Rmu_sc0007840.1_g000003

Protein of unknown function (DUF4057)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0007840.1
OG0011778
Physical Location & Seq
Forward (+)
19984 .. 21989
2006 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0007840.1_g000003.1.cds

Sequence Viewer

Length: 927 bp
atgagcactccggtgaggaagccccacacatccaccgcggatctgctcacctggtccgagactccgattgccgactctccggcgctctcctcctccgccgcccgctccggttctcggcctcaccagccgtcggatgggatcaaaaaagtggtgtttggaggtcaggtcacggatgaggaggtcgagagcttaaacaaacgaaaaccttgctcggggtacaagatgaaggagatgactgggagtggcatttttactgggggagcggatgatgaagcatcagaacctggtagtgctaatcctaccccaaatagcaaaagcggaatccgactgtaccagcaagcggttgctggaatcagtcatatctcatttggtgaggaagagggtgttgctcccaaaaagcctactacaattgctgaagttgcaaagctgcgcgagctgagtggaaccttggaaactgaggcagaggcagaggcaaggttgaagaagcagctttcagactctaaatttaaggagctcagtgggcatgacatatttgcaccccctcctgaaattttacctagggaaactactgctccacgagcgctggctttgaaaggaagcattcaaataggggaacctacttcaccagtacatgaacctgttaaggtgtctaaagctgctggaggtcagaacaatgttataccaggtgaggaccctgtgtccaagacggcgaagaagatttatgacaagaaattttccgagctgtcaggaaatgacatattcaagggcgatgttcctccgtcctctgctgagaaaccactgagtgtggcaaaattgcgggagatgagtggcagcaacatctttgctgacgggaaggcagaggctcgagaatatttgggtggtgtacgcaaaccccctggtggcgagagcagcattgctttggtataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4057

Protein Analysis

308

Amino Acids

32.46

Weight (kDa)

6.57

Isoelectric Point (pI)

