pycom08g15500

Protein of unknown function (DUF4057)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr8
OG0011778
Physical Location & Seq
Forward (+)
15254137 .. 15256016
1880 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom08g15500.5

Sequence Viewer

Length: 915 bp
ATGGAGAGGAGCACTCCGGTGAGGAAACCCCATACATCCACCGCGGATCTGCTCACCTGGTCCGAGACTCCCCCTGCTGATTCTCCTCTTCCCTCCTCCGCCTCTCGGCCTCACCAGCCGTCGGATGGGATCAGAAAGGTGGTGTTTGGAGGGCAGGTGACGGACGAAGAGGTCGAGAGCTTGAACAAACGCAAACCTTGTTCAGCGCATAAGATGAAGGAGATCACCGGGAGCGGCATTTTTGCACCGAAAGCAGAAAACGATGCCGCGGAAGCCGATGGTGCGAACCCTACCCCAAAGCCCGGAATTCGTATGTACCAGCAAGCGGTTGCTGGAATCAGTCATATCTCGTTTGGTGATGAAGAGGGTGTTTCTCCTAAAAAGCCTACCACCATTCCCGAAGTTGCAAAGCAGCGCGAGCTAAGCGGGACCTTGGAAACTGAAGCAGAGAGAGAGGCAAGGCTGAAGAAGCAGCTCTCTGAGTCTAAATTCAAGGAGCTTAGTGGGCATGACATATTTGCGCCCCCTCCTGAAATTTTACCCAGGACTACTACTGCCCCGCGTGCATTGGCCTTGAAAGGAAGCATCGAGATAGGAGAACCTACTTCACCCAACGGTCGCACATCTGTTAAGGTTTCTAATCCTGGTGGGGGTCAGAGCAATATAACATCCATTGAGGAACCAGTGCCCAAGACGGCCAAGAAGATATATGACAAGAAATTTTCGGAGCTCTCAGGAAATGATATATTCAAGGGTAATGTTCCTCCGTCGTCAGCTGAAAAGCCACTGAGTTCGGCAAAACTACGAGAGATGAGTGGCAGCAACATCTTTGCGGATGGGAAAAAGGAGGCTCGAGACTACTTAGGAGGCGTACGCAAACCCCCAGGTGGAGAGAGCAGCATTGCCTTGGTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4057

Protein Analysis

305

Amino Acids

32.42

Weight (kDa)

8.75

Isoelectric Point (pI)

52.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0011778)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78150 AT1G78150 AT1G78150
fragaria_vesca FvH4_5g37630
malus_domestica MD08G1181800.v1.1 MD15G1367100.v1.1
prunus_persica Prupe.1G515000_v2.0.a1
pyrus_communis pycom08g15500 pycom15g32910
rosa_chinensis RchiOBHm_Chr7g0239311
rosa_laevigata RLG00000000764
rosa_multiflora Rmu_sc0007840.1_g000003
rosa_roxburghii Rroxscaffold_3G00221030
rosa_rugosa Rorug07G0327200
rosa_samantha Rh7AG480600 Rh7BG453300 Rh7CG498500 Rh7DG466600
rosa_wichuraiana Rw7G040260

