Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0012801

Physical Location & Seq

Genomic Coordinates Reverse (-)

53066106 .. 53070669

Gene Structure 4564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG451900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1197 bp

ATGCCCCCCTCGGAGCTCTCTTGCTCTGCAAACCCCAACCTCCACGACTCAAACTCCGGCCTATTCGTCACCGGCGGTTTGTTCCTGGAGCCCACAGTCCCCAATTCGCTGCTTAATTCCGTCTCGTTCAGAAAGACCTCAAACGCAGTCGTTTCCGGGTCGGGTTATGCGTGCCGGTTGCGACTGGCGGGTGGCGGTGGCGGTGGGTTTTTGTCGGTGAGTTTGAGAAGCGATGGGGTTGTTCGGGAGTCGAAAGGGGGGTGTTTGGTGCAGAACGGCGAGGAGGGCTCGGAGGAAACAGCGGTGGTGGTGGTTCAAGAAGAGAAGAGAGAGAAAGTTGGGATTAGGAGAGGAAGGGCCATGAACACCACCAAGCATTTGTGGGCTGGTGCCATAGCCGCCATGGTTTCCAGAACGTTTGTTGCGCCGCTTGAGAGACTAAAGCTGGAGTATATAGTTCGTGGTGAACGGAGGCATCTTTTCGAGCTTGTTAAGAGCATAGCGGTTTCTCAGGGCGTGAGGGGGTTTTGGAAGGGGAACTTGGTCAATATTCTTCGCACAGCTCCATTTAAAGCAATCAATTTTTATGCATATGATACTTACAGAAAACAATTGCTTAGATTTTCTGGAAATAAGGAAACTACAAATTTTGAGAGATTCGTTGCTGGTGCTGCAGCTGGAATTACTGCTACCATACTCTGCTTACCTCTTGACACGATTCGAACTAAGCTAGTGGCTCCGGGTGGGGAATCCTTGGGCGGTGTCATTGGTGCTTTCCGCCACATGATCCAGACTGAAGGGTTCTTTTCCCTTTATAAGGGCCTAGTACCATCCATAGCAAGCATGGCACCTTCAGGTGCAGTTTTCTATGGTGTCTATGACATATTAAAATCAGCTTACTTGCATTCACCGAATGGAAGGAAAAGAATTCAGAAAATGAACCAGCACGGCAAGCGCCTGAATGCTTTTGATAAACTGGAGTTGGGACCAGTTAGGACATTACTGTATGGAGCTATTGCTGGTGCCTGTGCAGAAGCTGCCACTTATCCATTTGAAGTTGTGAGGAGACAGCTTCAATTGCAATCCCAGGCTACTAAAATGAGCACCTTGGCGACTTGTATTAAGATAGTTGAACGAGGAGGGGTCCCGGCACTCTATGCAGGACTTGTTCCCAGCTTGTTACAGGTATGTTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

398

Amino Acids

42.93

Weight (kDa)

9.78

Isoelectric Point (pI)

