Rh7BG453300

Protein of unknown function (DUF4057)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7B
OG0011778
Physical Location & Seq
Reverse (-)
53369351 .. 53371401
2051 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7BG453300.1

Sequence Viewer

Length: 915 bp
ATGAGCACTCCGGTGAGGAAGCCCCACACATCCACCGCGGATCTGCTCACCTGGTCCGAAACTCCGATTGCCGACTCTCCGGCGCTCTCCTCCTCCGCTTCTCGGCCTCACCAGCCGTCGGATGGGATCAAAAAAGTGGTGTTTGGAGGTCAGGTGACGGATGAGGAGGTCGAGAGCTTAAACAAACGAAAACCTTGTTCAGGGTACAAGATGAAGGAGATGACTGGGAGTGGCATTTTTACCGGGGGAGCAGACGATGAAACATTAGAACCTGGTAGTGCTAATCCTACCCCAAATAGCAAAAGCGGAATCCGACTGTACCAGCAAGCGGTTGTTGGAATCAGTCATATCTCATTTGGTGAGGAAGAGGGCGTTGCTCCCAAAAAGCCTACTACAATTGCTGAAGTTGCAAAGCTGCGCGAGCTGAGTGGAACCTTGGAAACTGAGGCAGAGGCAGAGGCAAGGCTGAAGAAGCAGCTTTCAGACTCTAAATTTAAGGAGCTCAGTGGGCATGACATATTTGCACCCCCTCCTGAAATTTTACCTAGGGAAACTACTGCTCCACGAGCGCTGGCTTTGAAAGGAAGCATTCAAATAGGGGAACCTACTTCACCAGTACATGAACCTGTTAAGGTGTCTAAGGCTGCTGGAGGTCAGAACAATGTTATACCAGGTGAGGACCCTATGTCCAAGACAGCGAAGAAGATTTATGACAAGAAATTTTCCGAGCTGTCAGGAAATGACATATTCAAGGGCGATGTTCCTCCGTCCTCTGCTGAGAAACCACTGAGTGTGGCAAAATTGCGGGAGATGAGTGGCAGCAACATCTTTGCCGACGGGAAGGCAGAGGCTCGAGAATATTTGGGTGGCGTACGCAAACCCCCTGGCGGCGAGAGCAGCATTGCTTTGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4057

Protein Analysis

304

Amino Acids

32.2

Weight (kDa)

6.28

Isoelectric Point (pI)