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 145
AasI GACNNNNNNGTC 1 cut(s) 170
Acc36I ACCTGC 1 cut(s) 145
AccBSI CCGCTC 1 cut(s) 234
AccII CGCG 4 cut(s) 44, 269, 417, 562
AclWI GGATC 2 cut(s) 54, 137
AcoI YGGCCR 1 cut(s) 696
AcsI RAATTY 4 cut(s) 306, 488, 534, 719
AcuI CTGAAG 2 cut(s) 462, 485
AfaI GTAC 2 cut(s) 317, 873
AfiI CCNNNNNNNGG 7 cut(s) 105, 121, 125, 302, 325, 650, 887
AgsI TTSAA 4 cut(s) 184, 493, 577, 751
AjnI CCWGG 4 cut(s) 56, 542, 643, 883
AleI CACNNNNGTG 1 cut(s) 17
AluBI AGCT 6 cut(s) 180, 421, 475, 499, 730, 776
AluI AGCT 6 cut(s) 180, 421, 475, 499, 730, 776
Alw21I GWGCWC 2 cut(s) 14, 732
Alw26I GTCTC 2 cut(s) 59, 849
AlwI GGATC 2 cut(s) 54, 137
Ama87I CYCGRG 1 cut(s) 852
AoxI GGCC 3 cut(s) 107, 570, 696
ApeKI GCWGC 4 cut(s) 412, 472, 819, 897
ApoI RAATTY 4 cut(s) 306, 488, 534, 719
AspLEI GCGC 3 cut(s) 208, 417, 523
AspS9I GGNCC 2 cut(s) 60, 429
AsuC2I CCSGG 2 cut(s) 229, 303
AsuHPI GGTGA 7 cut(s) 31, 46, 104, 169, 217, 368, 600
AvaI CYCGRG 1 cut(s) 852
AvaII GGWCC 2 cut(s) 60, 429
BaeGI GKGCMC 1 cut(s) 690
BanII GRGCYC 1 cut(s) 732
Bbv12I GWGCWC 2 cut(s) 14, 732
BbvI GCAGC 4 cut(s) 424, 484, 831, 909
BccI CCATC 3 cut(s) 119, 272, 830
BceAI ACGGC 2 cut(s) 103, 711
BciT130I CCWGG 4 cut(s) 58, 544, 645, 885
BcnI CCSGG 2 cut(s) 229, 303
BcoDI GTCTC 2 cut(s) 59, 849
BfuAI ACCTGC 1 cut(s) 145
BisI GCNGC 6 cut(s) 235, 267, 413, 473, 820, 898
BlpI GCTNAGC 1 cut(s) 422
BlsI GCNGC 6 cut(s) 236, 268, 414, 474, 821, 899
Bme1390I CCNGG 6 cut(s) 58, 229, 303, 544, 645, 885
Bme18I GGWCC 2 cut(s) 60, 429
BmeT110I CYCGRG 1 cut(s) 852
BmgT120I GGNCC 2 cut(s) 60, 429
BmiI GGNNCC 2 cut(s) 430, 681
BmrFI CCNGG 6 cut(s) 58, 229, 303, 544, 645, 885
BmsI GCATC 2 cut(s) 253, 594
BplI GAGNNNNNCTC 1 cut(s) 30
Bpu1102I GCTNAGC 1 cut(s) 422
BpuMI CCSGG 2 cut(s) 229, 303
BsaJI CCNNGG 6 cut(s) 42, 267, 432, 542, 883, 906
BsaWI WCCGGW 1 cut(s) 16
BsaXI ACNNNNNCTCC 2 cut(s) 141, 171
Bsc4I CCNNNNNNNGG 7 cut(s) 105, 121, 125, 302, 325, 650, 887
Bse1I ACTGG 1 cut(s) 683
Bse3DI GCAATG 1 cut(s) 900
BseBI CCWGG 4 cut(s) 58, 544, 645, 885
BseDI CCNNGG 6 cut(s) 42, 267, 432, 542, 883, 906
BseGI GGATG 4 cut(s) 35, 130, 668, 841
BseLI CCNNNNNNNGG 7 cut(s) 105, 121, 125, 302, 325, 650, 887
BseMI GCAATG 1 cut(s) 900
BseMII CTCAG 3 cut(s) 471, 747, 779
BseNI ACTGG 1 cut(s) 683
BseRI GAGGAG 3 cut(s) 22, 75, 85