42.42

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011778)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78150 AT1G78150 AT1G78150
fragaria_vesca FvH4_5g37630
malus_domestica MD08G1181800.v1.1 MD15G1367100.v1.1
prunus_persica Prupe.1G515000_v2.0.a1
pyrus_communis pycom08g15500 pycom15g32910
rosa_chinensis RchiOBHm_Chr7g0239311
rosa_laevigata RLG00000000764
rosa_multiflora Rmu_sc0007840.1_g000003
rosa_roxburghii Rroxscaffold_3G00221030
rosa_rugosa Rorug07G0327200
rosa_samantha Rh7AG480600 Rh7BG453300 Rh7CG498500 Rh7DG466600
rosa_wichuraiana Rw7G040260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 105, 263
AccII CGCG 2 cut(s) 38, 432
AciI CCGC 9 cut(s) 36, 38, 96, 99, 103, 263, 318, 341, 817
AclWI GGATC 2 cut(s) 48, 146
AcsI RAATTY 3 cut(s) 503, 549, 731
AcuI CTGAAG 1 cut(s) 435
AdeI CACNNNGTG 1 cut(s) 803
AfaI GTAC 4 cut(s) 218, 332, 630, 885
AfeI AGCGCT 1 cut(s) 582
AfiI CCNNNNNNNGG 6 cut(s) 114, 130, 134, 212, 340, 899
AgsI TTSAA 4 cut(s) 481, 592, 605, 763
AhdI GACNNNNNGTC 1 cut(s) 697
AjnI CCWGG 4 cut(s) 50, 283, 682, 895
AleI CACNNNNGTG 1 cut(s) 11
AluBI AGCT 7 cut(s) 189, 427, 436, 490, 514, 656, 742
AluI AGCT 7 cut(s) 189, 427, 436, 490, 514, 656, 742
Alw21I GWGCWC 2 cut(s) 8, 516
Alw26I GTCTC 1 cut(s) 53
AlwI GGATC 2 cut(s) 48, 146
AlwNI CAGNNNCTG 1 cut(s) 284
Ama87I CYCGRG 2 cut(s) 211, 864
Aor51HI AGCGCT 1 cut(s) 582
AoxI GGCC 1 cut(s) 116
ApeKI GCWGC 5 cut(s) 427, 487, 656, 831, 909
ApoI RAATTY 3 cut(s) 503, 549, 731
AspA2I CCTAGG 1 cut(s) 557
AspLEI GCGC 3 cut(s) 85, 432, 583
AspS9I GGNCC 2 cut(s) 54, 691
AsuHPI GGTGA 6 cut(s) 25, 40, 113, 383, 615, 698
AvaI CYCGRG 2 cut(s) 211, 864
AvaII GGWCC 2 cut(s) 54, 691
AvrII CCTAGG 1 cut(s) 557
BanII GRGCYC 1 cut(s) 516
BauI CACGAG 1 cut(s) 576
Bbv12I GWGCWC 2 cut(s) 8, 516
BbvI GCAGC 5 cut(s) 414, 499, 643, 843, 921
BccI CCATC 1 cut(s) 128
BceAI ACGGC 2 cut(s) 112, 723
BcgI CGANNNNNNTGC 2 cut(s) 189, 223
BciT130I CCWGG 4 cut(s) 52, 285, 684, 897
BcoDI GTCTC 1 cut(s) 53
BfaI CTAG 1 cut(s) 558
BfoI RGCGCY 2 cut(s) 86, 584
BisI GCNGC 6 cut(s) 99, 428, 488, 657, 832, 910
BlnI CCTAGG 1 cut(s) 557
BlsI GCNGC 6 cut(s) 100, 429, 489, 658, 833, 911
Bme1390I CCNGG 4 cut(s) 52, 285, 684, 897
Bme18I GGWCC 2 cut(s) 54, 691
BmeRI GACNNNNNGTC 1 cut(s) 697
BmeT110I CYCGRG 2 cut(s) 211, 864
BmgT120I GGNCC 2 cut(s) 54, 691
BmiI GGNNCC 3 cut(s) 445, 615, 693
BmrFI CCNGG 4 cut(s) 52, 285, 684, 897
BmrI ACTGGG 2 cut(s) 246, 264
BmsI GCATC 1 cut(s) 284
BmuI ACTGGG 2 cut(s) 246, 264
BpmI CTGGAG 1 cut(s) 681
BsaJI CCNNGG 4 cut(s) 36, 447, 557, 895
