AT1G78180

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Forward (+)
29416837 .. 29418561
1725 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G78180.1

Sequence Viewer

Length: 1257 bp
ATGTCAGGACTCGATATCTATCCTCACGATCCTTCTTCTTCTTCTTCGACCAGCTCTATCGATCTATCCAATGAAGCTTTCTTCAGCACCGGTGGTCTGTTTCTCGAACCACCAGGCGTTTCCTCTTCCTTCTTCGACTCTATCTCCTCCAAATGCTCCGACTCAGAGCCACTGCATTTCCCCGGTTACTGGAGAAACAAAACCCGTCTCCGCTCCGGTAAGAACTTTATGTTCCTGTCCGTGAGCTTGAGTAAAGACAGATCTGAGCAGCAATGTAAGAAGGCTTTGGCGCAAAACGACGAAATTCCCGGCAAGGATAATCGAAAACGAAGTGTTATCGGTGGCGTGAGGAGACGCGGGACCATGAACACAAGGAAGCATCTCTGGGCTGGTGCTGTAGCTGCCATGGTTTCAAAAACATTCTTAGCTCCACTTGAGAGACTAAAGCTTGAATATACAGTTCGTGGTGAACAGAGGAACTTGTTGGTGGTTGCTAAGTCAATTGCAACTACACAGGGCTTGACTGGATTCTGGAAAGGTAATTTGCTCAATGTTCTTCGAACTGCTCCTTTCAAAGCCGTCAATTTTTGTGCCTATGATACCTATAGAAAGCAATTGCTTAAAATCGCTGGGAATCAAGAAGCAACCAACTTTGAAAGATTCGTTGCTGGTGCCGCTGCTGGGATTACTGCTACTGTGCTCTGCTTGCCACTCGACACTATACGAACCAAACTAGTGGCTCGGGGTGGAGAAGCCTTGGGGGGAATCGGAGGAGCTTTTCGGTATATGATCCAAACAGAAGGGTTGTTCTCCCTCTACAAGGGTCTAGTGCCGTCCATAGCAAGCATGGCTCTGTCCGGTGCAGTTTTCTATGGCGTTTACGACATCCTTAAGTCATCGTTTCTGCATACACCAGAAGGCCGGAAAAGACTGATAGACATGAAGCAGCAGGGACAAGAACTCAATGCTCTAGACAGGCTCGAGTTAGGACCCATCAGAACTCTCATGTACGGTGCTATAGCAGGTGCTTGTACTGAAGTAGCCACTTATCCTTTCGAAGTAGTGAGACGACAGCTTCAGATGCAGATGGGTAAAAACAAGCTCAATGCTTTAGCTATGGGATTCAATATCATTGAAAGAGGAGGGATCCCAGCTTTATACGCTGGACTTTTACCTAGCTTGCTCCAGGTATTGCCTTCGGCTTCAATAAGTTACTTTGTCTACGAGTGTATGAAGATAGTACTTAAAGTAGAATAA

Protein Analysis

418

Amino Acids

45.82

Weight (kDa)

9.65

Isoelectric Point (pI)