BseSI GKGCMC 1 cut(s) 690
BseXI GCAGC 4 cut(s) 424, 484, 831, 909
Bsh1236I CGCG 4 cut(s) 44, 269, 417, 562
Bsh1285I CGRYCG 1 cut(s) 619
BshFI GGCC 3 cut(s) 109, 572, 698
BsiEI CGRYCG 1 cut(s) 619
BsiHKAI GWGCWC 2 cut(s) 14, 732
BsiHKCI CYCGRG 1 cut(s) 852
BsiSI CCGG 3 cut(s) 17, 228, 303
BsiWI CGTACG 1 cut(s) 871
BslFI GGGAC 1 cut(s) 442
BslI CCNNNNNNNGG 7 cut(s) 105, 121, 125, 302, 325, 650, 887
BsmAI GTCTC 2 cut(s) 59, 849
BsmFI GGGAC 1 cut(s) 442
BsnI GGCC 3 cut(s) 109, 572, 698
BsoBI CYCGRG 1 cut(s) 852
Bsp1286I GDGCHC 3 cut(s) 14, 690, 732
Bsp143I GATC 3 cut(s) 46, 129, 222
Bsp1720I GCTNAGC 1 cut(s) 422
BspANI GGCC 3 cut(s) 109, 572, 698
BspCNI CTCAG 3 cut(s) 472, 746, 780
BspFNI CGCG 4 cut(s) 44, 269, 417, 562
BspLI GGNNCC 2 cut(s) 430, 681
BspMI ACCTGC 1 cut(s) 145
BspPI GGATC 2 cut(s) 54, 137
BsrBI CCGCTC 1 cut(s) 234
BsrDI GCAATG 1 cut(s) 900
BsrI ACTGG 1 cut(s) 683
BssECI CCNNGG 6 cut(s) 42, 267, 432, 542, 883, 906
BssMI GATC 3 cut(s) 46, 129, 222
BssT1I CCWWGG 2 cut(s) 432, 906
Bst2UI CCWGG 4 cut(s) 58, 544, 645, 885
Bst4CI ACNGT 1 cut(s) 617
Bst6I CTCTTC 3 cut(s) 93, 162, 357
BstC8I GCNNGC 3 cut(s) 324, 419, 564
BstDEI CTNAG 6 cut(s) 422, 480, 500, 733, 788, 862
BstDSI CCRYGG 2 cut(s) 42, 267
BstF5I GGATG 4 cut(s) 35, 130, 668, 841
BstFNI CGCG 4 cut(s) 44, 269, 417, 562
BstHHI GCGC 3 cut(s) 208, 417, 523
BstKTI GATC 3 cut(s) 49, 132, 225
BstMAI GTCTC 2 cut(s) 59, 849
BstMBI GATC 3 cut(s) 46, 129, 222
BstMCI CGRYCG 1 cut(s) 619
BstMWI GCNNNNNNNGC 9 cut(s) 115, 251, 272, 281, 418, 423, 469, 505, 563
BstNI CCWGG 4 cut(s) 58, 544, 645, 885
BstSCI CCNGG 6 cut(s) 56, 227, 301, 542, 643, 883
BstSLI GKGCMC 1 cut(s) 690
BstUI CGCG 4 cut(s) 44, 269, 417, 562
BstV1I GCAGC 4 cut(s) 424, 484, 831, 909
BstX2I RGATCY 1 cut(s) 46
BstYI RGATCY 1 cut(s) 46
BsuRI GGCC 3 cut(s) 109, 572, 698
BtgI CCRYGG 2 cut(s) 42, 267
BtsCI GGATG 4 cut(s) 35, 130, 668, 841
BtsIMutI CAGTG 2 cut(s) 690, 785
BveI ACCTGC 1 cut(s) 145
Cac8I GCNNGC 3 cut(s) 324, 419, 564
CfoI GCGC 3 cut(s) 208, 417, 523
Cfr13I GGNCC 2 cut(s) 60, 429
Cfr42I CCGCGG 2 cut(s) 45, 270
CsiI ACCWGGT 1 cut(s) 56
Csp6I GTAC 2 cut(s) 316, 872
CviAII CATG 1 cut(s) 509
CviQI GTAC 2 cut(s) 316, 872
DdeI CTNAG 6 cut(s) 422, 480, 500, 733, 788, 862
DpnI GATC 3 cut(s) 48, 131, 224
DpnII GATC 3 cut(s) 46, 129, 222
DrdI GACNNNNNNGTC 1 cut(s) 170