BsaWI WCCGGW 2 cut(s) 10, 107
BsaXI ACNNNNNCTCC 4 cut(s) 150, 180, 556, 586
Bsc4I CCNNNNNNNGG 6 cut(s) 114, 130, 134, 212, 340, 899
Bse1I ACTGG 3 cut(s) 241, 259, 626
Bse3DI GCAATG 1 cut(s) 912
BseBI CCWGG 4 cut(s) 52, 285, 684, 897
BseDI CCNNGG 4 cut(s) 36, 447, 557, 895
BseGI GGATG 4 cut(s) 29, 139, 178, 271
BseLI CCNNNNNNNGG 6 cut(s) 114, 130, 134, 212, 340, 899
BseMI GCAATG 1 cut(s) 912
BseMII CTCAG 5 cut(s) 428, 447, 529, 780, 791
BseNI ACTGG 3 cut(s) 241, 259, 626
BseRI GAGGAG 3 cut(s) 79, 82, 191
BseXI GCAGC 5 cut(s) 414, 499, 643, 843, 921
Bsh1236I CGCG 2 cut(s) 38, 432
BshFI GGCC 1 cut(s) 118
BsiHKAI GWGCWC 2 cut(s) 8, 516
BsiHKCI CYCGRG 2 cut(s) 211, 864
BsiSI CCGG 3 cut(s) 11, 80, 108
BslI CCNNNNNNNGG 6 cut(s) 114, 130, 134, 212, 340, 899
BsmAI GTCTC 1 cut(s) 53
BsmI GAATGC 1 cut(s) 600
BsnI GGCC 1 cut(s) 118
BsoBI CYCGRG 2 cut(s) 211, 864
Bsp1286I GDGCHC 2 cut(s) 8, 516
Bsp143I GATC 2 cut(s) 40, 138
BspACI CCGC 9 cut(s) 36, 38, 96, 99, 103, 263, 318, 341, 817
BspANI GGCC 1 cut(s) 118
BspCNI CTCAG 5 cut(s) 429, 448, 528, 781, 792
BspFNI CGCG 2 cut(s) 38, 432
BspLI GGNNCC 3 cut(s) 445, 615, 693
BspPI GGATC 2 cut(s) 48, 146
BsrBI CCGCTC 2 cut(s) 105, 263
BsrDI GCAATG 1 cut(s) 912
BsrI ACTGG 3 cut(s) 241, 259, 626
BssECI CCNNGG 4 cut(s) 36, 447, 557, 895
BssMI GATC 2 cut(s) 40, 138
BssSI CACGAG 1 cut(s) 576
BssT1I CCWWGG 2 cut(s) 447, 557
Bst2BI CACGAG 1 cut(s) 576
Bst2UI CCWGG 4 cut(s) 52, 285, 684, 897
Bst4CI ACNGT 1 cut(s) 330
Bst6I CTCTTC 1 cut(s) 372
BstC8I GCNNGC 4 cut(s) 103, 339, 434, 585
BstDEI CTNAG 5 cut(s) 437, 456, 515, 789, 800
BstDSI CCRYGG 1 cut(s) 36
BstF5I GGATG 4 cut(s) 29, 139, 178, 271
BstFNI CGCG 2 cut(s) 38, 432
BstH2I RGCGCY 2 cut(s) 86, 584
BstHHI GCGC 3 cut(s) 85, 432, 583
BstKTI GATC 2 cut(s) 43, 141
BstMAI GTCTC 1 cut(s) 53
BstMBI GATC 2 cut(s) 40, 138
BstMWI GCNNNNNNNGC 6 cut(s) 124, 419, 433, 520, 578, 909
BstNI CCWGG 4 cut(s) 52, 285, 684, 897
BstSCI CCNGG 4 cut(s) 50, 283, 682, 895
BstUI CGCG 2 cut(s) 38, 432
BstV1I GCAGC 5 cut(s) 414, 499, 643, 843, 921
BstX2I RGATCY 1 cut(s) 40
BstYI RGATCY 1 cut(s) 40
BsuRI GGCC 1 cut(s) 118
BtgI CCRYGG 1 cut(s) 36
BtgZI GCGATG 1 cut(s) 783
BtsCI GGATG 4 cut(s) 29, 139, 178, 271
BtsIMutI CAGTG 2 cut(s) 523, 797
Cac8I GCNNGC 4 cut(s) 103, 339, 434, 585
CaiI CAGNNNCTG 1 cut(s) 284
CfoI GCGC 3 cut(s) 85, 432, 583
Cfr13I GGNCC 2 cut(s) 54, 691
Cfr42I CCGCGG 1 cut(s) 39
CsiI ACCWGGT 3 cut(s) 50, 283, 682
Csp6I GTAC 4 cut(s) 217, 331, 629, 884
CviAII CATG 2 cut(s) 524, 632
CviQI GTAC 4 cut(s) 217, 331, 629, 884
