Rh7DG466600

Protein of unknown function (DUF4057)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr7D
OG0011778
Physical Location & Seq
Reverse (-)
66580611 .. 66583183
2573 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh7DG466600.1

Sequence Viewer

Length: 819 bp
ATGTTCGGTTGGTGTCAGCCGTCGGATGGGATCAAAAAAGTGGTGTTTGGAGGTCAGGTGACGGATGAGGAGGTCGAGAGCTTAAACAAACGAAAACCTTGTTCGGGGTACAAGATGAAGGAGATGACTGGGAGTGGCATTTTTACTGGGGGAGCGGATGATGAAGCATCAGAACCTGGTAGTGCTAATCCTACCCCAAATAGCAAAAGCGGAATCCGACTGTACCAGCAAGCGGTTACTGGAATCAGTCATATCTCATTTGGTGAGGAAGAGGGTGTTGCTCCCAAAAAGCCTACTACAATTGCTGAAGTTGCAAAGCTGCGCGAGCTGAGTGGAACCTTGGAAACTGAGGCAGAGGCAGAGGCAAGGCTGAAGAAGCAGCTTTCAGACTCTAAATTTAAGGAGCTCAGTGGGCATGACATATTTGCACCCCCTCCTGAAATTTTACCTAGGGAAACTACCGCTCCACGAGCGCTGGCTTTGAAAGGAAGCATTCAAATAGGGGAACCTACTTCACCAGTACATGAACCTGTTAAGGTGTCTAAAGCTGCTGGAGGTCAGAACAATGTTATACCAGGTGAGGACCCTGTGTCCAAGACGGCGAAGAAGATTTATGACAAGAAATTTTCCGAGCTGTCAGGAAATGACATATTCAAGGGCGATGTTCCTCCGTCCTCTGCTGAGAAACCACTGAGTGTGGCAAAATTGCGGGAGATGAGTGGCAGCAACATCTTTGCCGACGGGAAGGCAGAGGCTCGAGAATATTTGGGTGGCGTACGCAAACCCCCTGGTGGCGAGAGCAGCATTGCTTTGGTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4057

Protein Analysis

272

Amino Acids

28.82

Weight (kDa)

6.06

Isoelectric Point (pI)

