MD15G1367100.v1.1

Protein of unknown function (DUF4057)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr15
OG0011778
Physical Location & Seq
Forward (+)
44684833 .. 44687260
2428 bp
Loading structure...
UTR
Exon/CDS
Intron
MD15G1367100.v1.1.491

Sequence Viewer

Length: 918 bp
ATGGAGAGAAGCACTCCGGTGAGGAAGCCCCACACGTCCACCGCGGATCTGCTCACCTGGTCCGAGACTCCGCTGGCTGATTCTCCTCTTCCATCTTCCGCCTCGCGGCCCCACCAGCCGTCGGATGGGATCAGAAAGGTGGTGTTTGGAGGGCAGGTGACGGACGAGGAGGTCGAGAGCTTGAACAAACGCAAACCTTGTTCAGCGCATAAGATGAAGGAGATCACCGGGAGTGGCATTTTTGCACCGAAAGCAGAAAATGATGCCGCGGAAGCTGATGGTGCGAACCCTACCCTAAAGCCAGGAATTCGAATGTACCAGCAAGCGGTTGCTGGAATCAGTCATATCTCGTTTGGTGATGAAGAGAGTGTTTCTCCCAAAAAGCCTACTACCATTCCCGAAGTGGCAAAGCAGCGGGAGCTAAGTGGAACCTTGGAAACGGAAGCAGAGAGAGAGGCAAGGCTGAAGAAGCAGCTCTCTGAATCTAAATTCAAGGAGCTTAGTGGCCATGACATATTTGCGCCCCCTCCTGAAATTTTACCCAGGACAACTACCGCTCCTCGTGCTTTGGCCTTGAAGGGAAGCATTGAGATAGGAGAACCTACTTCACCCAACGGTCGCACGCCTGTTAAGAAGGTTTCTAATCCTGGTGGGGGTCAGAGCAATATAACATCCATCGAGGAACCAGCGCCCAAGACAGCCAAGAAGATTTATGACAAGAAGTTTTCCGAGCTCTCAGGAAATGATATATTCAAGGGCGATGTTCCTCCTTCGTCAGCTGAAAAACCACTGAGTTCGGCAAAACTACGAGAGATGAGCGGCAGCAACATCTTTGCGGATGGGAAGAAAGAGGCTCGAGACTACTTAGGAGGTGTACGCAAACCCCCAGGTGGAGAGAGTAGCATTGCTTTGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4057

Protein Analysis

306

Amino Acids

32.6

Weight (kDa)

8.74

Isoelectric Point (pI)