44.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 123 - 208 3.2e-18 Mitochondrial carrier protein
Mito_carr PF00153 215 - 302 5.2e-18 Mitochondrial carrier protein
Mito_carr PF00153 330 - 415 4.6e-18 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012801)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1013
Acc36I ACCTGC 1 cut(s) 1013
AccB1I GGYRCC 1 cut(s) 671
AccBSI CCGCTC 1 cut(s) 213
AccI GTMKAC 1 cut(s) 1221
AccII CGCG 1 cut(s) 357
AciI CCGC 3 cut(s) 211, 357, 675
AclWI GGATC 4 cut(s) 23, 784, 1141, 1154
AcsI RAATTY 1 cut(s) 303
AcuI CTGAAG 3 cut(s) 67, 1056, 1061
AfaI GTAC 3 cut(s) 1010, 1033, 1242
AfiI CCNNNNNNNGG 3 cut(s) 189, 681, 820
AflII CTTAAG 1 cut(s) 890
AgeI ACCGGT 1 cut(s) 89
AgsI TTSAA 7 cut(s) 414, 452, 574, 656, 1126, 1136, 1206
AhlI ACTAGT 1 cut(s) 733
AjnI CCWGG 2 cut(s) 112, 1185
AjuI GAANNNNNNNTTGG 2 cut(s) 62, 94
Alw21I GWGCWC 1 cut(s) 702
Alw26I GTCTC 4 cut(s) 212, 346, 433, 1060
AlwI GGATC 4 cut(s) 23, 784, 1141, 1154
Ama87I CYCGRG 2 cut(s) 741, 980
AoxI GGCC 1 cut(s) 919
ApeKI GCWGC 4 cut(s) 268, 401, 677, 946
ApoI RAATTY 1 cut(s) 303
AsiGI ACCGGT 1 cut(s) 89
AspLEI GCGC 1 cut(s) 292
AspS9I GGNCC 2 cut(s) 360, 989
AsuC2I CCSGG 2 cut(s) 183, 309
AsuHPI GGTGA 1 cut(s) 479
AsuII TTCGAA 2 cut(s) 559, 1056
AvaI CYCGRG 2 cut(s) 741, 980
AvaII GGWCC 2 cut(s) 360, 989
BamHI GGATCC 1 cut(s) 1146
BanI GGYRCC 1 cut(s) 671
Bbv12I GWGCWC 1 cut(s) 702
BbvI GCAGC 4 cut(s) 280, 388, 664, 958
BccI CCATC 2 cut(s) 1001, 1081
BceAI ACGGC 2 cut(s) 563, 817
BciT130I CCWGG 2 cut(s) 114, 1187
BcnI CCSGG 2 cut(s) 183, 309
BcoDI GTCTC 4 cut(s) 212, 346, 433, 1060
BcuI ACTAGT 1 cut(s) 733
BfaI CTAG 4 cut(s) 734, 827, 971, 1176
BfmI CTRYAG 3 cut(s) 396, 604, 1017
BfrI CTTAAG 1 cut(s) 890
BfuAI ACCTGC 1 cut(s) 1013
BglII AGATCT 1 cut(s) 260
BisI GCNGC 5 cut(s) 269, 402, 675, 678, 947
BlsI GCNGC 5 cut(s) 270, 403, 676, 679, 948
BmcAI AGTACT 1 cut(s) 1242
Bme1390I CCNGG 4 cut(s) 114, 183, 309, 1187
Bme18I GGWCC 2 cut(s) 360, 989
BmeT110I CYCGRG 2 cut(s) 741, 980
BmgT120I GGNCC 2 cut(s) 360, 989
BmiI GGNNCC 4 cut(s) 361, 673, 991, 1148
BmrFI CCNGG 4 cut(s) 114, 183, 309, 1187
BmsI GCATC 2 cut(s) 388, 1071
