FvH4_5g37630

Protein of unknown function (DUF4057)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
OG0011778
Physical Location & Seq
Reverse (-)
27695008 .. 27697687
2680 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g37630.t1

Sequence Viewer

Length: 906 bp
ATGAGCACTCCGGTGAGGAAGTCCCACACATCCACCGCGGATCTGCTCACCTGGTCCGAGACTCCGATTGCCGACTCCCCGGCGCTCCCCTCTTCCGCTACTCGGCCTCACCAGCCGTCGGATGGGATCAGAAAGGTGGTGTTTGGAGGTCAGGTGACGGATGAGGAGGTCGAGAGCTTAAACAAACGAAAACCTTGTTCAGGGTACAAGATGAAGGAGATGACTGGGAGTGGCATTTTTGCTGGGGGAGCTGACGATGAAGCATCAGAACCTGGTAGTGCTAATCCTACCCCAAATAGCAAAAGTGGAATCCGACTGTACCAGCAAGCGGTTGCTGGAATCAGTCATATCTCATTTGGTGAGGAAGAGGGTGTTACTCCCAAAAAGCCTACTACAATTGCTGAAGTCGCAAAGCTGCGAGAGCTGAGTGGAACCTTGGAAACTGAGGCAGAGGCAGAGGCAAGGCTGAAGAAGCAGCTTTCAGAGTCTAAATATAAGGAGCTCAGTGGGCATGACATATTTGCACCCCCACCTGAAATTTTACCTAGGGAAACTACTGCTCCACGACAACTGGCTTTGAAAGGGAGCATTCAAATAGGAGAACCTACTTCACCCGTATACGAGTCTGCTAAGTCTACTGGAGGTCAGATCAATGTTATACCGGGTGAGGACCCTGTGTCCAAGACGGCGAAGAAGATTTATGAGAAGAAATTTTCCGAGCTGTCAGGAAACGACATATTCAAGGGCGATGTTCCTCCGTCCTCTGCTGAGAAACCACTGAGTGTGGCAAAACTGCGGGAGATGAGTGGCAGCAACATCTTTGCCGACGGGAAGGCAGAGGCTCGAGAATATTTGGGTGGCGTACGCAAACCCCCTGGTGGCGAGAGCAGCATTGCCTTGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4057

Protein Analysis

302

Amino Acids

31.95

Weight (kDa)

5.96

Isoelectric Point (pI)