52.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4057 PF13266 3 - 303 1e-147 Protein of unknown function (DUF4057)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011778)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78150 AT1G78150 AT1G78150
fragaria_vesca FvH4_5g37630
malus_domestica MD08G1181800.v1.1 MD15G1367100.v1.1
prunus_persica Prupe.1G515000_v2.0.a1
pyrus_communis pycom08g15500 pycom15g32910
rosa_chinensis RchiOBHm_Chr7g0239311
rosa_laevigata RLG00000000764
rosa_multiflora Rmu_sc0007840.1_g000003
rosa_roxburghii Rroxscaffold_3G00221030
rosa_rugosa Rorug07G0327200
rosa_samantha Rh7AG480600 Rh7BG453300 Rh7CG498500 Rh7DG466600
rosa_wichuraiana Rw7G040260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 145
AasI GACNNNNNNGTC 1 cut(s) 170
Acc36I ACCTGC 1 cut(s) 145
AccBSI CCGCTC 2 cut(s) 557, 819
AccII CGCG 3 cut(s) 44, 106, 269
AclWI GGATC 2 cut(s) 54, 137
AcoI YGGCCR 1 cut(s) 505
AcsI RAATTY 3 cut(s) 306, 488, 534
AcuI CTGAAG 1 cut(s) 485
AfaI GTAC 2 cut(s) 317, 876
AfiI CCNNNNNNNGG 6 cut(s) 105, 121, 125, 325, 653, 890
AflIII ACRYGT 1 cut(s) 33
AgsI TTSAA 4 cut(s) 184, 493, 577, 754
AjiI CACGTC 1 cut(s) 36
AjnI CCWGG 5 cut(s) 56, 301, 542, 646, 886
AleI CACNNNNGTG 1 cut(s) 17
AluBI AGCT 7 cut(s) 180, 275, 421, 475, 499, 733, 779
AluI AGCT 7 cut(s) 180, 275, 421, 475, 499, 733, 779
Alw21I GWGCWC 1 cut(s) 735
Alw26I GTCTC 2 cut(s) 59, 852
AlwI GGATC 2 cut(s) 54, 137
Ama87I CYCGRG 1 cut(s) 855
AoxI GGCC 3 cut(s) 107, 505, 570
ApeKI GCWGC 3 cut(s) 412, 472, 822
ApoI RAATTY 3 cut(s) 306, 488, 534
AspLEI GCGC 3 cut(s) 208, 523, 691
AspS9I GGNCC 2 cut(s) 60, 108
AsuC2I CCSGG 1 cut(s) 229
AsuHPI GGTGA 6 cut(s) 31, 46, 169, 217, 368, 600
AsuII TTCGAA 1 cut(s) 310
AvaI CYCGRG 1 cut(s) 855
AvaII GGWCC 1 cut(s) 60
BalI TGGCCA 1 cut(s) 507
BanII GRGCYC 1 cut(s) 735
BauI CACGAG 1 cut(s) 561
Bbv12I GWGCWC 1 cut(s) 735
BbvI GCAGC 3 cut(s) 424, 484, 834
BccI CCATC 5 cut(s) 100, 119, 272, 683, 833
BceAI ACGGC 1 cut(s) 103
BciT130I CCWGG 5 cut(s) 58, 303, 544, 648, 888
BcnI CCSGG 1 cut(s) 229
BcoDI GTCTC 2 cut(s) 59, 852
BfoI RGCGCY 1 cut(s) 692
BfuAI ACCTGC 1 cut(s) 145
BisI GCNGC 6 cut(s) 107, 267, 413, 473, 820, 823
BlsI GCNGC 6 cut(s) 108, 268, 414, 474, 821, 824
Bme1390I CCNGG 6 cut(s) 58, 229, 303, 544, 648, 888
Bme18I GGWCC 1 cut(s) 60
BmeT110I CYCGRG 1 cut(s) 855
BmgBI CACGTC 1 cut(s) 36
BmgT120I GGNCC 2 cut(s) 60, 108
BmiI GGNNCC 3 cut(s) 110, 430, 684
BmrFI CCNGG 6 cut(s) 58, 229, 303, 544, 648, 888
BmsI GCATC 1 cut(s) 253
BplI GAGNNNNNCTC 3 cut(s) 30, 358, 390
