGY 1 cut(s) 16
Bse1I ACTGG 2 cut(s) 244, 684
Bse3DI GCAATG 1 cut(s) 912
BseBI CCWGG 4 cut(s) 58, 556, 657, 897
BseDI CCNNGG 5 cut(s) 42, 444, 554, 895, 918
BseGI GGATG 2 cut(s) 142, 680
BseLI CCNNNNNNNGG 6 cut(s) 133, 137, 215, 337, 662, 899
BseMI GCAATG 1 cut(s) 912
BseMII CTCAG 4 cut(s) 294, 729, 759, 791
BseNI ACTGG 2 cut(s) 244, 684
BseRI GAGGAG 4 cut(s) 22, 75, 85, 194
BseXI GCAGC 3 cut(s) 436, 496, 843
Bsh1236I CGCG 1 cut(s) 44
BshFI GGCC 1 cut(s) 584
BshNI GGYRCC 1 cut(s) 293
BsiHKAI GWGCWC 2 cut(s) 14, 744
BsiHKCI CYCGRG 1 cut(s) 864
BsiSI CCGG 1 cut(s) 17
BslFI GGGAC 1 cut(s) 454
BslI CCNNNNNNNGG 6 cut(s) 133, 137, 215, 337, 662, 899
BsmAI GTCTC 2 cut(s) 59, 861
BsmFI GGGAC 1 cut(s) 454
BsnI GGCC 1 cut(s) 584
BsoBI CYCGRG 1 cut(s) 864
Bsp1286I GDGCHC 2 cut(s) 14, 744
Bsp143I GATC 2 cut(s) 46, 141
BspACI CCGC 5 cut(s) 42, 44, 99, 315, 338
BspANI GGCC 1 cut(s) 584
BspCNI CTCAG 4 cut(s) 293, 730, 758, 792
BspFNI CGCG 1 cut(s) 44
BspLI GGNNCC 3 cut(s) 295, 442, 693
BspMI ACCTGC 2 cut(s) 622, 703
BspPI GGATC 2 cut(s) 54, 149
BspT107I GGYRCC 1 cut(s) 293
BsrDI GCAATG 1 cut(s) 912
BsrFI RCCGGY 1 cut(s) 16
BsrI ACTGG 2 cut(s) 244, 684
BssAI RCCGGY 1 cut(s) 16
BssECI CCNNGG 5 cut(s) 42, 444, 554, 895, 918
BssMI GATC 2 cut(s) 46, 141
BssT1I CCWWGG 2 cut(s) 444, 918
Bst2UI CCWGG 4 cut(s) 58, 556, 657, 897
Bst6I CTCTTC 1 cut(s) 369
BstBAI YACGTR 1 cut(s) 575
BstC8I GCNNGC 2 cut(s) 14, 336
BstDEI CTNAG 8 cut(s) 280, 434, 512, 711, 738, 745, 800, 874
BstDSI CCRYGG 1 cut(s) 42
BstENI CCTNNNNNAGG 1 cut(s) 213
BstF5I GGATG 2 cut(s) 142, 680
BstFNI CGCG 1 cut(s) 44
BstKTI GATC 2 cut(s) 49, 144
BstMAI GTCTC 2 cut(s) 59, 861
BstMBI GATC 2 cut(s) 46, 141
BstMWI GCNNNNNNNGC 5 cut(s) 263, 430, 481, 517, 575
BstNI CCWGG 4 cut(s) 58, 556, 657, 897
BstSCI CCNGG 4 cut(s) 56, 554, 655, 895
BstUI CGCG 1 cut(s) 44
BstV1I GCAGC 3 cut(s) 436, 496, 843
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
BsuRI GGCC 1 cut(s) 584
BtgI CCRYGG 1 cut(s) 42
BtrI CACGTC 1 cut(s) 36
BtsCI GGATG 2 cut(s) 142, 680
BtsIMutI CAGTG 2 cut(s) 691, 797
BveI ACCTGC 2 cut(s) 622, 703
Cac8I GCNNGC 2 cut(s) 14, 336
CaiI CAGNNNCTG 1 cut(s) 287
Cfr10I RCCGGY 1 cut(s) 16
Cfr13I GGNCC 1 cut(s) 441
Cfr42I CCGCGG 1 cut(s) 45
CseI GACGC 1 cut(s) 687
CsiI ACCWGGT 1 cut(s) 56
Csp6I GTAC 2 cut(s) 328, 884
CspCI CAANNNNNGTGG 2 cut(s) 561, 596