BpmI CTGGAG 2 cut(s) 211, 1169
Bpu14I TTCGAA 2 cut(s) 559, 1056
BpuEI CTTGAG 2 cut(s) 268, 455
BpuMI CCSGG 2 cut(s) 183, 309
Bsa29I ATCGAT 1 cut(s) 60
BsaBI GATNNNNATC 1 cut(s) 18
BsaJI CCNNGG 3 cut(s) 181, 405, 756
BsaWI WCCGGW 3 cut(s) 89, 215, 857
BsaXI ACNNNNNCTCC 2 cut(s) 128, 158
Bsc4I CCNNNNNNNGG 3 cut(s) 189, 681, 820
Bse118I RCCGGY 1 cut(s) 89
Bse1I ACTGG 2 cut(s) 194, 529
Bse3DI GCAATG 1 cut(s) 278
Bse8I GATNNNNATC 1 cut(s) 18
BseBI CCWGG 2 cut(s) 114, 1187
BseCI ATCGAT 1 cut(s) 60
BseDI CCNNGG 3 cut(s) 181, 405, 756
BseGI GGATG 1 cut(s) 885
BseJI GATNNNNATC 1 cut(s) 18
BseLI CCNNNNNNNGG 3 cut(s) 189, 681, 820
BseMI GCAATG 1 cut(s) 278
BseMII CTCAG 2 cut(s) 177, 255
BseNI ACTGG 2 cut(s) 194, 529
BseRI GAGGAG 4 cut(s) 136, 364, 786, 1155
BseXI GCAGC 4 cut(s) 280, 388, 664, 958
BseYI CCCAGC 3 cut(s) 629, 680, 1150
BsgI GTGCAG 1 cut(s) 882
Bsh1236I CGCG 1 cut(s) 357
BshFI GGCC 1 cut(s) 921
BshNI GGYRCC 1 cut(s) 671
BshTI ACCGGT 1 cut(s) 89
BshVI ATCGAT 1 cut(s) 60
BsiHKAI GWGCWC 1 cut(s) 702
BsiHKCI CYCGRG 2 cut(s) 741, 980
BsiSI CCGG 6 cut(s) 90, 183, 216, 309, 858, 922
BslFI GGGAC 2 cut(s) 373, 966
BslI CCNNNNNNNGG 3 cut(s) 189, 681, 820
BsmAI GTCTC 4 cut(s) 212, 346, 433, 1060
BsmBI CGTCTC 3 cut(s) 212, 346, 1060
BsmFI GGGAC 2 cut(s) 373, 966
BsnI GGCC 1 cut(s) 921
BsoBI CYCGRG 2 cut(s) 741, 980
Bsp119I TTCGAA 2 cut(s) 559, 1056
Bsp1286I GDGCHC 1 cut(s) 702
Bsp143I GATC 5 cut(s) 28, 61, 260, 789, 1146
Bsp19I CCATGG 1 cut(s) 405
BspACI CCGC 3 cut(s) 211, 357, 675
BspANI GGCC 1 cut(s) 921
BspCNI CTCAG 2 cut(s) 176, 256
BspDI ATCGAT 1 cut(s) 60
BspFNI CGCG 1 cut(s) 357
BspLI GGNNCC 4 cut(s) 361, 673, 991, 1148
BspMI ACCTGC 1 cut(s) 1013
BspPI GGATC 4 cut(s) 23, 784, 1141, 1154
BspT104I TTCGAA 2 cut(s) 559, 1056
BspT107I GGYRCC 1 cut(s) 671
BspTI CTTAAG 1 cut(s) 890
BsrBI CCGCTC 1 cut(s) 213
BsrDI GCAATG 1 cut(s) 278
BsrFI RCCGGY 1 cut(s) 89
BsrI ACTGG 2 cut(s) 194, 529
BssAI RCCGGY 1 cut(s) 89
BssECI CCNNGG 3 cut(s) 181, 405, 756
BssMI GATC 5 cut(s) 28, 61, 260, 789, 1146
BssT1I CCWWGG 2 cut(s) 405, 756
Bst2UI CCWGG 2 cut(s) 114, 1187
Bst4CI ACNGT 3 cut(s) 460, 697, 1013
Bst6I CTCTTC 1 cut(s) 130
BstAFI CTTAAG 1 cut(s) 890