Bpu14I TTCGAA 1 cut(s) 310
BpuMI CCSGG 1 cut(s) 229
BsaJI CCNNGG 5 cut(s) 42, 267, 432, 542, 886
BsaWI WCCGGW 1 cut(s) 16
BsaXI ACNNNNNCTCC 4 cut(s) 141, 171, 541, 571
Bsc4I CCNNNNNNNGG 6 cut(s) 105, 121, 125, 325, 653, 890
Bse3DI GCAATG 1 cut(s) 903
BseBI CCWGG 5 cut(s) 58, 303, 544, 648, 888
BseDI CCNNGG 5 cut(s) 42, 267, 432, 542, 886
BseGI GGATG 3 cut(s) 130, 671, 844
BseLI CCNNNNNNNGG 6 cut(s) 105, 121, 125, 325, 653, 890
BseMI GCAATG 1 cut(s) 903
BseMII CTCAG 2 cut(s) 750, 782
BseRI GAGGAG 3 cut(s) 75, 182, 549
BseXI GCAGC 3 cut(s) 424, 484, 834
Bsh1236I CGCG 3 cut(s) 44, 106, 269
Bsh1285I CGRYCG 1 cut(s) 619
BshFI GGCC 3 cut(s) 109, 507, 572
BsiEI CGRYCG 1 cut(s) 619
BsiHKAI GWGCWC 1 cut(s) 735
BsiHKCI CYCGRG 1 cut(s) 855
BsiSI CCGG 2 cut(s) 17, 228
BslI CCNNNNNNNGG 6 cut(s) 105, 121, 125, 325, 653, 890
BsmAI GTCTC 2 cut(s) 59, 852
BsnI GGCC 3 cut(s) 109, 507, 572
BsoBI CYCGRG 1 cut(s) 855
Bsp119I TTCGAA 1 cut(s) 310
Bsp1286I GDGCHC 1 cut(s) 735
Bsp143I GATC 3 cut(s) 46, 129, 222
BspANI GGCC 3 cut(s) 109, 507, 572
BspCNI CTCAG 2 cut(s) 749, 783
BspFNI CGCG 3 cut(s) 44, 106, 269
BspLI GGNNCC 3 cut(s) 110, 430, 684
BspMI ACCTGC 1 cut(s) 145
BspPI GGATC 2 cut(s) 54, 137
BspT104I TTCGAA 1 cut(s) 310
BsrBI CCGCTC 2 cut(s) 557, 819
BsrDI GCAATG 1 cut(s) 903
BssECI CCNNGG 5 cut(s) 42, 267, 432, 542, 886
BssMI GATC 3 cut(s) 46, 129, 222
BssSI CACGAG 1 cut(s) 561
BssT1I CCWWGG 1 cut(s) 432
Bst2BI CACGAG 1 cut(s) 561
Bst2UI CCWGG 5 cut(s) 58, 303, 544, 648, 888
Bst4CI ACNGT 1 cut(s) 617
Bst6I CTCTTC 2 cut(s) 93, 357
BstBI TTCGAA 1 cut(s) 310
BstC8I GCNNGC 3 cut(s) 75, 324, 623
BstDEI CTNAG 5 cut(s) 422, 500, 736, 791, 865
BstDSI CCRYGG 2 cut(s) 42, 267
BstF5I GGATG 3 cut(s) 130, 671, 844
BstFNI CGCG 3 cut(s) 44, 106, 269
BstH2I RGCGCY 1 cut(s) 692
BstHHI GCGC 3 cut(s) 208, 523, 691
BstKTI GATC 3 cut(s) 49, 132, 225
BstMAI GTCTC 2 cut(s) 59, 852
BstMBI GATC 3 cut(s) 46, 129, 222
BstMCI CGRYCG 1 cut(s) 619
BstMWI GCNNNNNNNGC 7 cut(s) 115, 251, 272, 281, 418, 469, 563
BstNI CCWGG 5 cut(s) 58, 303, 544, 648, 888
BstSCI CCNGG 6 cut(s) 56, 227, 301, 542, 646, 886
BstUI CGCG 3 cut(s) 44, 106, 269
BstV1I GCAGC 3 cut(s) 424, 484, 834
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
BsuRI GGCC 3 cut(s) 109, 507, 572
BtgI CCRYGG 2 cut(s) 42, 267
BtgZI GCGATG 1 cut(s) 774
BtrI CACGTC 1 cut(s) 36
BtsCI GGATG 3 cut(s) 130, 671, 844
BtsIMutI CAGTG 1 cut(s) 788
BveI ACCTGC 1 cut(s) 145
Cac8I GCNNGC 3 cut(s) 75, 324, 623
CfoI GCGC 3 cut(s) 208, 523, 691
Cfr13I GGNCC 2 cut(s) 60, 108