CviAII CATG 1 cut(s) 521
CviQI GTAC 2 cut(s) 328, 884
DdeI CTNAG 8 cut(s) 280, 434, 512, 711, 738, 745, 800, 874
DpnI GATC 2 cut(s) 48, 143
DpnII GATC 2 cut(s) 46, 141
DrdI GACNNNNNNGTC 1 cut(s) 182
DseDI GACNNNNNNGTC 1 cut(s) 182
Eam1104I CTCTTC 1 cut(s) 369
EarI CTCTTC 1 cut(s) 369
EciI GGCGGA 1 cut(s) 88
Ecl136II GAGCTC 1 cut(s) 742
Eco130I CCWWGG 2 cut(s) 444, 918
Eco24I GRGCYC 1 cut(s) 744
Eco47I GGWCC 1 cut(s) 441
Eco53kI GAGCTC 1 cut(s) 742
Eco57I CTGAAG 1 cut(s) 497
Eco72I CACGTG 1 cut(s) 575
Eco88I CYCGRG 1 cut(s) 864
EcoICRI GAGCTC 1 cut(s) 742
EcoNI CCTNNNNNAGG 1 cut(s) 213
EcoO109I RGGNCCY 1 cut(s) 441
EcoRII CCWGG 4 cut(s) 56, 554, 655, 895
EcoT14I CCWWGG 2 cut(s) 444, 918
EcoT38I GRGCYC 1 cut(s) 744
ErhI CCWWGG 2 cut(s) 444, 918
FaeI CATG 1 cut(s) 524
FaiI YATR 9 cut(s) 222, 326, 357, 522, 527, 599, 677, 723, 758
FaqI GGGAC 1 cut(s) 454
FatI CATG 1 cut(s) 520
FauI CCCGC 1 cut(s) 322
Fnu4HI GCNGC 3 cut(s) 425, 485, 832
FokI GGATG 2 cut(s) 149, 667
FriOI GRGCYC 1 cut(s) 744
Fsp4HI GCNGC 3 cut(s) 425, 485, 832
GluI GCNGC 3 cut(s) 425, 485, 832
HaeIII GGCC 1 cut(s) 584
HapII CCGG 1 cut(s) 17
HgaI GACGC 1 cut(s) 687
Hin1II CATG 1 cut(s) 524
HinfI GANTC 5 cut(s) 67, 80, 284, 348, 494
HpaII CCGG 1 cut(s) 17
HphI GGTGA 6 cut(s) 31, 46, 116, 181, 380, 779
Hpy166II GTNNAC 2 cut(s) 39, 884
Hpy188I TCNGA 8 cut(s) 64, 136, 146, 283, 289, 493, 669, 739
Hpy188III TCNNGA 5 cut(s) 187, 410, 542, 747, 866
Hpy8I GTNNAC 2 cut(s) 39, 884
Hpy99I CGWCG 2 cut(s) 136, 784
HpyAV CCTTC 3 cut(s) 223, 256, 847
HpyCH4IV ACGT 2 cut(s) 35, 574
HpyCH4V TGCA 5 cut(s) 257, 419, 533, 578, 809
HpyF10VI GCNNNNNNNGC 5 cut(s) 263, 430, 481, 517, 575
HpyF3I CTNAG 8 cut(s) 280, 434, 512, 711, 738, 745, 800, 874
HpySE526I ACGT 2 cut(s) 35, 574
Hsp92II CATG 1 cut(s) 524
KspI CCGCGG 1 cut(s) 45
Kzo9I GATC 2 cut(s) 46, 141
LmnI GCTCC 3 cut(s) 9, 508, 574
Lsp1109I GCAGC 3 cut(s) 436, 496, 843
LweI GCATC 2 cut(s) 265, 689
MabI ACCWGGT 1 cut(s) 56
MaeII ACGT 2 cut(s) 35, 574
MaeIII GTNAC 2 cut(s) 169, 629
MalI GATC 2 cut(s) 48, 143
MboI GATC 2 cut(s) 46, 141
MboII GAAGA 4 cut(s) 386, 490, 727, 739
MflI RGATCY 1 cut(s) 46
MhlI GDGCHC 2 cut(s) 14, 744
MluCI AATT 4 cut(s) 318, 500, 546, 731
MlyI GAGTC 3 cut(s) 61, 74, 488
MmeI TCCRAC 1 cut(s) 114
MseI TTAA 2 cut(s) 642, 925
MslI CAYNNNNRTG 1 cut(s) 17
MspA1I CMGCKG 2 cut(s) 44, 788
MspI CCGG 1 cut(s) 17
