Rh7CG498500

Protein of unknown function (DUF4057)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7C
OG0011778
Physical Location & Seq
Reverse (-)
67297108 .. 67301618
4511 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7CG498500.1

Sequence Viewer

Length: 735 bp
ATGTCCAGAAAACCTTGTTCGGGGTACAAGATGAAGGAGATGACTGGGAGTGGCATTTTTACTGGGGGAGCGGATGATGAAGCATCAGAACCTGGTAGTGCTAATCCTACCCCAAATAGCAAAAGCGGAATCCGACTGTACCAGCAAGCGGTTACTGGAATCAGTCATATCTCATTTGGTGAGGAAGAGGGTGTTGCTCCCAAAAAGCCTACTACAATTGCTGAAGTTGCAAAGCTGCGCGAGCTGAGTGGAACCTTGGAAACTGAGGCAGAGGCAGAGGCAAGGCTGAAGAAGCAGCTTTCAGACTCTAAATTTAAGGAGCTCAGTGGGCATGACATATTTGCACCCCCTCCTGAAATTTTACCTAGGGAAACTACCGCTCCACGAGCGCTGGCTTTGAAAGGAAGCATTCAAATAGGGGAACCTACTTCACCAGTACATGAACCTGTTAAGGTGTCTAAAGCTGCTGGAGGTCAGAACAATGTTATACCAGGTGAGGACCCTGTGTCCAAGACGGCGAAGAAGATTTATGACAAGAAATTTTCCGAGCTGTCAGGAAATGACATATTCAAGGGCGATGTTCCTCCGTCCTCTGCTGAGAAACCACTGAGTGTGGCAAAATTGCGGGAGATGAGTGGCAGCAACATCTTTGCCGACGGGAAGGCAGAGGCTCGAGAATATTTGGGTGGCGTACGCAAACCCCCTGGTGGCGAGAGCAGCATTGCTTTGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4057

Protein Analysis

244

Amino Acids

25.73

Weight (kDa)

6.87

Isoelectric Point (pI)