Cfr42I CCGCGG 2 cut(s) 45, 270
CsiI ACCWGGT 1 cut(s) 56
Csp6I GTAC 2 cut(s) 316, 875
CviAII CATG 1 cut(s) 509
CviQI GTAC 2 cut(s) 316, 875
DdeI CTNAG 5 cut(s) 422, 500, 736, 791, 865
DpnI GATC 3 cut(s) 48, 131, 224
DpnII GATC 3 cut(s) 46, 129, 222
DrdI GACNNNNNNGTC 1 cut(s) 170
DseDI GACNNNNNNGTC 1 cut(s) 170
EaeI YGGCCR 1 cut(s) 505
Eam1104I CTCTTC 2 cut(s) 93, 357
EarI CTCTTC 2 cut(s) 93, 357
EciI GGCGGA 1 cut(s) 88
Ecl136II GAGCTC 1 cut(s) 733
Eco130I CCWWGG 1 cut(s) 432
Eco24I GRGCYC 1 cut(s) 735
Eco47I GGWCC 1 cut(s) 60
Eco53kI GAGCTC 1 cut(s) 733
Eco57I CTGAAG 1 cut(s) 485
Eco88I CYCGRG 1 cut(s) 855
EcoICRI GAGCTC 1 cut(s) 733
EcoRI GAATTC 1 cut(s) 306
EcoRII CCWGG 5 cut(s) 56, 301, 542, 646, 886
EcoT14I CCWWGG 1 cut(s) 432
EcoT38I GRGCYC 1 cut(s) 735
ErhI CCWWGG 1 cut(s) 432
FaeI CATG 1 cut(s) 512
FaiI YATR 7 cut(s) 210, 345, 510, 515, 668, 714, 749
FatI CATG 1 cut(s) 508
FauI CCCGC 1 cut(s) 408
Fnu4HI GCNGC 6 cut(s) 107, 267, 413, 473, 820, 823
FokI GGATG 3 cut(s) 137, 658, 851
FriOI GRGCYC 1 cut(s) 735
Fsp4HI GCNGC 6 cut(s) 107, 267, 413, 473, 820, 823
GlaI GCGC 3 cut(s) 207, 522, 690
GluI GCNGC 6 cut(s) 107, 267, 413, 473, 820, 823
HaeII RGCGCY 1 cut(s) 692
HaeIII GGCC 3 cut(s) 109, 507, 572
HapII CCGG 2 cut(s) 17, 228
HhaI GCGC 3 cut(s) 208, 523, 691
Hin1II CATG 1 cut(s) 512
Hin6I GCGC 3 cut(s) 206, 521, 689
HinP1I GCGC 3 cut(s) 206, 521, 689
HinfI GANTC 4 cut(s) 67, 80, 336, 482
HpaII CCGG 2 cut(s) 17, 228
HphI GGTGA 6 cut(s) 31, 46, 169, 217, 368, 600
Hpy166II GTNNAC 2 cut(s) 39, 875
Hpy188I TCNGA 6 cut(s) 64, 124, 134, 481, 660, 730
Hpy188III TCNNGA 5 cut(s) 175, 398, 530, 738, 857
Hpy8I GTNNAC 2 cut(s) 39, 875
Hpy99I CGWCG 1 cut(s) 124
HpyAV CCTTC 4 cut(s) 211, 571, 628, 780
HpyCH4III ACNGT 1 cut(s) 617
HpyCH4IV ACGT 1 cut(s) 35
HpyCH4V TGCA 1 cut(s) 245
HpyF10VI GCNNNNNNNGC 7 cut(s) 115, 251, 272, 281, 418, 469, 563
HpyF3I CTNAG 5 cut(s) 422, 500, 736, 791, 865
HpySE526I ACGT 1 cut(s) 35
Hsp92II CATG 1 cut(s) 512
HspAI GCGC 3 cut(s) 206, 521, 689
KspI CCGCGG 2 cut(s) 45, 270
Kzo9I GATC 3 cut(s) 46, 129, 222
LmnI GCTCC 3 cut(s) 418, 496, 562
Lsp1109I GCAGC 3 cut(s) 424, 484, 834
LweI GCATC 1 cut(s) 253
MabI ACCWGGT 1 cut(s) 56
MaeII ACGT 1 cut(s) 35
MaeIII GTNAC 1 cut(s) 157
MalI GATC 3 cut(s) 48, 131, 224
MbiI CCGCTC 2 cut(s) 557, 819
MboI GATC 3 cut(s) 46, 129, 222
MboII GAAGA 6 cut(s) 80, 87, 374, 478, 718, 856
MflI RGATCY 1 cut(s) 46
MhlI GDGCHC 1 cut(s) 735
MlsI TGGCCA 1 cut(s) 507
MluCI AATT 3 cut(s) 306, 488, 534
MluNI TGGCCA 1 cut(s) 507
MlyI GAGTC 1 cut(s) 61
MmeI TCCRAC 1 cut(s) 102