41.06

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4057 PF13266 2 - 302 1.8e-145 Protein of unknown function (DUF4057)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011778)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78150 AT1G78150 AT1G78150
fragaria_vesca FvH4_5g37630
malus_domestica MD08G1181800.v1.1 MD15G1367100.v1.1
prunus_persica Prupe.1G515000_v2.0.a1
pyrus_communis pycom08g15500 pycom15g32910
rosa_chinensis RchiOBHm_Chr7g0239311
rosa_laevigata RLG00000000764
rosa_multiflora Rmu_sc0007840.1_g000003
rosa_roxburghii Rroxscaffold_3G00221030
rosa_rugosa Rorug07G0327200
rosa_samantha Rh7AG480600 Rh7BG453300 Rh7CG498500 Rh7DG466600
rosa_wichuraiana Rw7G040260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 38, 420
AciI CCGC 7 cut(s) 36, 38, 96, 306, 329, 805, 888
AclWI GGATC 2 cut(s) 48, 134
AcsI RAATTY 3 cut(s) 491, 537, 719
AcuI CTGAAG 2 cut(s) 423, 488
AdeI CACNNNGTG 1 cut(s) 791
AfaI GTAC 4 cut(s) 206, 320, 618, 873
AfeI AGCGCT 1 cut(s) 570
AfiI CCNNNNNNNGG 6 cut(s) 102, 118, 122, 200, 328, 887
AgsI TTSAA 3 cut(s) 580, 593, 751
AhdI GACNNNNNGTC 1 cut(s) 685
AjnI CCWGG 4 cut(s) 50, 271, 670, 883
AleI CACNNNNGTG 1 cut(s) 11
AluBI AGCT 6 cut(s) 177, 415, 424, 478, 502, 730
AluI AGCT 6 cut(s) 177, 415, 424, 478, 502, 730
Alw21I GWGCWC 2 cut(s) 8, 504
AlwI GGATC 2 cut(s) 48, 134
Ama87I CYCGRG 1 cut(s) 852
Aor51HI AGCGCT 1 cut(s) 570
AoxI GGCC 1 cut(s) 104
ApeKI GCWGC 5 cut(s) 415, 475, 644, 819, 897
ApoI RAATTY 3 cut(s) 491, 537, 719
AspA2I CCTAGG 1 cut(s) 545
AspLEI GCGC 3 cut(s) 85, 420, 571
AspS9I GGNCC 2 cut(s) 54, 679
AsuC2I CCSGG 1 cut(s) 244
AsuHPI GGTGA 7 cut(s) 25, 40, 101, 166, 371, 603, 686
AvaI CYCGRG 1 cut(s) 852
AvaII GGWCC 2 cut(s) 54, 679
AvrII CCTAGG 1 cut(s) 545
BanII GRGCYC 1 cut(s) 504
BauI CACGAG 1 cut(s) 564
Bbv12I GWGCWC 2 cut(s) 8, 504
BbvI GCAGC 5 cut(s) 402, 487, 631, 831, 909
BccI CCATC 1 cut(s) 116
BceAI ACGGC 1 cut(s) 100
BciT130I CCWGG 4 cut(s) 52, 273, 672, 885
BcnI CCSGG 1 cut(s) 244
BfaI CTAG 1 cut(s) 546
BfoI RGCGCY 2 cut(s) 86, 572
BisI GCNGC 6 cut(s) 416, 476, 645, 820, 889, 898
BlnI CCTAGG 1 cut(s) 545
BlsI GCNGC 6 cut(s) 417, 477, 646, 821, 890, 899
Bme1390I CCNGG 5 cut(s) 52, 244, 273, 672, 885
Bme18I GGWCC 2 cut(s) 54, 679
BmeRI GACNNNNNGTC 1 cut(s) 685
BmeT110I CYCGRG 1 cut(s) 852
BmgT120I GGNCC 2 cut(s) 54, 679
BmiI GGNNCC 3 cut(s) 433, 603, 681
BmrFI CCNGG 5 cut(s) 52, 244, 273, 672, 885
BmrI ACTGGG 1 cut(s) 234
BmuI ACTGGG 1 cut(s) 234
BpmI CTGGAG 1 cut(s) 669
BpuMI CCSGG 1 cut(s) 244