DseDI GACNNNNNNGTC 1 cut(s) 170
EaeI YGGCCR 1 cut(s) 696
Eam1104I CTCTTC 3 cut(s) 93, 162, 357
EarI CTCTTC 3 cut(s) 93, 162, 357
EciI GGCGGA 1 cut(s) 88
Ecl136II GAGCTC 1 cut(s) 730
Eco130I CCWWGG 2 cut(s) 432, 906
Eco24I GRGCYC 1 cut(s) 732
Eco47I GGWCC 2 cut(s) 60, 429
Eco53kI GAGCTC 1 cut(s) 730
Eco57I CTGAAG 2 cut(s) 462, 485
Eco88I CYCGRG 1 cut(s) 852
EcoICRI GAGCTC 1 cut(s) 730
EcoO109I RGGNCCY 1 cut(s) 429
EcoRI GAATTC 1 cut(s) 306
EcoRII CCWGG 4 cut(s) 56, 542, 643, 883
EcoT14I CCWWGG 2 cut(s) 432, 906
EcoT38I GRGCYC 1 cut(s) 732
ErhI CCWWGG 2 cut(s) 432, 906
FaeI CATG 1 cut(s) 512
FaqI GGGAC 1 cut(s) 442
FatI CATG 1 cut(s) 508
FauI CCCGC 2 cut(s) 419, 567
Fnu4HI GCNGC 6 cut(s) 235, 267, 413, 473, 820, 898
FokI GGATG 4 cut(s) 22, 137, 655, 848
FriOI GRGCYC 1 cut(s) 732
Fsp4HI GCNGC 6 cut(s) 235, 267, 413, 473, 820, 898
GlaI GCGC 3 cut(s) 207, 416, 522
GluI GCNGC 6 cut(s) 235, 267, 413, 473, 820, 898
HaeIII GGCC 3 cut(s) 109, 572, 698
HapII CCGG 3 cut(s) 17, 228, 303
HhaI GCGC 3 cut(s) 208, 417, 523
Hin1II CATG 1 cut(s) 512
Hin6I GCGC 3 cut(s) 206, 415, 521
HinP1I GCGC 3 cut(s) 206, 415, 521
HinfI GANTC 4 cut(s) 67, 80, 336, 482
HpaII CCGG 3 cut(s) 17, 228, 303
HphI GGTGA 7 cut(s) 31, 46, 104, 169, 217, 368, 600
Hpy188I TCNGA 6 cut(s) 64, 124, 134, 481, 657, 727
Hpy188III TCNNGA 6 cut(s) 175, 398, 530, 589, 735, 854
Hpy99I CGWCG 2 cut(s) 124, 772
HpyAV CCTTC 1 cut(s) 211
HpyCH4III ACNGT 1 cut(s) 617
HpyCH4V TGCA 3 cut(s) 245, 407, 566
HpyF10VI GCNNNNNNNGC 9 cut(s) 115, 251, 272, 281, 418, 423, 469, 505, 563
HpyF3I CTNAG 6 cut(s) 422, 480, 500, 733, 788, 862
Hsp92II CATG 1 cut(s) 512
HspAI GCGC 3 cut(s) 206, 415, 521
KspI CCGCGG 2 cut(s) 45, 270
Kzo9I GATC 3 cut(s) 46, 129, 222
LmnI GCTCC 4 cut(s) 9, 231, 496, 727
Lsp1109I GCAGC 4 cut(s) 424, 484, 831, 909
LweI GCATC 2 cut(s) 253, 594
MabI ACCWGGT 1 cut(s) 56
MaeIII GTNAC 1 cut(s) 157
MalI GATC 3 cut(s) 48, 131, 224
MbiI CCGCTC 1 cut(s) 234
MboI GATC 3 cut(s) 46, 129, 222
MboII GAAGA 5 cut(s) 80, 179, 374, 478, 715
MflI RGATCY 1 cut(s) 46
MhlI GDGCHC 3 cut(s) 14, 690, 732
MluCI AATT 4 cut(s) 306, 488, 534, 719
MlyI GAGTC 2 cut(s) 61, 491
MmeI TCCRAC 1 cut(s) 102
MseI TTAA 2 cut(s) 630, 913
MslI CAYNNNNRTG 1 cut(s) 17
MspA1I CMGCKG 3 cut(s) 44, 269, 776
MspI CCGG 3 cut(s) 17, 228, 303
MspR9I CCNGG 6 cut(s) 58, 229, 303, 544, 645, 885