Mox20I TGGCCA 1 cut(s) 507
MscI TGGCCA 1 cut(s) 507
MseI TTAA 2 cut(s) 630, 916
MslI CAYNNNNRTG 1 cut(s) 17
Msp20I TGGCCA 1 cut(s) 507
MspA1I CMGCKG 5 cut(s) 44, 73, 269, 415, 779
MspI CCGG 2 cut(s) 17, 228
MspR9I CCNGG 6 cut(s) 58, 229, 303, 544, 648, 888
MvaI CCWGG 5 cut(s) 58, 303, 544, 648, 888
MvnI CGCG 3 cut(s) 44, 106, 269
MwoI GCNNNNNNNGC 7 cut(s) 115, 251, 272, 281, 418, 469, 563
NciI CCSGG 1 cut(s) 229
NdeII GATC 3 cut(s) 46, 129, 222
NlaIII CATG 1 cut(s) 512
NlaIV GGNNCC 3 cut(s) 110, 430, 684
NmuCI GTSAC 1 cut(s) 157
NspV TTCGAA 1 cut(s) 310
OliI CACNNNNGTG 1 cut(s) 17
PaeR7I CTCGAG 1 cut(s) 855
PaqCI CACCTGC 1 cut(s) 145
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PfeI GAWTC 3 cut(s) 80, 336, 482
PkrI GCNGC 6 cut(s) 108, 268, 414, 474, 821, 824
PleI GAGTC 1 cut(s) 61
PpsI GAGTC 1 cut(s) 61
Psp124BI GAGCTC 1 cut(s) 735
Psp6I CCWGG 5 cut(s) 56, 301, 542, 646, 886
PspGI CCWGG 5 cut(s) 56, 301, 542, 646, 886
PspN4I GGNNCC 3 cut(s) 110, 430, 684
PspPI GGNCC 2 cut(s) 60, 108
PsuI RGATCY 1 cut(s) 46
PvuII CAGCTG 1 cut(s) 779
RsaI GTAC 2 cut(s) 317, 876
RsaNI GTAC 2 cut(s) 316, 875
RseI CAYNNNNRTG 1 cut(s) 17
SacI GAGCTC 1 cut(s) 735
SacII CCGCGG 2 cut(s) 45, 270
SaqAI TTAA 2 cut(s) 630, 916
SatI GCNGC 6 cut(s) 107, 267, 413, 473, 820, 823
Sau3AI GATC 3 cut(s) 46, 129, 222
Sau96I GGNCC 2 cut(s) 60, 108
SchI GAGTC 1 cut(s) 61
ScrFI CCNGG 6 cut(s) 58, 229, 303, 544, 648, 888
SduI GDGCHC 1 cut(s) 735
SexAI ACCWGGT 1 cut(s) 56
SfaNI GCATC 1 cut(s) 253
Sfr274I CTCGAG 1 cut(s) 855
Sfr303I CCGCGG 2 cut(s) 45, 270
SfuI TTCGAA 1 cut(s) 310
SgrBI CCGCGG 2 cut(s) 45, 270
SinI GGWCC 1 cut(s) 60
SlaI CTCGAG 1 cut(s) 855
SmiMI CAYNNNNRTG 1 cut(s) 17
SmlI CTYRAG 1 cut(s) 855
SmoI CTYRAG 1 cut(s) 855
Sse9I AATT 3 cut(s) 306, 488, 534
SstI GAGCTC 1 cut(s) 735
StyD4I CCNGG 6 cut(s) 56, 227, 301, 542, 646, 886
StyI CCWWGG 1 cut(s) 432
TaaI ACNGT 1 cut(s) 617
TaiI ACGT 1 cut(s) 38
TaqI TCGA 4 cut(s) 174, 310, 678, 856
TasI AATT 3 cut(s) 306, 488, 534
TauI GCSGC 3 cut(s) 109, 269, 822
TfiI GAWTC 3 cut(s) 80, 336, 482
Tru1I TTAA 2 cut(s) 630, 916
Tru9I TTAA 2 cut(s) 630, 916
TscAI CASTG 1 cut(s) 795
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 3 cut(s) 412, 472, 822
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 2 cut(s) 230, 375
TspGWI ACGGA 2 cut(s) 176, 455
TspRI CASTG 1 cut(s) 795
VpaK11BI GGWCC 1 cut(s) 60
XapI RAATTY 3 cut(s) 306, 488, 534
XcmI CCANNNNNNNNNTGG 2 cut(s) 122, 400
XhoI CTCGAG 1 cut(s) 855
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.