BsaJI CCNNGG 5 cut(s) 36, 243, 435, 545, 883
BsaWI WCCGGW 1 cut(s) 10
BsaXI ACNNNNNCTCC 4 cut(s) 138, 168, 544, 574
Bsc4I CCNNNNNNNGG 6 cut(s) 102, 118, 122, 200, 328, 887
Bse1I ACTGG 2 cut(s) 229, 614
Bse3DI GCAATG 1 cut(s) 900
BseBI CCWGG 4 cut(s) 52, 273, 672, 885
BseDI CCNNGG 5 cut(s) 36, 243, 435, 545, 883
BseGI GGATG 3 cut(s) 29, 127, 166
BseLI CCNNNNNNNGG 6 cut(s) 102, 118, 122, 200, 328, 887
BseMI GCAATG 1 cut(s) 900
BseMII CTCAG 5 cut(s) 416, 435, 517, 768, 779
BseNI ACTGG 2 cut(s) 229, 614
BseRI GAGGAG 3 cut(s) 79, 82, 179
BseXI GCAGC 5 cut(s) 402, 487, 631, 831, 909
Bsh1236I CGCG 2 cut(s) 38, 420
BshFI GGCC 1 cut(s) 106
BsiHKAI GWGCWC 2 cut(s) 8, 504
BsiHKCI CYCGRG 1 cut(s) 852
BsiSI CCGG 3 cut(s) 11, 80, 243
BsiWI CGTACG 1 cut(s) 871
BslI CCNNNNNNNGG 6 cut(s) 102, 118, 122, 200, 328, 887
BsmI GAATGC 1 cut(s) 588
BsnI GGCC 1 cut(s) 106
BsoBI CYCGRG 1 cut(s) 852
Bsp1286I GDGCHC 2 cut(s) 8, 504
Bsp143I GATC 2 cut(s) 40, 126
BspACI CCGC 7 cut(s) 36, 38, 96, 306, 329, 805, 888
BspANI GGCC 1 cut(s) 106
BspCNI CTCAG 5 cut(s) 417, 436, 516, 769, 780
BspFNI CGCG 2 cut(s) 38, 420
BspLI GGNNCC 3 cut(s) 433, 603, 681
BspPI GGATC 2 cut(s) 48, 134
BsrDI GCAATG 1 cut(s) 900
BsrI ACTGG 2 cut(s) 229, 614
BssECI CCNNGG 5 cut(s) 36, 243, 435, 545, 883
BssMI GATC 2 cut(s) 40, 126
BssSI CACGAG 1 cut(s) 564
BssT1I CCWWGG 2 cut(s) 435, 545
Bst2BI CACGAG 1 cut(s) 564
Bst2UI CCWGG 4 cut(s) 52, 273, 672, 885
Bst4CI ACNGT 1 cut(s) 318
Bst6I CTCTTC 1 cut(s) 360
BstC8I GCNNGC 3 cut(s) 327, 422, 573
BstDEI CTNAG 6 cut(s) 425, 444, 503, 639, 777, 788
BstDSI CCRYGG 1 cut(s) 36
BstENI CCTNNNNNAGG 1 cut(s) 198
BstF5I GGATG 3 cut(s) 29, 127, 166
BstFNI CGCG 2 cut(s) 38, 420
BstH2I RGCGCY 2 cut(s) 86, 572
BstHHI GCGC 3 cut(s) 85, 420, 571
BstKTI GATC 2 cut(s) 43, 129
BstMBI GATC 2 cut(s) 40, 126
BstMWI GCNNNNNNNGC 8 cut(s) 112, 407, 421, 472, 508, 566, 894, 897
BstNI CCWGG 4 cut(s) 52, 273, 672, 885
BstSCI CCNGG 5 cut(s) 50, 242, 271, 670, 883
BstUI CGCG 2 cut(s) 38, 420
BstV1I GCAGC 5 cut(s) 402, 487, 631, 831, 909
BstX2I RGATCY 1 cut(s) 40
BstYI RGATCY 1 cut(s) 40
BsuRI GGCC 1 cut(s) 106
BtgI CCRYGG 1 cut(s) 36
BtgZI GCGATG 1 cut(s) 771
BtsCI GGATG 3 cut(s) 29, 127, 166
BtsIMutI CAGTG 2 cut(s) 511, 785
Cac8I GCNNGC 3 cut(s) 327, 422, 573
CfoI GCGC 3 cut(s) 85, 420, 571
Cfr13I GGNCC 2 cut(s) 54, 679
Cfr42I CCGCGG 1 cut(s) 39
CsiI ACCWGGT 3 cut(s) 50, 271, 670
Csp6I GTAC 4 cut(s) 205, 319, 617, 872
CviAII CATG 2 cut(s) 512, 620
CviQI GTAC 4 cut(s) 205, 319, 617, 872
DdeI CTNAG 6 cut(s) 425, 444, 503, 639, 777, 788