BstBI TTCGAA 2 cut(s) 559, 1056
BstC8I GCNNGC 3 cut(s) 707, 844, 1181
BstDEI CTNAG 4 cut(s) 163, 264, 424, 495
BstDSI CCRYGG 1 cut(s) 405
BstENI CCTNNNNNAGG 1 cut(s) 818
BstF5I GGATG 1 cut(s) 885
BstFNI CGCG 1 cut(s) 357
BstHHI GCGC 1 cut(s) 292
BstKTI GATC 5 cut(s) 31, 64, 263, 792, 1149
BstMAI GTCTC 4 cut(s) 212, 346, 433, 1060
BstMBI GATC 5 cut(s) 28, 61, 260, 789, 1146
BstMWI GCNNNNNNNGC 6 cut(s) 401, 674, 706, 848, 1081, 1160
BstNI CCWGG 2 cut(s) 114, 1187
BstSCI CCNGG 4 cut(s) 112, 181, 307, 1185
BstSFI CTRYAG 3 cut(s) 396, 604, 1017
BstUI CGCG 1 cut(s) 357
BstV1I GCAGC 4 cut(s) 280, 388, 664, 958
BstX2I RGATCY 2 cut(s) 260, 1146
BstXI CCANNNNNNTGG 1 cut(s) 736
BstYI RGATCY 2 cut(s) 260, 1146
Bsu15I ATCGAT 1 cut(s) 60
BsuRI GGCC 1 cut(s) 921
BsuTUI ATCGAT 1 cut(s) 60
BtgI CCRYGG 1 cut(s) 405
BtsCI GGATG 1 cut(s) 885
BtsI GCAGTG 1 cut(s) 170
BtsIMutI CAGTG 1 cut(s) 170
BveI ACCTGC 1 cut(s) 1013
Cac8I GCNNGC 3 cut(s) 707, 844, 1181
CfoI GCGC 1 cut(s) 292
Cfr10I RCCGGY 1 cut(s) 89
Cfr13I GGNCC 2 cut(s) 360, 989
ClaI ATCGAT 1 cut(s) 60
CseI GACGC 1 cut(s) 363
Csp6I GTAC 3 cut(s) 1009, 1032, 1241
CspAI ACCGGT 1 cut(s) 89
CviAII CATG 5 cut(s) 364, 406, 847, 940, 1006
CviQI GTAC 3 cut(s) 1009, 1032, 1241
DdeI CTNAG 4 cut(s) 163, 264, 424, 495
DpnI GATC 5 cut(s) 30, 63, 262, 791, 1148
DpnII GATC 5 cut(s) 28, 61, 260, 789, 1146
Eam1104I CTCTTC 1 cut(s) 130
EarI CTCTTC 1 cut(s) 130
Eco130I CCWWGG 2 cut(s) 405, 756
Eco32I GATATC 1 cut(s) 16
Eco47I GGWCC 2 cut(s) 360, 989
Eco57I CTGAAG 3 cut(s) 67, 1056, 1061
Eco88I CYCGRG 2 cut(s) 741, 980
EcoNI CCTNNNNNAGG 1 cut(s) 818
EcoO109I RGGNCCY 1 cut(s) 989
EcoRII CCWGG 2 cut(s) 112, 1185
EcoRV GATATC 1 cut(s) 16
EcoT14I CCWWGG 2 cut(s) 405, 756
ErhI CCWWGG 2 cut(s) 405, 756
Esp3I CGTCTC 3 cut(s) 212, 346, 1060
FaeI CATG 5 cut(s) 367, 409, 850, 943, 1009
FaqI GGGAC 2 cut(s) 373, 966
FatI CATG 5 cut(s) 363, 405, 846, 939, 1005
FauI CCCGC 1 cut(s) 350
FblI GTMKAC 1 cut(s) 1221
Fnu4HI GCNGC 5 cut(s) 269, 402, 675, 678, 947
FokI GGATG 1 cut(s) 872
Fsp4HI GCNGC 5 cut(s) 269, 402, 675, 678, 947
FspBI CTAG 4 cut(s) 734, 827, 971, 1176
GlaI GCGC 1 cut(s) 291
GluI GCNGC 5 cut(s) 269, 402, 675, 678, 947