41.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4057 PF13266 2 - 299 3.6e-142 Protein of unknown function (DUF4057)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011778)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78150 AT1G78150 AT1G78150
fragaria_vesca FvH4_5g37630
malus_domestica MD08G1181800.v1.1 MD15G1367100.v1.1
prunus_persica Prupe.1G515000_v2.0.a1
pyrus_communis pycom08g15500 pycom15g32910
rosa_chinensis RchiOBHm_Chr7g0239311
rosa_laevigata RLG00000000764
rosa_multiflora Rmu_sc0007840.1_g000003
rosa_roxburghii Rroxscaffold_3G00221030
rosa_rugosa Rorug07G0327200
rosa_samantha Rh7AG480600 Rh7BG453300 Rh7CG498500 Rh7DG466600
rosa_wichuraiana Rw7G040260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 618, 635
AccII CGCG 1 cut(s) 38
AciI CCGC 5 cut(s) 36, 38, 96, 329, 796
AclWI GGATC 2 cut(s) 48, 134
AcsI RAATTY 2 cut(s) 537, 710
AcuI CTGAAG 2 cut(s) 423, 488
AdeI CACNNNGTG 1 cut(s) 782
AfaI GTAC 3 cut(s) 206, 320, 864
AfiI CCNNNNNNNGG 6 cut(s) 102, 118, 122, 200, 328, 878
AgsI TTSAA 3 cut(s) 580, 593, 742
AhdI GACNNNNNGTC 1 cut(s) 676
AjnI CCWGG 3 cut(s) 50, 271, 874
AleI CACNNNNGTG 1 cut(s) 11
AluBI AGCT 7 cut(s) 177, 251, 415, 424, 478, 502, 721
AluI AGCT 7 cut(s) 177, 251, 415, 424, 478, 502, 721
Alw21I GWGCWC 2 cut(s) 8, 504
Alw26I GTCTC 1 cut(s) 53
AlwI GGATC 2 cut(s) 48, 134
AlwNI CAGNNNCTG 1 cut(s) 272
Ama87I CYCGRG 1 cut(s) 843
AoxI GGCC 1 cut(s) 104
ApeKI GCWGC 4 cut(s) 415, 475, 810, 888
ApoI RAATTY 2 cut(s) 537, 710
AspA2I CCTAGG 1 cut(s) 545
AspLEI GCGC 1 cut(s) 85
AspS9I GGNCC 2 cut(s) 54, 670
AsuC2I CCSGG 2 cut(s) 80, 663
AsuHPI GGTGA 7 cut(s) 25, 40, 101, 166, 371, 603, 677
AvaI CYCGRG 1 cut(s) 843
AvaII GGWCC 2 cut(s) 54, 670
AvrII CCTAGG 1 cut(s) 545
BanII GRGCYC 1 cut(s) 504
Bbv12I GWGCWC 2 cut(s) 8, 504
BbvI GCAGC 4 cut(s) 402, 487, 822, 900
BccI CCATC 1 cut(s) 116
BceAI ACGGC 2 cut(s) 100, 702
BciT130I CCWGG 3 cut(s) 52, 273, 876
BcnI CCSGG 2 cut(s) 80, 663
BcoDI GTCTC 1 cut(s) 53
BfaI CTAG 1 cut(s) 546
BfoI RGCGCY 1 cut(s) 86
BisI GCNGC 4 cut(s) 416, 476, 811, 889
BlnI CCTAGG 1 cut(s) 545
BlsI GCNGC 4 cut(s) 417, 477, 812, 890
Bme1390I CCNGG 5 cut(s) 52, 80, 273, 663, 876
Bme18I GGWCC 2 cut(s) 54, 670
BmeRI GACNNNNNGTC 1 cut(s) 676
BmeT110I CYCGRG 1 cut(s) 843
BmgT120I GGNCC 2 cut(s) 54, 670
BmiI GGNNCC 2 cut(s) 433, 672
BmrFI CCNGG 5 cut(s) 52, 80, 273, 663, 876
BmrI ACTGGG 1 cut(s) 234
BmsI GCATC 1 cut(s) 272
BmuI ACTGGG 1 cut(s) 234
BpmI CTGGAG 1 cut(s) 660
BpuMI CCSGG 2 cut(s) 80, 663
BsaJI CCNNGG 6 cut(s) 36, 78, 435, 545, 874, 897
BsaWI WCCGGW 1 cut(s) 10