50.49

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	121 - 206	1.3e-19	Mitochondrial carrier protein
Mito_carr	PF00153	214 - 301	8.1e-20	Mitochondrial carrier protein
Mito_carr	PF00153	328 - 396	2.1e-14	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78180
fragaria_vesca	FvH4_5g37340 FvH4_5g37340
malus_domestica	MD08G1182700.v1.1 MD15G1368800.v1.1
prunus_persica	Prupe.1G516900_v2.0.a1
pyrus_communis	pycom08g15650 pycom15g33050
rosa_chinensis	RchiOBHm_Chr7g0238991
rosa_laevigata	RLG00000000792
rosa_multiflora	Rmu_sc0004132.1_g000003
rosa_roxburghii	Rroxscaffold_3G00221400
rosa_rugosa	Rorug07G0324300
rosa_samantha	Rh7AG479300 Rh7BG451900 Rh7CG496500 Rh7DG464000
rosa_wichuraiana	Rw7G040010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	816
AccB1I	GGYRCC	3 cut(s)	389, 847, 1022
AclI	AACGTT	1 cut(s)	416
AclWI	GGATC	1 cut(s)	781
AcsI	RAATTY	2 cut(s)	646, 927
AcuI	CTGAAG	2 cut(s)	816, 837
AfaI	GTAC	1 cut(s)	828
AfiI	CCNNNNNNNGG	1 cut(s)	817
AgsI	TTSAA	4 cut(s)	317, 1055, 1076, 1133
AjnI	CCWGG	2 cut(s)	84, 1086
AjuI	GAANNNNNNNTTGG	2 cut(s)	524, 556
Alw21I	GWGCWC	2 cut(s)	18, 1106
Alw26I	GTCTC	3 cut(s)	127, 430, 1060
AlwI	GGATC	1 cut(s)	781
AlwNI	CAGNNNCTG	1 cut(s)	1037
AoxI	GGCC	3 cut(s)	58, 357, 820
ApeKI	GCWGC	4 cut(s)	109, 671, 674, 1037
ApoI	RAATTY	2 cut(s)	646, 927
AspLEI	GCGC	2 cut(s)	427, 957
AspS9I	GGNCC	4 cut(s)	357, 820, 986, 1144
AsuC2I	CCSGG	3 cut(s)	157, 741, 1148
AsuHPI	GGTGA	4 cut(s)	61, 229, 476, 900
AsuII	TTCGAA	1 cut(s)	721
AvaII	GGWCC	2 cut(s)	986, 1144
BanI	GGYRCC	3 cut(s)	389, 847, 1022
BanII	GRGCYC	3 cut(s)	18, 93, 290
Bbv12I	GWGCWC	2 cut(s)	18, 1106
BbvI	GCAGC	4 cut(s)	96, 658, 686, 1024
BccI	CCATC	2 cut(s)	227, 838
BceAI	ACGGC	2 cut(s)	292, 964
BciT130I	CCWGG	2 cut(s)	86, 1088
BcnI	CCSGG	3 cut(s)	157, 741, 1148
BcoDI	GTCTC	3 cut(s)	127, 430, 1060
BfaI	CTAG	2 cut(s)	731, 824
BfmI	CTRYAG	1 cut(s)	672
BfoI	RGCGCY	1 cut(s)	958
BisI	GCNGC	6 cut(s)	110, 399, 428, 672, 675, 1038
BlsI	GCNGC	6 cut(s)	111, 400, 429, 673, 676, 1039
Bme1390I	CCNGG	5 cut(s)	86, 157, 741, 1088, 1148
Bme18I	GGWCC	2 cut(s)	986, 1144
BmgT120I	GGNCC	4 cut(s)	357, 820, 986, 1144
BmiI	GGNNCC	8 cut(s)	90, 391, 738, 849, 987, 1024, 1145, 1146
BmrFI	CCNGG	5 cut(s)	86, 157, 741, 1088, 1148
BmsI	GCATC	1 cut(s)	484
BplI	GAGNNNNNCTC	2 cut(s)	272, 304
BpmI	CTGGAG	3 cut(s)	107, 467, 998
Bpu14I	TTCGAA	1 cut(s)	721
BpuEI	CTTGAG	1 cut(s)	452
BpuMI	CCSGG	3 cut(s)	157, 741, 1148
BsaJI	CCNNGG	5 cut(s)	9, 402, 753, 1086, 1107
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	1 cut(s)	817
Bse118I	RCCGGY	2 cut(s)	71, 174
Bse1I	ACTGG	3 cut(s)	189, 981, 989