GsaI CCCAGC 3 cut(s) 633, 684, 1154
GsuI CTGGAG 2 cut(s) 211, 1169
HaeIII GGCC 1 cut(s) 921
HapII CCGG 6 cut(s) 90, 183, 216, 309, 858, 922
HgaI GACGC 1 cut(s) 363
HhaI GCGC 1 cut(s) 292
Hin1II CATG 5 cut(s) 367, 409, 850, 943, 1009
Hin6I GCGC 1 cut(s) 290
HinP1I GCGC 1 cut(s) 290
HindIII AAGCTT 2 cut(s) 75, 446
HinfI GANTC 8 cut(s) 9, 137, 161, 528, 634, 660, 765, 1122
HpaII CCGG 6 cut(s) 90, 183, 216, 309, 858, 922
HphI GGTGA 1 cut(s) 479
Hpy166II GTNNAC 3 cut(s) 470, 880, 1222
Hpy188I TCNGA 6 cut(s) 160, 166, 265, 770, 998, 1080
Hpy188III TCNNGA 6 cut(s) 6, 26, 104, 532, 638, 971
Hpy8I GTNNAC 3 cut(s) 470, 880, 1222
Hpy99I CGWCG 1 cut(s) 302
HpyAV CCTTC 6 cut(s) 42, 139, 274, 794, 911, 1206
HpyCH4III ACNGT 3 cut(s) 460, 697, 1013
HpyCH4V TGCA 5 cut(s) 175, 506, 863, 907, 1084
HpyF10VI GCNNNNNNNGC 6 cut(s) 401, 674, 706, 848, 1081, 1160
HpyF3I CTNAG 4 cut(s) 163, 264, 424, 495
Hsp92II CATG 5 cut(s) 367, 409, 850, 943, 1009
HspAI GCGC 1 cut(s) 290
Kzo9I GATC 5 cut(s) 28, 61, 260, 789, 1146
LmnI GCTCC 6 cut(s) 161, 218, 433, 571, 773, 1188
Lsp1109I GCAGC 4 cut(s) 280, 388, 664, 958
LweI GCATC 2 cut(s) 388, 1071
MaeI CTAG 4 cut(s) 734, 827, 971, 1176
MaeIII GTNAC 2 cut(s) 185, 1211
MalI GATC 5 cut(s) 30, 63, 262, 791, 1148
MbiI CCGCTC 1 cut(s) 213
MboI GATC 5 cut(s) 28, 61, 260, 789, 1146
MboII GAAGA 9 cut(s) 27, 30, 33, 36, 73, 117, 124, 548, 1246
MfeI CAATTG 2 cut(s) 501, 614
MflI RGATCY 2 cut(s) 260, 1146
MhlI GDGCHC 1 cut(s) 702
MluCI AATT 5 cut(s) 303, 501, 541, 583, 614
MlyI GAGTC 3 cut(s) 3, 131, 155
MmeI TCCRAC 1 cut(s) 183
MnlI CCTC 9 cut(s) 33, 133, 157, 342, 468, 764, 824, 1133, 1136
MseI TTAA 3 cut(s) 621, 891, 1245
MspA1I CMGCKG 1 cut(s) 677
MspCI CTTAAG 1 cut(s) 890
MspI CCGG 6 cut(s) 90, 183, 216, 309, 858, 922
MspR9I CCNGG 4 cut(s) 114, 183, 309, 1187
MunI CAATTG 2 cut(s) 501, 614
MvaI CCWGG 2 cut(s) 114, 1187
MvnI CGCG 1 cut(s) 357
MwoI GCNNNNNNNGC 6 cut(s) 401, 674, 706, 848, 1081, 1160
NciI CCSGG 2 cut(s) 183, 309
NcoI CCATGG 1 cut(s) 405
NdeII GATC 5 cut(s) 28, 61, 260, 789, 1146
NlaIII CATG 5 cut(s) 367, 409, 850, 943, 1009
NlaIV GGNNCC 4 cut(s) 361, 673, 991, 1148
NspV TTCGAA 2 cut(s) 559, 1056