DpnI GATC 2 cut(s) 42, 128
DpnII GATC 2 cut(s) 40, 126
DraIII CACNNNGTG 1 cut(s) 791
DriI GACNNNNNGTC 1 cut(s) 685
Eam1104I CTCTTC 1 cut(s) 360
Eam1105I GACNNNNNGTC 1 cut(s) 685
EarI CTCTTC 1 cut(s) 360
Ecl136II GAGCTC 1 cut(s) 502
Eco130I CCWWGG 2 cut(s) 435, 545
Eco24I GRGCYC 1 cut(s) 504
Eco47I GGWCC 2 cut(s) 54, 679
Eco47III AGCGCT 1 cut(s) 570
Eco53kI GAGCTC 1 cut(s) 502
Eco57I CTGAAG 2 cut(s) 423, 488
Eco88I CYCGRG 1 cut(s) 852
EcoICRI GAGCTC 1 cut(s) 502
EcoNI CCTNNNNNAGG 1 cut(s) 198
EcoO109I RGGNCCY 1 cut(s) 679
EcoRII CCWGG 4 cut(s) 50, 271, 670, 883
EcoT14I CCWWGG 2 cut(s) 435, 545
EcoT38I GRGCYC 1 cut(s) 504
ErhI CCWWGG 2 cut(s) 435, 545
FaeI CATG 2 cut(s) 515, 623
FaiI YATR 9 cut(s) 348, 513, 518, 621, 668, 686, 711, 746, 913
FatI CATG 2 cut(s) 511, 619
FauI CCCGC 1 cut(s) 798
Fnu4HI GCNGC 6 cut(s) 416, 476, 645, 820, 889, 898
FokI GGATG 3 cut(s) 16, 134, 173
FriOI GRGCYC 1 cut(s) 504
Fsp4HI GCNGC 6 cut(s) 416, 476, 645, 820, 889, 898
FspBI CTAG 1 cut(s) 546
GlaI GCGC 3 cut(s) 84, 419, 570
GluI GCNGC 6 cut(s) 416, 476, 645, 820, 889, 898
GsuI CTGGAG 1 cut(s) 669
HaeII RGCGCY 2 cut(s) 86, 572
HaeIII GGCC 1 cut(s) 106
HapII CCGG 3 cut(s) 11, 80, 243
HhaI GCGC 3 cut(s) 85, 420, 571
Hin1II CATG 2 cut(s) 515, 623
Hin6I GCGC 3 cut(s) 83, 418, 569
HinP1I GCGC 3 cut(s) 83, 418, 569
HinfI GANTC 4 cut(s) 74, 309, 339, 485
HpaII CCGG 3 cut(s) 11, 80, 243
HphI GGTGA 7 cut(s) 25, 40, 101, 166, 371, 603, 686
Hpy188I TCNGA 7 cut(s) 58, 66, 121, 314, 484, 657, 727
Hpy188III TCNNGA 4 cut(s) 172, 533, 735, 854
Hpy99I CGWCG 2 cut(s) 121, 839
HpyAV CCTTC 2 cut(s) 208, 835
HpyCH4III ACNGT 1 cut(s) 318
HpyCH4V TGCA 2 cut(s) 410, 524
HpyF10VI GCNNNNNNNGC 8 cut(s) 112, 407, 421, 472, 508, 566, 894, 897
HpyF3I CTNAG 6 cut(s) 425, 444, 503, 639, 777, 788
Hsp92II CATG 2 cut(s) 515, 623
HspAI GCGC 3 cut(s) 83, 418, 569
KspI CCGCGG 1 cut(s) 39
Kzo9I GATC 2 cut(s) 40, 126
LmnI GCTCC 4 cut(s) 248, 382, 499, 565
Lsp1109I GCAGC 5 cut(s) 402, 487, 631, 831, 909
MabI ACCWGGT 3 cut(s) 50, 271, 670
MaeI CTAG 1 cut(s) 546
MaeIII GTNAC 1 cut(s) 154
MalI GATC 2 cut(s) 42, 128
MboI GATC 2 cut(s) 40, 126
MboII GAAGA 4 cut(s) 377, 481, 712, 715
MfeI CAATTG 1 cut(s) 396
MflI RGATCY 1 cut(s) 40
MhlI GDGCHC 2 cut(s) 8, 504
MluCI AATT 5 cut(s) 396, 491, 537, 719, 800
MlyI GAGTC 2 cut(s) 68, 479
MmeI TCCRAC 3 cut(s) 99, 316, 337
MseI TTAA 3 cut(s) 179, 495, 630
MslI CAYNNNNRTG 1 cut(s) 11
MspA1I CMGCKG 1 cut(s) 38
MspI CCGG 3 cut(s) 11, 80, 243
MspR9I CCNGG 5 cut(s) 52, 244, 273, 672, 885
MunI CAATTG 1 cut(s) 396