BseBI	CCWGG	2 cut(s)	86, 1088
BseDI	CCNNGG	5 cut(s)	9, 402, 753, 1086, 1107
BseGI	GGATG	1 cut(s)	830
BseLI	CCNNNNNNNGG	1 cut(s)	817
BseMII	CTCAG	1 cut(s)	524
BseNI	ACTGG	3 cut(s)	189, 981, 989
BseRI	GAGGAG	3 cut(s)	296, 1078, 1152
BseXI	GCAGC	4 cut(s)	96, 658, 686, 1024
BseYI	CCCAGC	1 cut(s)	1172
BsgI	GTGCAG	3 cut(s)	290, 879, 1050
BshFI	GGCC	3 cut(s)	60, 359, 822
BshNI	GGYRCC	3 cut(s)	389, 847, 1022
BsiHKAI	GWGCWC	2 cut(s)	18, 1106
BsiSI	CCGG	6 cut(s)	57, 72, 156, 175, 740, 1148
BslFI	GGGAC	3 cut(s)	83, 999, 1130
BslI	CCNNNNNNNGG	1 cut(s)	817
BsmAI	GTCTC	3 cut(s)	127, 430, 1060
BsmBI	CGTCTC	1 cut(s)	127
BsmFI	GGGAC	3 cut(s)	83, 999, 1130
BsmI	GAATGC	2 cut(s)	904, 967
BsnI	GGCC	3 cut(s)	60, 359, 822
Bsp119I	TTCGAA	1 cut(s)	721
Bsp1286I	GDGCHC	4 cut(s)	18, 93, 290, 1106
Bsp143I	GATC	1 cut(s)	786
Bsp19I	CCATGG	1 cut(s)	402
BspANI	GGCC	3 cut(s)	60, 359, 822
BspCNI	CTCAG	1 cut(s)	523
BspLI	GGNNCC	8 cut(s)	90, 391, 738, 849, 987, 1024, 1145, 1146
BspMAI	CTGCAG	1 cut(s)	676
BspPI	GGATC	1 cut(s)	781
BspT104I	TTCGAA	1 cut(s)	721
BspT107I	GGYRCC	3 cut(s)	389, 847, 1022
BsrFI	RCCGGY	2 cut(s)	71, 174
BsrI	ACTGG	3 cut(s)	189, 981, 989
BssAI	RCCGGY	2 cut(s)	71, 174
BssECI	CCNNGG	5 cut(s)	9, 402, 753, 1086, 1107
BssMI	GATC	1 cut(s)	786
BssT1I	CCWWGG	3 cut(s)	402, 753, 1107
Bst2UI	CCWGG	2 cut(s)	86, 1088
Bst4CI	ACNGT	2 cut(s)	97, 1005
Bst6I	CTCTTC	2 cut(s)	315, 320
BstAPI	GCANNNNNTGC	2 cut(s)	1037, 1157
BstBI	TTCGAA	1 cut(s)	721
BstC8I	GCNNGC	3 cut(s)	172, 841, 953
BstDEI	CTNAG	3 cut(s)	510, 617, 726
BstDSI	CCRYGG	1 cut(s)	402
BstENI	CCTNNNNNAGG	1 cut(s)	815
BstF5I	GGATG	1 cut(s)	830
BstH2I	RGCGCY	1 cut(s)	958
BstHHI	GCGC	2 cut(s)	427, 957
BstKTI	GATC	1 cut(s)	789
BstMAI	GTCTC	3 cut(s)	127, 430, 1060
BstMBI	GATC	1 cut(s)	786
BstMWI	GCNNNNNNNGC	8 cut(s)	285, 398, 671, 845, 952, 1037, 1078, 1157
BstNI	CCWGG	2 cut(s)	86, 1088
BstSCI	CCNGG	5 cut(s)	84, 155, 739, 1086, 1146
BstSFI	CTRYAG	1 cut(s)	672
BstV1I	GCAGC	4 cut(s)	96, 658, 686, 1024
BsuRI	GGCC	3 cut(s)	60, 359, 822
BtgI	CCRYGG	1 cut(s)	402
BtgZI	GCGATG	1 cut(s)	246
BtsCI	GGATG	1 cut(s)	830
Cac8I	GCNNGC	3 cut(s)	172, 841, 953
CaiI	CAGNNNCTG	1 cut(s)	1037
CfoI	GCGC	2 cut(s)	427, 957
Cfr10I	RCCGGY	2 cut(s)	71, 174
Cfr13I	GGNCC	4 cut(s)	357, 820, 986, 1144
Csp6I	GTAC	1 cut(s)	827
CviAII	CATG	4 cut(s)	361, 403, 784, 844
CviQI	GTAC	1 cut(s)	827
DdeI	CTNAG	3 cut(s)	510, 617, 726
DpnI	GATC	1 cut(s)	788
DpnII	GATC	1 cut(s)	786
DraI	TTTAAA	1 cut(s)	571
Eam1104I	CTCTTC	2 cut(s)	315, 320
EarI	CTCTTC	2 cut(s)	315, 320
EciI	GGCGGA	1 cut(s)	767
Ecl136II	GAGCTC	1 cut(s)	16
Eco130I	CCWWGG	3 cut(s)	402, 753, 1107