37.49

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF4057 PF13266 6 - 270 1.4e-128 Protein of unknown function (DUF4057)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011778)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78150 AT1G78150 AT1G78150
fragaria_vesca FvH4_5g37630
malus_domestica MD08G1181800.v1.1 MD15G1367100.v1.1
prunus_persica Prupe.1G515000_v2.0.a1
pyrus_communis pycom08g15500 pycom15g32910
rosa_chinensis RchiOBHm_Chr7g0239311
rosa_laevigata RLG00000000764
rosa_multiflora Rmu_sc0007840.1_g000003
rosa_roxburghii Rroxscaffold_3G00221030
rosa_rugosa Rorug07G0327200
rosa_samantha Rh7AG480600 Rh7BG453300 Rh7CG498500 Rh7DG466600
rosa_wichuraiana Rw7G040260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 2 cut(s) 155, 464
AccII CGCG 1 cut(s) 324
AciI CCGC 5 cut(s) 155, 210, 233, 462, 709
AclWI GGATC 1 cut(s) 38
AcsI RAATTY 3 cut(s) 395, 441, 623
AcuI CTGAAG 2 cut(s) 327, 392
AdeI CACNNNGTG 1 cut(s) 695
AfaI GTAC 4 cut(s) 110, 224, 522, 777
AfeI AGCGCT 1 cut(s) 474
AfiI CCNNNNNNNGG 4 cut(s) 26, 104, 232, 791
AgsI TTSAA 3 cut(s) 484, 497, 655
AhdI GACNNNNNGTC 1 cut(s) 589
AjnI CCWGG 3 cut(s) 175, 574, 787
AluBI AGCT 7 cut(s) 81, 319, 328, 382, 406, 548, 634
AluI AGCT 7 cut(s) 81, 319, 328, 382, 406, 548, 634
Alw21I GWGCWC 1 cut(s) 408
AlwI GGATC 1 cut(s) 38
AlwNI CAGNNNCTG 1 cut(s) 176
Ama87I CYCGRG 1 cut(s) 756
Aor51HI AGCGCT 1 cut(s) 474
ApeKI GCWGC 5 cut(s) 319, 379, 548, 723, 801
ApoI RAATTY 3 cut(s) 395, 441, 623
AspA2I CCTAGG 1 cut(s) 449
AspLEI GCGC 2 cut(s) 324, 475
AspS9I GGNCC 1 cut(s) 583
AsuHPI GGTGA 4 cut(s) 70, 275, 507, 590
AvaI CYCGRG 1 cut(s) 756
AvaII GGWCC 1 cut(s) 583
AvrII CCTAGG 1 cut(s) 449
BanII GRGCYC 1 cut(s) 408
BauI CACGAG 1 cut(s) 468
Bbv12I GWGCWC 1 cut(s) 408
BbvI GCAGC 5 cut(s) 306, 391, 535, 735, 813
BccI CCATC 1 cut(s) 20
BceAI ACGGC 2 cut(s) 4, 615
BciT130I CCWGG 3 cut(s) 177, 576, 789
BfaI CTAG 1 cut(s) 450
BfoI RGCGCY 1 cut(s) 476
BisI GCNGC 5 cut(s) 320, 380, 549, 724, 802
BlnI CCTAGG 1 cut(s) 449
BlsI GCNGC 5 cut(s) 321, 381, 550, 725, 803
Bme1390I CCNGG 3 cut(s) 177, 576, 789
Bme18I GGWCC 1 cut(s) 583
BmeRI GACNNNNNGTC 1 cut(s) 589
BmeT110I CYCGRG 1 cut(s) 756
BmgT120I GGNCC 1 cut(s) 583
BmiI GGNNCC 3 cut(s) 337, 507, 585
BmrFI CCNGG 3 cut(s) 177, 576, 789
BmrI ACTGGG 2 cut(s) 138, 156
BmsI GCATC 1 cut(s) 176
BmuI ACTGGG 2 cut(s) 138, 156
BpmI CTGGAG 1 cut(s) 573
BsaJI CCNNGG 3 cut(s) 339, 449, 787
BsaXI ACNNNNNCTCC 4 cut(s) 42, 72, 448, 478
Bsc4I CCNNNNNNNGG 4 cut(s) 26, 104, 232, 791
Bse1I ACTGG 4 cut(s) 133, 151, 244, 518
Bse3DI GCAATG 1 cut(s) 804
BseBI CCWGG 3 cut(s) 177, 576, 789
BseDI CCNNGG 3 cut(s) 339, 449, 787
BseGI GGATG 3 cut(s) 31, 70, 163
BseLI CCNNNNNNNGG 4 cut(s) 26, 104, 232, 791
BseMI GCAATG 1 cut(s) 804
BseMII CTCAG 5 cut(s) 320, 339, 421, 672, 683
BseNI ACTGG 4 cut(s) 133, 151, 244, 518
BseRI GAGGAG 1 cut(s) 83
BseXI GCAGC 5 cut(s) 306, 391, 535, 735, 813
Bsh1236I CGCG 1 cut(s) 324