Mva1269I GAATGC 1 cut(s) 588
MvaI CCWGG 4 cut(s) 52, 273, 672, 885
MvnI CGCG 2 cut(s) 38, 420
MwoI GCNNNNNNNGC 8 cut(s) 112, 407, 421, 472, 508, 566, 894, 897
NciI CCSGG 1 cut(s) 244
NdeII GATC 2 cut(s) 40, 126
NlaIII CATG 2 cut(s) 515, 623
NlaIV GGNNCC 3 cut(s) 433, 603, 681
NmeAIII GCCGAG 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 154
OliI CACNNNNGTG 1 cut(s) 11
PaeR7I CTCGAG 1 cut(s) 852
PctI GAATGC 1 cut(s) 588
PfeI GAWTC 2 cut(s) 309, 339
Pfl23II CGTACG 1 cut(s) 871
PkrI GCNGC 6 cut(s) 417, 477, 646, 821, 890, 899
PleI GAGTC 2 cut(s) 68, 479
PpsI GAGTC 2 cut(s) 68, 479
PpuMI RGGWCCY 1 cut(s) 679
Psp124BI GAGCTC 1 cut(s) 504
Psp5II RGGWCCY 1 cut(s) 679
Psp6I CCWGG 4 cut(s) 50, 271, 670, 883
PspGI CCWGG 4 cut(s) 50, 271, 670, 883
PspLI CGTACG 1 cut(s) 871
PspN4I GGNNCC 3 cut(s) 433, 603, 681
PspPI GGNCC 2 cut(s) 54, 679
PspPPI RGGWCCY 1 cut(s) 679
PsuI RGATCY 1 cut(s) 40
RsaI GTAC 4 cut(s) 206, 320, 618, 873
RsaNI GTAC 4 cut(s) 205, 319, 617, 872
RseI CAYNNNNRTG 1 cut(s) 11
SacI GAGCTC 1 cut(s) 504
SacII CCGCGG 1 cut(s) 39
SaqAI TTAA 3 cut(s) 179, 495, 630
SatI GCNGC 6 cut(s) 416, 476, 645, 820, 889, 898
Sau3AI GATC 2 cut(s) 40, 126
Sau96I GGNCC 2 cut(s) 54, 679
SchI GAGTC 2 cut(s) 68, 479
ScrFI CCNGG 5 cut(s) 52, 244, 273, 672, 885
SduI GDGCHC 2 cut(s) 8, 504
SexAI ACCWGGT 3 cut(s) 50, 271, 670
Sfr274I CTCGAG 1 cut(s) 852
Sfr303I CCGCGG 1 cut(s) 39
SgrBI CCGCGG 1 cut(s) 39
SinI GGWCC 2 cut(s) 54, 679
SlaI CTCGAG 1 cut(s) 852
SmiMI CAYNNNNRTG 1 cut(s) 11
SmlI CTYRAG 1 cut(s) 852
SmoI CTYRAG 1 cut(s) 852
Sse9I AATT 5 cut(s) 396, 491, 537, 719, 800
SsiI CCGC 7 cut(s) 36, 38, 96, 306, 329, 805, 888
SspI AATATT 1 cut(s) 860
SspMI CTAG 1 cut(s) 546
SstI GAGCTC 1 cut(s) 504
StyD4I CCNGG 5 cut(s) 50, 242, 271, 670, 883
StyI CCWWGG 2 cut(s) 435, 545
TaaI ACNGT 1 cut(s) 318
TaqI TCGA 2 cut(s) 171, 853
TasI AATT 5 cut(s) 396, 491, 537, 719, 800
TatI WGTACW 1 cut(s) 616
TauI GCSGC 1 cut(s) 891
TfiI GAWTC 2 cut(s) 309, 339
Tru1I TTAA 3 cut(s) 179, 495, 630
Tru9I TTAA 3 cut(s) 179, 495, 630
TscAI CASTG 2 cut(s) 511, 792
TseFI GTSAC 1 cut(s) 154
TseI GCWGC 5 cut(s) 415, 475, 644, 819, 897
Tsp45I GTSAC 1 cut(s) 154
TspDTI ATGAA 3 cut(s) 227, 273, 636
TspGWI ACGGA 2 cut(s) 173, 756
TspRI CASTG 2 cut(s) 511, 792
VpaK11BI GGWCC 2 cut(s) 54, 679
XagI CCTNNNNNAGG 1 cut(s) 198
XapI RAATTY 3 cut(s) 491, 537, 719
XcmI CCANNNNNNNNNTGG 1 cut(s) 119
XhoI CTCGAG 1 cut(s) 852
XmaJI CCTAGG 1 cut(s) 545
XspI CTAG 1 cut(s) 546
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.