MvaI CCWGG 4 cut(s) 58, 544, 645, 885
MvnI CGCG 4 cut(s) 44, 269, 417, 562
MwoI GCNNNNNNNGC 9 cut(s) 115, 251, 272, 281, 418, 423, 469, 505, 563
NciI CCSGG 2 cut(s) 229, 303
NdeII GATC 3 cut(s) 46, 129, 222
NlaIII CATG 1 cut(s) 512
NlaIV GGNNCC 2 cut(s) 430, 681
NmeAIII GCCGAG 1 cut(s) 85
NmuCI GTSAC 1 cut(s) 157
OliI CACNNNNGTG 1 cut(s) 17
PaeR7I CTCGAG 1 cut(s) 852
PaqCI CACCTGC 1 cut(s) 145
PcsI WCGNNNNNNNCGW 1 cut(s) 171
PfeI GAWTC 2 cut(s) 80, 336
Pfl23II CGTACG 1 cut(s) 871
PkrI GCNGC 6 cut(s) 236, 268, 414, 474, 821, 899
PleI GAGTC 2 cut(s) 61, 490
PpsI GAGTC 2 cut(s) 61, 490
PpuMI RGGWCCY 1 cut(s) 429
Psp124BI GAGCTC 1 cut(s) 732
Psp5II RGGWCCY 1 cut(s) 429
Psp6I CCWGG 4 cut(s) 56, 542, 643, 883
PspGI CCWGG 4 cut(s) 56, 542, 643, 883
PspLI CGTACG 1 cut(s) 871
PspN4I GGNNCC 2 cut(s) 430, 681
PspPI GGNCC 2 cut(s) 60, 429
PspPPI RGGWCCY 1 cut(s) 429
PsuI RGATCY 1 cut(s) 46
PvuII CAGCTG 1 cut(s) 776
RsaI GTAC 2 cut(s) 317, 873
RsaNI GTAC 2 cut(s) 316, 872
RseI CAYNNNNRTG 1 cut(s) 17
SacI GAGCTC 1 cut(s) 732
SacII CCGCGG 2 cut(s) 45, 270
SaqAI TTAA 2 cut(s) 630, 913
SatI GCNGC 6 cut(s) 235, 267, 413, 473, 820, 898
Sau3AI GATC 3 cut(s) 46, 129, 222
Sau96I GGNCC 2 cut(s) 60, 429
SchI GAGTC 2 cut(s) 61, 491
ScrFI CCNGG 6 cut(s) 58, 229, 303, 544, 645, 885
SduI GDGCHC 3 cut(s) 14, 690, 732
SexAI ACCWGGT 1 cut(s) 56
SfaNI GCATC 2 cut(s) 253, 594
Sfr274I CTCGAG 1 cut(s) 852
Sfr303I CCGCGG 2 cut(s) 45, 270
SgrBI CCGCGG 2 cut(s) 45, 270
SinI GGWCC 2 cut(s) 60, 429
SlaI CTCGAG 1 cut(s) 852
SmiMI CAYNNNNRTG 1 cut(s) 17
SmlI CTYRAG 1 cut(s) 852
SmoI CTYRAG 1 cut(s) 852
Sse9I AATT 4 cut(s) 306, 488, 534, 719
SstI GAGCTC 1 cut(s) 732
StyD4I CCNGG 6 cut(s) 56, 227, 301, 542, 643, 883
StyI CCWWGG 2 cut(s) 432, 906
TaaI ACNGT 1 cut(s) 617
TaqI TCGA 3 cut(s) 174, 588, 853
TasI AATT 4 cut(s) 306, 488, 534, 719
TauI GCSGC 2 cut(s) 237, 269
TfiI GAWTC 2 cut(s) 80, 336
Tru1I TTAA 2 cut(s) 630, 913
Tru9I TTAA 2 cut(s) 630, 913
TscAI CASTG 2 cut(s) 690, 792
TseFI GTSAC 1 cut(s) 157
TseI GCWGC 4 cut(s) 412, 472, 819, 897
Tsp45I GTSAC 1 cut(s) 157
TspDTI ATGAA 2 cut(s) 230, 375
TspGWI ACGGA 2 cut(s) 176, 756
TspRI CASTG 2 cut(s) 690, 792
VpaK11BI GGWCC 2 cut(s) 60, 429
XapI RAATTY 4 cut(s) 306, 488, 534, 719
XcmI CCANNNNNNNNNTGG 1 cut(s) 122
XhoI CTCGAG 1 cut(s) 852
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.