BsiHKAI GWGCWC 1 cut(s) 408
BsiHKCI CYCGRG 1 cut(s) 756
BsiWI CGTACG 1 cut(s) 775
BslI CCNNNNNNNGG 4 cut(s) 26, 104, 232, 791
BsmI GAATGC 1 cut(s) 492
BsoBI CYCGRG 1 cut(s) 756
Bsp1286I GDGCHC 1 cut(s) 408
Bsp143I GATC 1 cut(s) 30
BspACI CCGC 5 cut(s) 155, 210, 233, 462, 709
BspCNI CTCAG 5 cut(s) 321, 340, 420, 673, 684
BspFNI CGCG 1 cut(s) 324
BspLI GGNNCC 3 cut(s) 337, 507, 585
BspPI GGATC 1 cut(s) 38
BsrBI CCGCTC 2 cut(s) 155, 464
BsrDI GCAATG 1 cut(s) 804
BsrI ACTGG 4 cut(s) 133, 151, 244, 518
BssECI CCNNGG 3 cut(s) 339, 449, 787
BssMI GATC 1 cut(s) 30
BssSI CACGAG 1 cut(s) 468
BssT1I CCWWGG 2 cut(s) 339, 449
Bst2BI CACGAG 1 cut(s) 468
Bst2UI CCWGG 3 cut(s) 177, 576, 789
Bst4CI ACNGT 1 cut(s) 222
Bst6I CTCTTC 1 cut(s) 264
BstC8I GCNNGC 3 cut(s) 231, 326, 477
BstDEI CTNAG 5 cut(s) 329, 348, 407, 681, 692
BstF5I GGATG 3 cut(s) 31, 70, 163
BstFNI CGCG 1 cut(s) 324
BstH2I RGCGCY 1 cut(s) 476
BstHHI GCGC 2 cut(s) 324, 475
BstKTI GATC 1 cut(s) 33
BstMBI GATC 1 cut(s) 30
BstMWI GCNNNNNNNGC 6 cut(s) 311, 325, 376, 412, 470, 801
BstNI CCWGG 3 cut(s) 177, 576, 789
BstSCI CCNGG 3 cut(s) 175, 574, 787
BstUI CGCG 1 cut(s) 324
BstV1I GCAGC 5 cut(s) 306, 391, 535, 735, 813
BtgZI GCGATG 1 cut(s) 675
BtsCI GGATG 3 cut(s) 31, 70, 163
BtsIMutI CAGTG 2 cut(s) 415, 689
Cac8I GCNNGC 3 cut(s) 231, 326, 477
CaiI CAGNNNCTG 1 cut(s) 176
CfoI GCGC 2 cut(s) 324, 475
Cfr13I GGNCC 1 cut(s) 583
CsiI ACCWGGT 2 cut(s) 175, 574
Csp6I GTAC 4 cut(s) 109, 223, 521, 776
CviAII CATG 2 cut(s) 416, 524
CviQI GTAC 4 cut(s) 109, 223, 521, 776
DdeI CTNAG 5 cut(s) 329, 348, 407, 681, 692
DpnI GATC 1 cut(s) 32
DpnII GATC 1 cut(s) 30
DraIII CACNNNGTG 1 cut(s) 695
DriI GACNNNNNGTC 1 cut(s) 589
Eam1104I CTCTTC 1 cut(s) 264
Eam1105I GACNNNNNGTC 1 cut(s) 589
EarI CTCTTC 1 cut(s) 264
Ecl136II GAGCTC 1 cut(s) 406
Eco130I CCWWGG 2 cut(s) 339, 449
Eco24I GRGCYC 1 cut(s) 408
Eco47I GGWCC 1 cut(s) 583
Eco47III AGCGCT 1 cut(s) 474
Eco53kI GAGCTC 1 cut(s) 406
Eco57I CTGAAG 2 cut(s) 327, 392
Eco88I CYCGRG 1 cut(s) 756
EcoICRI GAGCTC 1 cut(s) 406
EcoO109I RGGNCCY 1 cut(s) 583
EcoRII CCWGG 3 cut(s) 175, 574, 787
EcoT14I CCWWGG 2 cut(s) 339, 449
EcoT38I GRGCYC 1 cut(s) 408
ErhI CCWWGG 2 cut(s) 339, 449
FaeI CATG 2 cut(s) 419, 527
FaiI YATR 8 cut(s) 252, 417, 422, 525, 572, 615, 650, 817
FatI CATG 2 cut(s) 415, 523
FauI CCCGC 1 cut(s) 702
Fnu4HI GCNGC 5 cut(s) 320, 380, 549, 724, 802
FokI GGATG 3 cut(s) 38, 77, 170
FriOI GRGCYC 1 cut(s) 408
Fsp4HI GCNGC 5 cut(s) 320, 380, 549, 724, 802
FspBI CTAG 1 cut(s) 450
GlaI GCGC 2 cut(s) 323, 474
GluI GCNGC 5 cut(s) 320, 380, 549, 724, 802
GsuI CTGGAG 1 cut(s) 573
HaeII RGCGCY 1 cut(s) 476
HhaI GCGC 2 cut(s) 324, 475
Hin1II CATG 2 cut(s) 419, 527
Hin6I GCGC 2 cut(s) 322, 473
HinP1I GCGC 2 cut(s) 322, 473
HinfI GANTC 3 cut(s) 213, 243, 389
HphI GGTGA 4 cut(s) 70, 275, 507, 590
Hpy188I TCNGA 6 cut(s) 25, 172, 218, 388, 561, 631
Hpy188III TCNNGA 4 cut(s) 76, 437, 639, 758
Hpy99I CGWCG 2 cut(s) 25, 743