38.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4057 PF13266 2 - 242 1.2e-112 Protein of unknown function (DUF4057)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011778)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78150 AT1G78150 AT1G78150
fragaria_vesca FvH4_5g37630
malus_domestica MD08G1181800.v1.1 MD15G1367100.v1.1
prunus_persica Prupe.1G515000_v2.0.a1
pyrus_communis pycom08g15500 pycom15g32910
rosa_chinensis RchiOBHm_Chr7g0239311
rosa_laevigata RLG00000000764
rosa_multiflora Rmu_sc0007840.1_g000003
rosa_roxburghii Rroxscaffold_3G00221030
rosa_rugosa Rorug07G0327200
rosa_samantha Rh7AG480600 Rh7BG453300 Rh7CG498500 Rh7DG466600
rosa_wichuraiana Rw7G040260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 71, 380
AccII CGCG 1 cut(s) 240
AciI CCGC 5 cut(s) 71, 126, 149, 378, 625
AcsI RAATTY 3 cut(s) 311, 357, 539
AcuI CTGAAG 2 cut(s) 243, 308
AdeI CACNNNGTG 1 cut(s) 611
AfaI GTAC 4 cut(s) 26, 140, 438, 693
AfeI AGCGCT 1 cut(s) 390
AfiI CCNNNNNNNGG 3 cut(s) 20, 148, 707
AgsI TTSAA 3 cut(s) 400, 413, 571
AhdI GACNNNNNGTC 1 cut(s) 505
AjnI CCWGG 3 cut(s) 91, 490, 703
AluBI AGCT 6 cut(s) 235, 244, 298, 322, 464, 550
AluI AGCT 6 cut(s) 235, 244, 298, 322, 464, 550
Alw21I GWGCWC 1 cut(s) 324
AlwNI CAGNNNCTG 1 cut(s) 92
Ama87I CYCGRG 1 cut(s) 672
Aor51HI AGCGCT 1 cut(s) 390
ApeKI GCWGC 5 cut(s) 235, 295, 464, 639, 717
ApoI RAATTY 3 cut(s) 311, 357, 539
AspA2I CCTAGG 1 cut(s) 365
AspLEI GCGC 2 cut(s) 240, 391
AspS9I GGNCC 1 cut(s) 499
AsuHPI GGTGA 3 cut(s) 191, 423, 506
AvaI CYCGRG 1 cut(s) 672
AvaII GGWCC 1 cut(s) 499
AvrII CCTAGG 1 cut(s) 365
BanII GRGCYC 1 cut(s) 324
BauI CACGAG 1 cut(s) 384
Bbv12I GWGCWC 1 cut(s) 324
BbvI GCAGC 5 cut(s) 222, 307, 451, 651, 729
BceAI ACGGC 1 cut(s) 531
BciT130I CCWGG 3 cut(s) 93, 492, 705
BfaI CTAG 1 cut(s) 366
BfoI RGCGCY 1 cut(s) 392
BisI GCNGC 5 cut(s) 236, 296, 465, 640, 718
BlnI CCTAGG 1 cut(s) 365
BlsI GCNGC 5 cut(s) 237, 297, 466, 641, 719
Bme1390I CCNGG 3 cut(s) 93, 492, 705
Bme18I GGWCC 1 cut(s) 499
BmeRI GACNNNNNGTC 1 cut(s) 505
BmeT110I CYCGRG 1 cut(s) 672
BmgT120I GGNCC 1 cut(s) 499
BmiI GGNNCC 3 cut(s) 253, 423, 501
BmrFI CCNGG 3 cut(s) 93, 492, 705
BmrI ACTGGG 2 cut(s) 54, 72
BmsI GCATC 1 cut(s) 92
BmuI ACTGGG 2 cut(s) 54, 72
BpmI CTGGAG 1 cut(s) 489
BsaJI CCNNGG 3 cut(s) 255, 365, 703
BsaXI ACNNNNNCTCC 2 cut(s) 364, 394
Bsc4I CCNNNNNNNGG 3 cut(s) 20, 148, 707
Bse1I ACTGG 4 cut(s) 49, 67, 160, 434
Bse3DI GCAATG 1 cut(s) 720
BseBI CCWGG 3 cut(s) 93, 492, 705
BseDI CCNNGG 3 cut(s) 255, 365, 703
BseGI GGATG 1 cut(s) 79
BseLI CCNNNNNNNGG 3 cut(s) 20, 148, 707
BseMI GCAATG 1 cut(s) 720
BseMII CTCAG 5 cut(s) 236, 255, 337, 588, 599
BseNI ACTGG 4 cut(s) 49, 67, 160, 434
BseXI GCAGC 5 cut(s) 222, 307, 451, 651, 729