PaeR7I CTCGAG 1 cut(s) 980
PaqCI CACCTGC 1 cut(s) 1013
PfeI GAWTC 5 cut(s) 528, 634, 660, 765, 1122
PinAI ACCGGT 1 cut(s) 89
PkrI GCNGC 5 cut(s) 270, 403, 676, 679, 948
PleI GAGTC 3 cut(s) 3, 131, 155
PpsI GAGTC 3 cut(s) 3, 131, 155
PpuMI RGGWCCY 1 cut(s) 989
Psp5II RGGWCCY 1 cut(s) 989
Psp6I CCWGG 2 cut(s) 112, 1185
PspFI CCCAGC 3 cut(s) 629, 680, 1150
PspGI CCWGG 2 cut(s) 112, 1185
PspN4I GGNNCC 4 cut(s) 361, 673, 991, 1148
PspPI GGNCC 2 cut(s) 360, 989
PspPPI RGGWCCY 1 cut(s) 989
PspXI VCTCGAGB 1 cut(s) 980
PsuI RGATCY 2 cut(s) 260, 1146
RsaI GTAC 3 cut(s) 1010, 1033, 1242
RsaNI GTAC 3 cut(s) 1009, 1032, 1241
SaqAI TTAA 3 cut(s) 621, 891, 1245
SatI GCNGC 5 cut(s) 269, 402, 675, 678, 947
Sau3AI GATC 5 cut(s) 28, 61, 260, 789, 1146
Sau96I GGNCC 2 cut(s) 360, 989
ScaI AGTACT 1 cut(s) 1242
SchI GAGTC 3 cut(s) 3, 131, 155
ScrFI CCNGG 4 cut(s) 114, 183, 309, 1187
SduI GDGCHC 1 cut(s) 702
SfaNI GCATC 2 cut(s) 388, 1071
SfcI CTRYAG 3 cut(s) 396, 604, 1017
Sfr274I CTCGAG 1 cut(s) 980
SfuI TTCGAA 2 cut(s) 559, 1056
SgrAI CRCCGGYG 1 cut(s) 89
SinI GGWCC 2 cut(s) 360, 989
SlaI CTCGAG 1 cut(s) 980
SmlI CTYRAG 4 cut(s) 247, 434, 890, 980
SmoI CTYRAG 4 cut(s) 247, 434, 890, 980
SpeI ACTAGT 1 cut(s) 733
Sse9I AATT 5 cut(s) 303, 501, 541, 583, 614
SsiI CCGC 3 cut(s) 211, 357, 675
SspMI CTAG 4 cut(s) 734, 827, 971, 1176
StyD4I CCNGG 4 cut(s) 112, 181, 307, 1185
StyI CCWWGG 2 cut(s) 405, 756
TaaI ACNGT 3 cut(s) 460, 697, 1013
TasI AATT 5 cut(s) 303, 501, 541, 583, 614
TatI WGTACW 2 cut(s) 1031, 1240
TauI GCSGC 1 cut(s) 677
TfiI GAWTC 5 cut(s) 528, 634, 660, 765, 1122
Tru1I TTAA 3 cut(s) 621, 891, 1245
Tru9I TTAA 3 cut(s) 621, 891, 1245
TscAI CASTG 1 cut(s) 177
TseI GCWGC 4 cut(s) 268, 401, 677, 946
TspDTI ATGAA 4 cut(s) 87, 380, 956, 1247
TspGWI ACGGA 1 cut(s) 229
TspRI CASTG 1 cut(s) 177
Vha464I CTTAAG 1 cut(s) 890
VpaK11BI GGWCC 2 cut(s) 360, 989
XagI CCTNNNNNAGG 1 cut(s) 818
XapI RAATTY 1 cut(s) 303
XbaI TCTAGA 1 cut(s) 970
XcmI CCANNNNNNNNNTGG 1 cut(s) 844
XhoI CTCGAG 1 cut(s) 980
XmiI GTMKAC 1 cut(s) 1221
XspI CTAG 4 cut(s) 734, 827, 971, 1176
ZrmI AGTACT 1 cut(s) 1242
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.