Eco24I	GRGCYC	3 cut(s)	18, 93, 290
Eco47I	GGWCC	2 cut(s)	986, 1144
Eco53kI	GAGCTC	1 cut(s)	16
Eco57I	CTGAAG	2 cut(s)	816, 837
EcoICRI	GAGCTC	1 cut(s)	16
EcoNI	CCTNNNNNAGG	1 cut(s)	815
EcoO109I	RGGNCCY	2 cut(s)	820, 1144
EcoRI	GAATTC	1 cut(s)	927
EcoRII	CCWGG	2 cut(s)	84, 1086
EcoT14I	CCWWGG	3 cut(s)	402, 753, 1107
EcoT22I	ATGCAT	1 cut(s)	592
EcoT38I	GRGCYC	3 cut(s)	18, 93, 290
ErhI	CCWWGG	3 cut(s)	402, 753, 1107
Esp3I	CGTCTC	1 cut(s)	127
FaeI	CATG	4 cut(s)	364, 406, 787, 847
FalI	AAGNNNNNCTT	2 cut(s)	524, 556
FaqI	GGGAC	3 cut(s)	83, 999, 1130
FatI	CATG	4 cut(s)	360, 402, 783, 843
FauI	CCCGC	1 cut(s)	181
FauNDI	CATATG	1 cut(s)	592
Fnu4HI	GCNGC	6 cut(s)	110, 399, 428, 672, 675, 1038
FokI	GGATG	1 cut(s)	817
FriOI	GRGCYC	3 cut(s)	18, 93, 290
Fsp4HI	GCNGC	6 cut(s)	110, 399, 428, 672, 675, 1038
FspBI	CTAG	2 cut(s)	731, 824
GlaI	GCGC	2 cut(s)	426, 956
GluI	GCNGC	6 cut(s)	110, 399, 428, 672, 675, 1038
GsaI	CCCAGC	1 cut(s)	1176
GsuI	CTGGAG	3 cut(s)	107, 467, 998
HaeII	RGCGCY	1 cut(s)	958
HaeIII	GGCC	3 cut(s)	60, 359, 822
HapII	CCGG	6 cut(s)	57, 72, 156, 175, 740, 1148
HhaI	GCGC	2 cut(s)	427, 957
Hin1II	CATG	4 cut(s)	364, 406, 787, 847
Hin6I	GCGC	2 cut(s)	425, 955
HinP1I	GCGC	2 cut(s)	425, 955
HinfI	GANTC	5 cut(s)	47, 248, 657, 718, 749
HpaII	CCGG	6 cut(s)	57, 72, 156, 175, 740, 1148
HphI	GGTGA	4 cut(s)	61, 229, 476, 900
Hpy166II	GTNNAC	1 cut(s)	467
Hpy188I	TCNGA	4 cut(s)	13, 131, 292, 933
Hpy188III	TCNNGA	6 cut(s)	245, 317, 411, 627, 710, 790
Hpy8I	GTNNAC	1 cut(s)	467
HpyAV	CCTTC	5 cut(s)	348, 526, 791, 861, 912
HpyCH4III	ACNGT	2 cut(s)	97, 1005
HpyCH4IV	ACGT	1 cut(s)	416
HpyCH4V	TGCA	9 cut(s)	29, 271, 590, 674, 860, 904, 1031, 1081, 1160
HpyF10VI	GCNNNNNNNGC	8 cut(s)	285, 398, 671, 845, 952, 1037, 1078, 1157
HpyF3I	CTNAG	3 cut(s)	510, 617, 726
HpySE526I	ACGT	1 cut(s)	416
Hsp92II	CATG	4 cut(s)	364, 406, 787, 847
HspAI	GCGC	2 cut(s)	425, 955
KflI	GGGWCCC	1 cut(s)	1144
Kzo9I	GATC	1 cut(s)	786
LmnI	GCTCC	5 cut(s)	13, 88, 568, 742, 1010
Lsp1109I	GCAGC	4 cut(s)	96, 658, 686, 1024
LweI	GCATC	1 cut(s)	484
MaeI	CTAG	2 cut(s)	731, 824
MaeII	ACGT	1 cut(s)	416
MaeIII	GTNAC	2 cut(s)	67, 1179
MalI	GATC	1 cut(s)	788
MboI	GATC	1 cut(s)	786
MboII	GAAGA	3 cut(s)	332, 337, 545
MfeI	CAATTG	2 cut(s)	611, 1076
MhlI	GDGCHC	4 cut(s)	18, 93, 290, 1106
MluCI	AATT	8 cut(s)	103, 115, 580, 611, 646, 681, 927, 1076
MlyI	GAGTC	2 cut(s)	41, 257
Mph1103I	ATGCAT	1 cut(s)	592
MseI	TTAA	6 cut(s)	114, 492, 570, 887, 1122, 1195
MspA1I	CMGCKG	2 cut(s)	302, 677
MspI	CCGG	6 cut(s)	57, 72, 156, 175, 740, 1148
MspR9I	CCNGG	5 cut(s)	86, 157, 741, 1088, 1148
MunI	CAATTG	2 cut(s)	611, 1076