Bsh1236I CGCG 1 cut(s) 240
BsiHKAI GWGCWC 1 cut(s) 324
BsiHKCI CYCGRG 1 cut(s) 672
BsiWI CGTACG 1 cut(s) 691
BslI CCNNNNNNNGG 3 cut(s) 20, 148, 707
BsmI GAATGC 1 cut(s) 408
BsoBI CYCGRG 1 cut(s) 672
Bsp1286I GDGCHC 1 cut(s) 324
BspACI CCGC 5 cut(s) 71, 126, 149, 378, 625
BspCNI CTCAG 5 cut(s) 237, 256, 336, 589, 600
BspFNI CGCG 1 cut(s) 240
BspLI GGNNCC 3 cut(s) 253, 423, 501
BsrBI CCGCTC 2 cut(s) 71, 380
BsrDI GCAATG 1 cut(s) 720
BsrI ACTGG 4 cut(s) 49, 67, 160, 434
BssECI CCNNGG 3 cut(s) 255, 365, 703
BssSI CACGAG 1 cut(s) 384
BssT1I CCWWGG 2 cut(s) 255, 365
Bst2BI CACGAG 1 cut(s) 384
Bst2UI CCWGG 3 cut(s) 93, 492, 705
Bst4CI ACNGT 1 cut(s) 138
Bst6I CTCTTC 1 cut(s) 180
BstC8I GCNNGC 3 cut(s) 147, 242, 393
BstDEI CTNAG 5 cut(s) 245, 264, 323, 597, 608
BstF5I GGATG 1 cut(s) 79
BstFNI CGCG 1 cut(s) 240
BstH2I RGCGCY 1 cut(s) 392
BstHHI GCGC 2 cut(s) 240, 391
BstMWI GCNNNNNNNGC 6 cut(s) 227, 241, 292, 328, 386, 717
BstNI CCWGG 3 cut(s) 93, 492, 705
BstSCI CCNGG 3 cut(s) 91, 490, 703
BstUI CGCG 1 cut(s) 240
BstV1I GCAGC 5 cut(s) 222, 307, 451, 651, 729
BtgZI GCGATG 1 cut(s) 591
BtsCI GGATG 1 cut(s) 79
BtsIMutI CAGTG 2 cut(s) 331, 605
Cac8I GCNNGC 3 cut(s) 147, 242, 393
CaiI CAGNNNCTG 1 cut(s) 92
CfoI GCGC 2 cut(s) 240, 391
Cfr13I GGNCC 1 cut(s) 499
CsiI ACCWGGT 2 cut(s) 91, 490
Csp6I GTAC 4 cut(s) 25, 139, 437, 692
CviAII CATG 2 cut(s) 332, 440
CviQI GTAC 4 cut(s) 25, 139, 437, 692
DdeI CTNAG 5 cut(s) 245, 264, 323, 597, 608
DraIII CACNNNGTG 1 cut(s) 611
DriI GACNNNNNGTC 1 cut(s) 505
Eam1104I CTCTTC 1 cut(s) 180
Eam1105I GACNNNNNGTC 1 cut(s) 505
EarI CTCTTC 1 cut(s) 180
Ecl136II GAGCTC 1 cut(s) 322
Eco130I CCWWGG 2 cut(s) 255, 365
Eco24I GRGCYC 1 cut(s) 324
Eco47I GGWCC 1 cut(s) 499
Eco47III AGCGCT 1 cut(s) 390
Eco53kI GAGCTC 1 cut(s) 322
Eco57I CTGAAG 2 cut(s) 243, 308
Eco88I CYCGRG 1 cut(s) 672
EcoICRI GAGCTC 1 cut(s) 322
EcoO109I RGGNCCY 1 cut(s) 499
EcoRII CCWGG 3 cut(s) 91, 490, 703
EcoT14I CCWWGG 2 cut(s) 255, 365
EcoT38I GRGCYC 1 cut(s) 324
ErhI CCWWGG 2 cut(s) 255, 365
FaeI CATG 2 cut(s) 335, 443
FaiI YATR 8 cut(s) 168, 333, 338, 441, 488, 531, 566, 733
FatI CATG 2 cut(s) 331, 439
FauI CCCGC 1 cut(s) 618
Fnu4HI GCNGC 5 cut(s) 236, 296, 465, 640, 718
FokI GGATG 1 cut(s) 86
FriOI GRGCYC 1 cut(s) 324
Fsp4HI GCNGC 5 cut(s) 236, 296, 465, 640, 718
FspBI CTAG 1 cut(s) 366
GlaI GCGC 2 cut(s) 239, 390
GluI GCNGC 5 cut(s) 236, 296, 465, 640, 718
GsuI CTGGAG 1 cut(s) 489
HaeII RGCGCY 1 cut(s) 392
HhaI GCGC 2 cut(s) 240, 391
Hin1II CATG 2 cut(s) 335, 443
Hin6I GCGC 2 cut(s) 238, 389
HinP1I GCGC 2 cut(s) 238, 389
HinfI GANTC 3 cut(s) 129, 159, 305
HphI GGTGA 3 cut(s) 191, 423, 506
Hpy188I TCNGA 5 cut(s) 88, 134, 304, 477, 547
Hpy188III TCNNGA 4 cut(s) 6, 353, 555, 674