DdeI CTNAG 5 cut(s) 437, 456, 515, 789, 800
DpnI GATC 2 cut(s) 42, 140
DpnII GATC 2 cut(s) 40, 138
DraIII CACNNNGTG 1 cut(s) 803
DriI GACNNNNNGTC 1 cut(s) 697
Eam1104I CTCTTC 1 cut(s) 372
Eam1105I GACNNNNNGTC 1 cut(s) 697
EarI CTCTTC 1 cut(s) 372
EciI GGCGGA 1 cut(s) 85
Ecl136II GAGCTC 1 cut(s) 514
Eco130I CCWWGG 2 cut(s) 447, 557
Eco24I GRGCYC 1 cut(s) 516
Eco47I GGWCC 2 cut(s) 54, 691
Eco47III AGCGCT 1 cut(s) 582
Eco53kI GAGCTC 1 cut(s) 514
Eco57I CTGAAG 1 cut(s) 435
Eco88I CYCGRG 2 cut(s) 211, 864
EcoICRI GAGCTC 1 cut(s) 514
EcoO109I RGGNCCY 1 cut(s) 691
EcoRII CCWGG 4 cut(s) 50, 283, 682, 895
EcoT14I CCWWGG 2 cut(s) 447, 557
EcoT38I GRGCYC 1 cut(s) 516
ErhI CCWWGG 2 cut(s) 447, 557
FaeI CATG 2 cut(s) 527, 635
FaiI YATR 8 cut(s) 360, 525, 530, 633, 680, 723, 758, 925
FatI CATG 2 cut(s) 523, 631
FauI CCCGC 2 cut(s) 110, 810
Fnu4HI GCNGC 6 cut(s) 99, 428, 488, 657, 832, 910
FokI GGATG 4 cut(s) 16, 146, 185, 278
FriOI GRGCYC 1 cut(s) 516
Fsp4HI GCNGC 6 cut(s) 99, 428, 488, 657, 832, 910
FspBI CTAG 1 cut(s) 558
GlaI GCGC 3 cut(s) 84, 431, 582
GluI GCNGC 6 cut(s) 99, 428, 488, 657, 832, 910
GsuI CTGGAG 1 cut(s) 681
HaeII RGCGCY 2 cut(s) 86, 584
HaeIII GGCC 1 cut(s) 118
HapII CCGG 3 cut(s) 11, 80, 108
HhaI GCGC 3 cut(s) 85, 432, 583
Hin1II CATG 2 cut(s) 527, 635
Hin6I GCGC 3 cut(s) 83, 430, 581
HinP1I GCGC 3 cut(s) 83, 430, 581
HinfI GANTC 5 cut(s) 61, 74, 321, 351, 497
HpaII CCGG 3 cut(s) 11, 80, 108
HphI GGTGA 6 cut(s) 25, 40, 113, 383, 615, 698
Hpy166II GTNNAC 1 cut(s) 884
Hpy188I TCNGA 8 cut(s) 58, 66, 133, 280, 326, 496, 669, 739
Hpy188III TCNNGA 4 cut(s) 184, 545, 747, 866
Hpy8I GTNNAC 1 cut(s) 884
Hpy99I CGWCG 1 cut(s) 133
HpyAV CCTTC 2 cut(s) 220, 847
HpyCH4III ACNGT 1 cut(s) 330
HpyCH4V TGCA 2 cut(s) 422, 536
HpyF10VI GCNNNNNNNGC 6 cut(s) 124, 419, 433, 520, 578, 909
HpyF3I CTNAG 5 cut(s) 437, 456, 515, 789, 800
Hsp92II CATG 2 cut(s) 527, 635
HspAI GCGC 3 cut(s) 83, 430, 581
KspI CCGCGG 1 cut(s) 39
Kzo9I GATC 2 cut(s) 40, 138
LmnI GCTCC 5 cut(s) 110, 260, 394, 511, 577
Lsp1109I GCAGC 5 cut(s) 414, 499, 643, 843, 921
LweI GCATC 1 cut(s) 284
MabI ACCWGGT 3 cut(s) 50, 283, 682
MaeI CTAG 1 cut(s) 558
MaeIII GTNAC 1 cut(s) 166
MalI GATC 2 cut(s) 42, 140
MbiI CCGCTC 2 cut(s) 105, 263
MboI GATC 2 cut(s) 40, 138
MboII GAAGA 4 cut(s) 389, 493, 724, 727
MfeI CAATTG 1 cut(s) 408
MflI RGATCY 1 cut(s) 40
MhlI GDGCHC 2 cut(s) 8, 516
MluCI AATT 5 cut(s) 408, 503, 549, 731, 812
MlyI GAGTC 3 cut(s) 55, 68, 491
MmeI TCCRAC 2 cut(s) 111, 349
MseI TTAA 3 cut(s) 191, 507, 642
MslI CAYNNNNRTG 1 cut(s) 11
MspA1I CMGCKG 1 cut(s) 38