HpyAV CCTTC 2 cut(s) 112, 739
HpyCH4III ACNGT 1 cut(s) 222
HpyCH4V TGCA 2 cut(s) 314, 428
HpyF10VI GCNNNNNNNGC 6 cut(s) 311, 325, 376, 412, 470, 801
HpyF3I CTNAG 5 cut(s) 329, 348, 407, 681, 692
Hsp92II CATG 2 cut(s) 419, 527
HspAI GCGC 2 cut(s) 322, 473
Kzo9I GATC 1 cut(s) 30
LmnI GCTCC 4 cut(s) 152, 286, 403, 469
Lsp1109I GCAGC 5 cut(s) 306, 391, 535, 735, 813
LweI GCATC 1 cut(s) 176
MabI ACCWGGT 2 cut(s) 175, 574
MaeI CTAG 1 cut(s) 450
MaeIII GTNAC 2 cut(s) 58, 235
MalI GATC 1 cut(s) 32
MbiI CCGCTC 2 cut(s) 155, 464
MboI GATC 1 cut(s) 30
MboII GAAGA 4 cut(s) 281, 385, 616, 619
MfeI CAATTG 1 cut(s) 300
MhlI GDGCHC 1 cut(s) 408
MluCI AATT 5 cut(s) 300, 395, 441, 623, 704
MlyI GAGTC 1 cut(s) 383
MmeI TCCRAC 1 cut(s) 241
MseI TTAA 3 cut(s) 83, 399, 534
MspR9I CCNGG 3 cut(s) 177, 576, 789
MunI CAATTG 1 cut(s) 300
Mva1269I GAATGC 1 cut(s) 492
MvaI CCWGG 3 cut(s) 177, 576, 789
MvnI CGCG 1 cut(s) 324
MwoI GCNNNNNNNGC 6 cut(s) 311, 325, 376, 412, 470, 801
NdeII GATC 1 cut(s) 30
NlaIII CATG 2 cut(s) 419, 527
NlaIV GGNNCC 3 cut(s) 337, 507, 585
NmuCI GTSAC 1 cut(s) 58
PaeR7I CTCGAG 1 cut(s) 756
PctI GAATGC 1 cut(s) 492
PfeI GAWTC 2 cut(s) 213, 243
Pfl23II CGTACG 1 cut(s) 775
PkrI GCNGC 5 cut(s) 321, 381, 550, 725, 803
PleI GAGTC 1 cut(s) 383
PpsI GAGTC 1 cut(s) 383
PpuMI RGGWCCY 1 cut(s) 583
Psp124BI GAGCTC 1 cut(s) 408
Psp5II RGGWCCY 1 cut(s) 583
Psp6I CCWGG 3 cut(s) 175, 574, 787
PspGI CCWGG 3 cut(s) 175, 574, 787
PspLI CGTACG 1 cut(s) 775
PspN4I GGNNCC 3 cut(s) 337, 507, 585
PspPI GGNCC 1 cut(s) 583
PspPPI RGGWCCY 1 cut(s) 583
PstNI CAGNNNCTG 1 cut(s) 176
RsaI GTAC 4 cut(s) 110, 224, 522, 777
RsaNI GTAC 4 cut(s) 109, 223, 521, 776
SacI GAGCTC 1 cut(s) 408
SaqAI TTAA 3 cut(s) 83, 399, 534
SatI GCNGC 5 cut(s) 320, 380, 549, 724, 802
Sau3AI GATC 1 cut(s) 30
Sau96I GGNCC 1 cut(s) 583
SchI GAGTC 1 cut(s) 383
ScrFI CCNGG 3 cut(s) 177, 576, 789
SduI GDGCHC 1 cut(s) 408
SexAI ACCWGGT 2 cut(s) 175, 574
SfaNI GCATC 1 cut(s) 176
Sfr274I CTCGAG 1 cut(s) 756
SinI GGWCC 1 cut(s) 583
SlaI CTCGAG 1 cut(s) 756
SmlI CTYRAG 1 cut(s) 756
SmoI CTYRAG 1 cut(s) 756
Sse9I AATT 5 cut(s) 300, 395, 441, 623, 704
SsiI CCGC 5 cut(s) 155, 210, 233, 462, 709
SspI AATATT 1 cut(s) 764
SspMI CTAG 1 cut(s) 450
SstI GAGCTC 1 cut(s) 408
StyD4I CCNGG 3 cut(s) 175, 574, 787
StyI CCWWGG 2 cut(s) 339, 449
TaaI ACNGT 1 cut(s) 222
TaqI TCGA 2 cut(s) 75, 757
TasI AATT 5 cut(s) 300, 395, 441, 623, 704
TatI WGTACW 1 cut(s) 520
TfiI GAWTC 2 cut(s) 213, 243
Tru1I TTAA 3 cut(s) 83, 399, 534
Tru9I TTAA 3 cut(s) 83, 399, 534
TscAI CASTG 2 cut(s) 415, 696
TseFI GTSAC 1 cut(s) 58
TseI GCWGC 5 cut(s) 319, 379, 548, 723, 801
Tsp45I GTSAC 1 cut(s) 58
TspDTI ATGAA 3 cut(s) 131, 177, 540
TspGWI ACGGA 2 cut(s) 77, 660
TspRI CASTG 2 cut(s) 415, 696
VpaK11BI GGWCC 1 cut(s) 583
XapI RAATTY 3 cut(s) 395, 441, 623
XhoI CTCGAG 1 cut(s) 756
XmaJI CCTAGG 1 cut(s) 449
XspI CTAG 1 cut(s) 450
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.