MspR9I CCNGG 4 cut(s) 58, 556, 657, 897
MvaI CCWGG 4 cut(s) 58, 556, 657, 897
MvnI CGCG 1 cut(s) 44
MwoI GCNNNNNNNGC 5 cut(s) 263, 430, 481, 517, 575
NdeII GATC 2 cut(s) 46, 141
NlaIII CATG 1 cut(s) 524
NlaIV GGNNCC 3 cut(s) 295, 442, 693
NmuCI GTSAC 2 cut(s) 169, 629
OliI CACNNNNGTG 1 cut(s) 17
PaeR7I CTCGAG 1 cut(s) 864
PcsI WCGNNNNNNNCGW 1 cut(s) 183
PfeI GAWTC 2 cut(s) 284, 348
PkrI GCNGC 3 cut(s) 426, 486, 833
PleI GAGTC 3 cut(s) 61, 74, 488
PmaCI CACGTG 1 cut(s) 575
PmlI CACGTG 1 cut(s) 575
PpsI GAGTC 3 cut(s) 61, 74, 488
Ppu21I YACGTR 1 cut(s) 575
PpuMI RGGWCCY 1 cut(s) 441
Psp124BI GAGCTC 1 cut(s) 744
Psp5II RGGWCCY 1 cut(s) 441
Psp6I CCWGG 4 cut(s) 56, 554, 655, 895
PspCI CACGTG 1 cut(s) 575
PspGI CCWGG 4 cut(s) 56, 554, 655, 895
PspN4I GGNNCC 3 cut(s) 295, 442, 693
PspPI GGNCC 1 cut(s) 441
PspPPI RGGWCCY 1 cut(s) 441
PstNI CAGNNNCTG 1 cut(s) 287
PsuI RGATCY 1 cut(s) 46
PvuII CAGCTG 1 cut(s) 788
RsaI GTAC 2 cut(s) 329, 885
RsaNI GTAC 2 cut(s) 328, 884
RseI CAYNNNNRTG 1 cut(s) 17
SacI GAGCTC 1 cut(s) 744
SacII CCGCGG 1 cut(s) 45
SaqAI TTAA 2 cut(s) 642, 925
SatI GCNGC 3 cut(s) 425, 485, 832
Sau3AI GATC 2 cut(s) 46, 141
Sau96I GGNCC 1 cut(s) 441
SchI GAGTC 3 cut(s) 61, 74, 488
ScrFI CCNGG 4 cut(s) 58, 556, 657, 897
SduI GDGCHC 2 cut(s) 14, 744
SexAI ACCWGGT 1 cut(s) 56
SfaNI GCATC 2 cut(s) 265, 689
Sfr274I CTCGAG 1 cut(s) 864
Sfr303I CCGCGG 1 cut(s) 45
SgrAI CRCCGGYG 1 cut(s) 16
SgrBI CCGCGG 1 cut(s) 45
SinI GGWCC 1 cut(s) 441
SlaI CTCGAG 1 cut(s) 864
SmiMI CAYNNNNRTG 1 cut(s) 17
SmlI CTYRAG 1 cut(s) 864
SmoI CTYRAG 1 cut(s) 864
Sse9I AATT 4 cut(s) 318, 500, 546, 731
SsiI CCGC 5 cut(s) 42, 44, 99, 315, 338
SstI GAGCTC 1 cut(s) 744
StyD4I CCNGG 4 cut(s) 56, 554, 655, 895
StyI CCWWGG 2 cut(s) 444, 918
TaiI ACGT 2 cut(s) 38, 577
TaqI TCGA 2 cut(s) 186, 865
TasI AATT 4 cut(s) 318, 500, 546, 731
TfiI GAWTC 2 cut(s) 284, 348
Tru1I TTAA 2 cut(s) 642, 925
Tru9I TTAA 2 cut(s) 642, 925
TscAI CASTG 2 cut(s) 691, 804
TseFI GTSAC 2 cut(s) 169, 629
TseI GCWGC 3 cut(s) 424, 484, 831
Tsp45I GTSAC 2 cut(s) 169, 629
TspDTI ATGAA 2 cut(s) 242, 387
TspGWI ACGGA 2 cut(s) 188, 768
TspRI CASTG 2 cut(s) 691, 804
VpaK11BI GGWCC 1 cut(s) 441
XagI CCTNNNNNAGG 1 cut(s) 213
XapI RAATTY 3 cut(s) 500, 546, 731
XcmI CCANNNNNNNNNTGG 1 cut(s) 134
XhoI CTCGAG 1 cut(s) 864
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.