MspI CCGG 3 cut(s) 11, 80, 108
MspR9I CCNGG 4 cut(s) 52, 285, 684, 897
MunI CAATTG 1 cut(s) 408
Mva1269I GAATGC 1 cut(s) 600
MvaI CCWGG 4 cut(s) 52, 285, 684, 897
MvnI CGCG 2 cut(s) 38, 432
MwoI GCNNNNNNNGC 6 cut(s) 124, 419, 433, 520, 578, 909
NdeII GATC 2 cut(s) 40, 138
NlaIII CATG 2 cut(s) 527, 635
NlaIV GGNNCC 3 cut(s) 445, 615, 693
NmeAIII GCCGAG 1 cut(s) 94
NmuCI GTSAC 1 cut(s) 166
OliI CACNNNNGTG 1 cut(s) 11
PaeR7I CTCGAG 1 cut(s) 864
PctI GAATGC 1 cut(s) 600
PfeI GAWTC 2 cut(s) 321, 351
PkrI GCNGC 6 cut(s) 100, 429, 489, 658, 833, 911
PleI GAGTC 3 cut(s) 55, 68, 491
PpsI GAGTC 3 cut(s) 55, 68, 491
PpuMI RGGWCCY 1 cut(s) 691
Psp124BI GAGCTC 1 cut(s) 516
Psp5II RGGWCCY 1 cut(s) 691
Psp6I CCWGG 4 cut(s) 50, 283, 682, 895
PspGI CCWGG 4 cut(s) 50, 283, 682, 895
PspN4I GGNNCC 3 cut(s) 445, 615, 693
PspPI GGNCC 2 cut(s) 54, 691
PspPPI RGGWCCY 1 cut(s) 691
PstNI CAGNNNCTG 1 cut(s) 284
PsuI RGATCY 1 cut(s) 40
RsaI GTAC 4 cut(s) 218, 332, 630, 885
RsaNI GTAC 4 cut(s) 217, 331, 629, 884
RseI CAYNNNNRTG 1 cut(s) 11
SacI GAGCTC 1 cut(s) 516
SacII CCGCGG 1 cut(s) 39
SaqAI TTAA 3 cut(s) 191, 507, 642
SatI GCNGC 6 cut(s) 99, 428, 488, 657, 832, 910
Sau3AI GATC 2 cut(s) 40, 138
Sau96I GGNCC 2 cut(s) 54, 691
SchI GAGTC 3 cut(s) 55, 68, 491
ScrFI CCNGG 4 cut(s) 52, 285, 684, 897
SduI GDGCHC 2 cut(s) 8, 516
SexAI ACCWGGT 3 cut(s) 50, 283, 682
SfaNI GCATC 1 cut(s) 284
Sfr274I CTCGAG 1 cut(s) 864
Sfr303I CCGCGG 1 cut(s) 39
SgrBI CCGCGG 1 cut(s) 39
SinI GGWCC 2 cut(s) 54, 691
SlaI CTCGAG 1 cut(s) 864
SmiMI CAYNNNNRTG 1 cut(s) 11
SmlI CTYRAG 1 cut(s) 864
SmoI CTYRAG 1 cut(s) 864
Sse9I AATT 5 cut(s) 408, 503, 549, 731, 812
SsiI CCGC 9 cut(s) 36, 38, 96, 99, 103, 263, 318, 341, 817
SspI AATATT 1 cut(s) 872
SspMI CTAG 1 cut(s) 558
SstI GAGCTC 1 cut(s) 516
StyD4I CCNGG 4 cut(s) 50, 283, 682, 895
StyI CCWWGG 2 cut(s) 447, 557
TaaI ACNGT 1 cut(s) 330
TaqI TCGA 2 cut(s) 183, 865
TasI AATT 5 cut(s) 408, 503, 549, 731, 812
TatI WGTACW 1 cut(s) 628
TauI GCSGC 1 cut(s) 101
TfiI GAWTC 2 cut(s) 321, 351
Tru1I TTAA 3 cut(s) 191, 507, 642
Tru9I TTAA 3 cut(s) 191, 507, 642
TscAI CASTG 2 cut(s) 523, 804
TseFI GTSAC 1 cut(s) 166
TseI GCWGC 5 cut(s) 427, 487, 656, 831, 909
Tsp45I GTSAC 1 cut(s) 166
TspDTI ATGAA 3 cut(s) 239, 285, 648
TspGWI ACGGA 2 cut(s) 185, 768
TspRI CASTG 2 cut(s) 523, 804
VpaK11BI GGWCC 2 cut(s) 54, 691
XapI RAATTY 3 cut(s) 503, 549, 731
XcmI CCANNNNNNNNNTGG 1 cut(s) 131
XhoI CTCGAG 1 cut(s) 864
XmaJI CCTAGG 1 cut(s) 557
XspI CTAG 1 cut(s) 558
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.