BsaXI ACNNNNNCTCC 4 cut(s) 138, 168, 544, 574
Bsc4I CCNNNNNNNGG 6 cut(s) 102, 118, 122, 200, 328, 878
Bse1I ACTGG 3 cut(s) 229, 576, 643
Bse3DI GCAATG 1 cut(s) 891
BseBI CCWGG 3 cut(s) 52, 273, 876
BseDI CCNNGG 6 cut(s) 36, 78, 435, 545, 874, 897
BseGI GGATG 3 cut(s) 29, 127, 166
BseLI CCNNNNNNNGG 6 cut(s) 102, 118, 122, 200, 328, 878
BseMI GCAATG 1 cut(s) 891
BseMII CTCAG 5 cut(s) 416, 435, 517, 759, 770
BseNI ACTGG 3 cut(s) 229, 576, 643
BseRI GAGGAG 1 cut(s) 179
BseXI GCAGC 4 cut(s) 402, 487, 822, 900
BseYI CCCAGC 1 cut(s) 242
Bsh1236I CGCG 1 cut(s) 38
BshFI GGCC 1 cut(s) 106
BsiHKAI GWGCWC 2 cut(s) 8, 504
BsiHKCI CYCGRG 1 cut(s) 843
BsiSI CCGG 3 cut(s) 11, 80, 662
BsiWI CGTACG 1 cut(s) 862
BslFI GGGAC 1 cut(s) 7
BslI CCNNNNNNNGG 6 cut(s) 102, 118, 122, 200, 328, 878
BsmAI GTCTC 1 cut(s) 53
BsmFI GGGAC 1 cut(s) 7
BsmI GAATGC 1 cut(s) 588
BsnI GGCC 1 cut(s) 106
BsoBI CYCGRG 1 cut(s) 843
Bsp1286I GDGCHC 2 cut(s) 8, 504
Bsp143I GATC 3 cut(s) 40, 126, 648
BspACI CCGC 5 cut(s) 36, 38, 96, 329, 796
BspANI GGCC 1 cut(s) 106
BspCNI CTCAG 5 cut(s) 417, 436, 516, 760, 771
BspFNI CGCG 1 cut(s) 38
BspLI GGNNCC 2 cut(s) 433, 672
BspPI GGATC 2 cut(s) 48, 134
BsrDI GCAATG 1 cut(s) 891
BsrI ACTGG 3 cut(s) 229, 576, 643
BssECI CCNNGG 6 cut(s) 36, 78, 435, 545, 874, 897
BssMI GATC 3 cut(s) 40, 126, 648
BssNAI GTATAC 1 cut(s) 619
BssT1I CCWWGG 3 cut(s) 435, 545, 897
Bst1107I GTATAC 1 cut(s) 619
Bst2UI CCWGG 3 cut(s) 52, 273, 876
Bst4CI ACNGT 1 cut(s) 318
Bst6I CTCTTC 2 cut(s) 97, 360
BstC8I GCNNGC 1 cut(s) 327
BstDEI CTNAG 6 cut(s) 425, 444, 503, 630, 768, 779
BstDSI CCRYGG 1 cut(s) 36
BstENI CCTNNNNNAGG 1 cut(s) 198
BstF5I GGATG 3 cut(s) 29, 127, 166
BstFNI CGCG 1 cut(s) 38
BstH2I RGCGCY 1 cut(s) 86
BstHHI GCGC 1 cut(s) 85
BstKTI GATC 3 cut(s) 43, 129, 651
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 3 cut(s) 40, 126, 648
BstMWI GCNNNNNNNGC 7 cut(s) 112, 248, 407, 421, 472, 508, 888
BstNI CCWGG 3 cut(s) 52, 273, 876
BstSCI CCNGG 5 cut(s) 50, 78, 271, 661, 874
BstUI CGCG 1 cut(s) 38
BstV1I GCAGC 4 cut(s) 402, 487, 822, 900
BstX2I RGATCY 1 cut(s) 40
BstYI RGATCY 1 cut(s) 40
BstZ17I GTATAC 1 cut(s) 619
BsuRI GGCC 1 cut(s) 106
BtgI CCRYGG 1 cut(s) 36
BtgZI GCGATG 1 cut(s) 762
BtsCI GGATG 3 cut(s) 29, 127, 166
BtsIMutI CAGTG 2 cut(s) 511, 776
Cac8I GCNNGC 1 cut(s) 327
CaiI CAGNNNCTG 1 cut(s) 272
CfoI GCGC 1 cut(s) 85
Cfr13I GGNCC 2 cut(s) 54, 670
Cfr42I CCGCGG 1 cut(s) 39
CsiI ACCWGGT 2 cut(s) 50, 271
Csp6I GTAC 3 cut(s) 205, 319, 863
CviAII CATG 1 cut(s) 512
CviQI GTAC 3 cut(s) 205, 319, 863
DdeI CTNAG 6 cut(s) 425, 444, 503, 630, 768, 779