Hpy99I CGWCG 1 cut(s) 659
HpyAV CCTTC 2 cut(s) 28, 655
HpyCH4III ACNGT 1 cut(s) 138
HpyCH4V TGCA 2 cut(s) 230, 344
HpyF10VI GCNNNNNNNGC 6 cut(s) 227, 241, 292, 328, 386, 717
HpyF3I CTNAG 5 cut(s) 245, 264, 323, 597, 608
Hsp92II CATG 2 cut(s) 335, 443
HspAI GCGC 2 cut(s) 238, 389
LmnI GCTCC 4 cut(s) 68, 202, 319, 385
Lsp1109I GCAGC 5 cut(s) 222, 307, 451, 651, 729
LweI GCATC 1 cut(s) 92
MabI ACCWGGT 2 cut(s) 91, 490
MaeI CTAG 1 cut(s) 366
MaeIII GTNAC 1 cut(s) 151
MbiI CCGCTC 2 cut(s) 71, 380
MboII GAAGA 4 cut(s) 197, 301, 532, 535
MfeI CAATTG 1 cut(s) 216
MhlI GDGCHC 1 cut(s) 324
MluCI AATT 5 cut(s) 216, 311, 357, 539, 620
MlyI GAGTC 1 cut(s) 299
MmeI TCCRAC 1 cut(s) 157
MseI TTAA 2 cut(s) 315, 450
MspR9I CCNGG 3 cut(s) 93, 492, 705
MunI CAATTG 1 cut(s) 216
Mva1269I GAATGC 1 cut(s) 408
MvaI CCWGG 3 cut(s) 93, 492, 705
MvnI CGCG 1 cut(s) 240
MwoI GCNNNNNNNGC 6 cut(s) 227, 241, 292, 328, 386, 717
NlaIII CATG 2 cut(s) 335, 443
NlaIV GGNNCC 3 cut(s) 253, 423, 501
PaeR7I CTCGAG 1 cut(s) 672
PctI GAATGC 1 cut(s) 408
PfeI GAWTC 2 cut(s) 129, 159
Pfl23II CGTACG 1 cut(s) 691
PkrI GCNGC 5 cut(s) 237, 297, 466, 641, 719
PleI GAGTC 1 cut(s) 299
PpsI GAGTC 1 cut(s) 299
PpuMI RGGWCCY 1 cut(s) 499
Psp124BI GAGCTC 1 cut(s) 324
Psp5II RGGWCCY 1 cut(s) 499
Psp6I CCWGG 3 cut(s) 91, 490, 703
PspGI CCWGG 3 cut(s) 91, 490, 703
PspLI CGTACG 1 cut(s) 691
PspN4I GGNNCC 3 cut(s) 253, 423, 501
PspPI GGNCC 1 cut(s) 499
PspPPI RGGWCCY 1 cut(s) 499
PstNI CAGNNNCTG 1 cut(s) 92
RsaI GTAC 4 cut(s) 26, 140, 438, 693
RsaNI GTAC 4 cut(s) 25, 139, 437, 692
SacI GAGCTC 1 cut(s) 324
SaqAI TTAA 2 cut(s) 315, 450
SatI GCNGC 5 cut(s) 236, 296, 465, 640, 718
Sau96I GGNCC 1 cut(s) 499
SchI GAGTC 1 cut(s) 299
ScrFI CCNGG 3 cut(s) 93, 492, 705
SduI GDGCHC 1 cut(s) 324
SexAI ACCWGGT 2 cut(s) 91, 490
SfaNI GCATC 1 cut(s) 92
Sfr274I CTCGAG 1 cut(s) 672
SinI GGWCC 1 cut(s) 499
SlaI CTCGAG 1 cut(s) 672
SmlI CTYRAG 1 cut(s) 672
SmoI CTYRAG 1 cut(s) 672
Sse9I AATT 5 cut(s) 216, 311, 357, 539, 620
SsiI CCGC 5 cut(s) 71, 126, 149, 378, 625
SspI AATATT 1 cut(s) 680
SspMI CTAG 1 cut(s) 366
SstI GAGCTC 1 cut(s) 324
StyD4I CCNGG 3 cut(s) 91, 490, 703
StyI CCWWGG 2 cut(s) 255, 365
TaaI ACNGT 1 cut(s) 138
TaqI TCGA 1 cut(s) 673
TasI AATT 5 cut(s) 216, 311, 357, 539, 620
TatI WGTACW 1 cut(s) 436
TfiI GAWTC 2 cut(s) 129, 159
Tru1I TTAA 2 cut(s) 315, 450
Tru9I TTAA 2 cut(s) 315, 450
TscAI CASTG 2 cut(s) 331, 612
TseI GCWGC 5 cut(s) 235, 295, 464, 639, 717
TspDTI ATGAA 3 cut(s) 47, 93, 456
TspGWI ACGGA 1 cut(s) 576
TspRI CASTG 2 cut(s) 331, 612
VpaK11BI GGWCC 1 cut(s) 499
XapI RAATTY 3 cut(s) 311, 357, 539
XhoI CTCGAG 1 cut(s) 672
XmaJI CCTAGG 1 cut(s) 365
XspI CTAG 1 cut(s) 366
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.