Mva1269I	GAATGC	2 cut(s)	904, 967
MvaI	CCWGG	2 cut(s)	86, 1088
MwoI	GCNNNNNNNGC	8 cut(s)	285, 398, 671, 845, 952, 1037, 1078, 1157
NciI	CCSGG	3 cut(s)	157, 741, 1148
NcoI	CCATGG	1 cut(s)	402
NdeI	CATATG	1 cut(s)	592
NdeII	GATC	1 cut(s)	786
NlaIII	CATG	4 cut(s)	364, 406, 787, 847
NlaIV	GGNNCC	8 cut(s)	90, 391, 738, 849, 987, 1024, 1145, 1146
NmuCI	GTSAC	1 cut(s)	67
NsiI	ATGCAT	1 cut(s)	592
NspV	TTCGAA	1 cut(s)	721
PcsI	WCGNNNNNNNCGW	1 cut(s)	167
PctI	GAATGC	2 cut(s)	904, 967
PfeI	GAWTC	3 cut(s)	657, 718, 749
PfoI	TCCNGGA	1 cut(s)	84
PkrI	GCNGC	6 cut(s)	111, 400, 429, 673, 676, 1039
PleI	GAGTC	2 cut(s)	41, 256
PpsI	GAGTC	2 cut(s)	41, 256
PpuMI	RGGWCCY	1 cut(s)	1144
PsiI	TTATAA	1 cut(s)	816
Psp124BI	GAGCTC	1 cut(s)	18
Psp1406I	AACGTT	1 cut(s)	416
Psp5II	RGGWCCY	1 cut(s)	1144
Psp6I	CCWGG	2 cut(s)	84, 1086
PspFI	CCCAGC	1 cut(s)	1172
PspGI	CCWGG	2 cut(s)	84, 1086
PspN4I	GGNNCC	8 cut(s)	90, 391, 738, 849, 987, 1024, 1145, 1146
PspPI	GGNCC	4 cut(s)	357, 820, 986, 1144
PspPPI	RGGWCCY	1 cut(s)	1144
PstI	CTGCAG	1 cut(s)	676
PstNI	CAGNNNCTG	1 cut(s)	1037
PvuII	CAGCTG	1 cut(s)	677
RsaI	GTAC	1 cut(s)	828
RsaNI	GTAC	1 cut(s)	827
SacI	GAGCTC	1 cut(s)	18
SaqAI	TTAA	6 cut(s)	114, 492, 570, 887, 1122, 1195
SatI	GCNGC	6 cut(s)	110, 399, 428, 672, 675, 1038
Sau3AI	GATC	1 cut(s)	786
Sau96I	GGNCC	4 cut(s)	357, 820, 986, 1144
SchI	GAGTC	2 cut(s)	41, 257
ScrFI	CCNGG	5 cut(s)	86, 157, 741, 1088, 1148
SduI	GDGCHC	4 cut(s)	18, 93, 290, 1106
SfaNI	GCATC	1 cut(s)	484
SfcI	CTRYAG	1 cut(s)	672
SfuI	TTCGAA	1 cut(s)	721
SgrAI	CRCCGGYG	1 cut(s)	71
SinI	GGWCC	2 cut(s)	986, 1144
SmlI	CTYRAG	1 cut(s)	431
SmoI	CTYRAG	1 cut(s)	431
Sse9I	AATT	8 cut(s)	103, 115, 580, 611, 646, 681, 927, 1076
SspI	AATATT	1 cut(s)	550
SspMI	CTAG	2 cut(s)	731, 824
SstI	GAGCTC	1 cut(s)	18
StyD4I	CCNGG	5 cut(s)	84, 155, 739, 1086, 1146
StyI	CCWWGG	3 cut(s)	402, 753, 1107
TaaI	ACNGT	2 cut(s)	97, 1005
TaiI	ACGT	1 cut(s)	419
TaqI	TCGA	3 cut(s)	251, 483, 721
TasI	AATT	8 cut(s)	103, 115, 580, 611, 646, 681, 927, 1076
TauI	GCSGC	2 cut(s)	401, 430
TfiI	GAWTC	3 cut(s)	657, 718, 749
Tru1I	TTAA	6 cut(s)	114, 492, 570, 887, 1122, 1195
Tru9I	TTAA	6 cut(s)	114, 492, 570, 887, 1122, 1195
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	4 cut(s)	109, 671, 674, 1037
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	2 cut(s)	377, 953
TspGWI	ACGGA	2 cut(s)	109, 484
VpaK11BI	GGWCC	2 cut(s)	986, 1144
XagI	CCTNNNNNAGG	1 cut(s)	815
XapI	RAATTY	2 cut(s)	646, 927
XcmI	CCANNNNNNNNNTGG	2 cut(s)	400, 841
XspI	CTAG	2 cut(s)	731, 824
Zsp2I	ATGCAT	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.