DpnI GATC 3 cut(s) 42, 128, 650
DpnII GATC 3 cut(s) 40, 126, 648
DraIII CACNNNGTG 1 cut(s) 782
DriI GACNNNNNGTC 1 cut(s) 676
Eam1104I CTCTTC 2 cut(s) 97, 360
Eam1105I GACNNNNNGTC 1 cut(s) 676
EarI CTCTTC 2 cut(s) 97, 360
Ecl136II GAGCTC 1 cut(s) 502
Eco130I CCWWGG 3 cut(s) 435, 545, 897
Eco24I GRGCYC 1 cut(s) 504
Eco47I GGWCC 2 cut(s) 54, 670
Eco53kI GAGCTC 1 cut(s) 502
Eco57I CTGAAG 2 cut(s) 423, 488
Eco88I CYCGRG 1 cut(s) 843
EcoICRI GAGCTC 1 cut(s) 502
EcoNI CCTNNNNNAGG 1 cut(s) 198
EcoO109I RGGNCCY 1 cut(s) 670
EcoRII CCWGG 3 cut(s) 50, 271, 874
EcoT14I CCWWGG 3 cut(s) 435, 545, 897
EcoT38I GRGCYC 1 cut(s) 504
ErhI CCWWGG 3 cut(s) 435, 545, 897
FaeI CATG 1 cut(s) 515
FaiI YATR 8 cut(s) 348, 495, 513, 518, 619, 659, 702, 737
FaqI GGGAC 1 cut(s) 7
FatI CATG 1 cut(s) 511
FauI CCCGC 1 cut(s) 789
FblI GTMKAC 2 cut(s) 618, 635
Fnu4HI GCNGC 4 cut(s) 416, 476, 811, 889
FokI GGATG 3 cut(s) 16, 134, 173
FriOI GRGCYC 1 cut(s) 504
Fsp4HI GCNGC 4 cut(s) 416, 476, 811, 889
FspBI CTAG 1 cut(s) 546
GlaI GCGC 1 cut(s) 84
GluI GCNGC 4 cut(s) 416, 476, 811, 889
GsaI CCCAGC 1 cut(s) 246
GsuI CTGGAG 1 cut(s) 660
HaeII RGCGCY 1 cut(s) 86
HaeIII GGCC 1 cut(s) 106
HapII CCGG 3 cut(s) 11, 80, 662
HhaI GCGC 1 cut(s) 85
Hin1II CATG 1 cut(s) 515
Hin6I GCGC 1 cut(s) 83
HinP1I GCGC 1 cut(s) 83
HinfI GANTC 6 cut(s) 61, 74, 309, 339, 485, 623
HpaII CCGG 3 cut(s) 11, 80, 662
HphI GGTGA 7 cut(s) 25, 40, 101, 166, 371, 603, 677
Hpy166II GTNNAC 2 cut(s) 619, 636
Hpy188I TCNGA 9 cut(s) 58, 66, 121, 131, 268, 314, 484, 648, 718
Hpy188III TCNNGA 3 cut(s) 172, 726, 845
Hpy8I GTNNAC 2 cut(s) 619, 636
Hpy99I CGWCG 2 cut(s) 121, 830
HpyAV CCTTC 2 cut(s) 208, 826
HpyCH4III ACNGT 1 cut(s) 318
HpyCH4V TGCA 1 cut(s) 524
HpyF10VI GCNNNNNNNGC 7 cut(s) 112, 248, 407, 421, 472, 508, 888
HpyF3I CTNAG 6 cut(s) 425, 444, 503, 630, 768, 779
Hsp92II CATG 1 cut(s) 515
HspAI GCGC 1 cut(s) 83
KspI CCGCGG 1 cut(s) 39
Kzo9I GATC 3 cut(s) 40, 126, 648
LmnI GCTCC 5 cut(s) 90, 248, 499, 565, 585
Lsp1109I GCAGC 4 cut(s) 402, 487, 822, 900
LweI GCATC 1 cut(s) 272
MabI ACCWGGT 2 cut(s) 50, 271
MaeI CTAG 1 cut(s) 546
MaeIII GTNAC 2 cut(s) 154, 373
MalI GATC 3 cut(s) 42, 128, 650
MboI GATC 3 cut(s) 40, 126, 648
MboII GAAGA 6 cut(s) 84, 377, 481, 703, 706, 718
MfeI CAATTG 1 cut(s) 396
MflI RGATCY 1 cut(s) 40
MhlI GDGCHC 2 cut(s) 8, 504
MluCI AATT 3 cut(s) 396, 537, 710
MlyI GAGTC 4 cut(s) 55, 68, 494, 632
MmeI TCCRAC 2 cut(s) 99, 337
MseI TTAA 2 cut(s) 179, 904
MslI CAYNNNNRTG 1 cut(s) 11
MspA1I CMGCKG 1 cut(s) 38
MspI CCGG 3 cut(s) 11, 80, 662
MspR9I CCNGG 5 cut(s) 52, 80, 273, 663, 876
MunI CAATTG 1 cut(s) 396
Mva1269I GAATGC 1 cut(s) 588
MvaI CCWGG 3 cut(s) 52, 273, 876
MvnI CGCG 1 cut(s) 38
MwoI GCNNNNNNNGC 7 cut(s) 112, 248, 407, 421, 472, 508, 888
NciI CCSGG 2 cut(s) 80, 663
NdeII GATC 3 cut(s) 40, 126, 648
NlaIII CATG 1 cut(s) 515
NlaIV GGNNCC 2 cut(s) 433, 672
NmeAIII GCCGAG 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 154
OliI CACNNNNGTG 1 cut(s) 11
PaeR7I CTCGAG 1 cut(s) 843
PctI GAATGC 1 cut(s) 588
PfeI GAWTC 2 cut(s) 309, 339
Pfl23II CGTACG 1 cut(s) 862
PkrI GCNGC 4 cut(s) 417, 477, 812, 890
PleI GAGTC 4 cut(s) 55, 68, 493, 631
PpsI GAGTC 4 cut(s) 55, 68, 493, 631
PpuMI RGGWCCY 1 cut(s) 670
Psp124BI GAGCTC 1 cut(s) 504
Psp5II RGGWCCY 1 cut(s) 670
Psp6I CCWGG 3 cut(s) 50, 271, 874
PspFI CCCAGC 1 cut(s) 242
PspGI CCWGG 3 cut(s) 50, 271, 874
PspLI CGTACG 1 cut(s) 862
PspN4I GGNNCC 2 cut(s) 433, 672
PspPI GGNCC 2 cut(s) 54, 670
PspPPI RGGWCCY 1 cut(s) 670
PstNI CAGNNNCTG 1 cut(s) 272
PsuI RGATCY 1 cut(s) 40
RsaI GTAC 3 cut(s) 206, 320, 864
RsaNI GTAC 3 cut(s) 205, 319, 863
RseI CAYNNNNRTG 1 cut(s) 11
SacI GAGCTC 1 cut(s) 504
SacII CCGCGG 1 cut(s) 39
SaqAI TTAA 2 cut(s) 179, 904
SatI GCNGC 4 cut(s) 416, 476, 811, 889
Sau3AI GATC 3 cut(s) 40, 126, 648
Sau96I GGNCC 2 cut(s) 54, 670
SchI GAGTC 4 cut(s) 55, 68, 494, 632
ScrFI CCNGG 5 cut(s) 52, 80, 273, 663, 876
SduI GDGCHC 2 cut(s) 8, 504
SexAI ACCWGGT 2 cut(s) 50, 271
SfaNI GCATC 1 cut(s) 272
Sfr274I CTCGAG 1 cut(s) 843
Sfr303I CCGCGG 1 cut(s) 39
SgrBI CCGCGG 1 cut(s) 39
SinI GGWCC 2 cut(s) 54, 670
SlaI CTCGAG 1 cut(s) 843
SmiMI CAYNNNNRTG 1 cut(s) 11
SmlI CTYRAG 1 cut(s) 843
SmoI CTYRAG 1 cut(s) 843
Sse9I AATT 3 cut(s) 396, 537, 710
SsiI CCGC 5 cut(s) 36, 38, 96, 329, 796
SspI AATATT 1 cut(s) 851
SspMI CTAG 1 cut(s) 546
SstI GAGCTC 1 cut(s) 504
StyD4I CCNGG 5 cut(s) 50, 78, 271, 661, 874
StyI CCWWGG 3 cut(s) 435, 545, 897
TaaI ACNGT 1 cut(s) 318
TaqI TCGA 2 cut(s) 171, 844
TasI AATT 3 cut(s) 396, 537, 710
TfiI GAWTC 2 cut(s) 309, 339
Tru1I TTAA 2 cut(s) 179, 904
Tru9I TTAA 2 cut(s) 179, 904
TscAI CASTG 2 cut(s) 511, 783
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 4 cut(s) 415, 475, 810, 888
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 2 cut(s) 227, 273
TspGWI ACGGA 2 cut(s) 173, 747
TspRI CASTG 2 cut(s) 511, 783
VpaK11BI GGWCC 2 cut(s) 54, 670
XagI CCTNNNNNAGG 1 cut(s) 198
XapI RAATTY 2 cut(s) 537, 710
XcmI CCANNNNNNNNNTGG 1 cut(s) 119
XhoI CTCGAG 1 cut(s) 843
XmaJI CCTAGG 1 cut(s) 545
XmiI GTMKAC 2 cut(s) 618, 635
XspI CTAG 1 cut(s) 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.