FvH4_5g37340

Belongs to the mitochondrial carrier (TC 2.A.29) family

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb5
Physical Location & Seq
Reverse (-)
27449271 .. 27454177
4907 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_5g37340.t2

Sequence Viewer

Length: 1236 bp
ATGCCACACTCCGAGCTCTCTTGCTCTGACCCCAACAACCCCGGCCTTTTCGTCACCGGCGGTTTGTTCCTGGAGCCCACAATCCCCAAATCGTTACTCAATTCCGTCTCGTTTAGAAAAACCTCAAACGCCGTCGTGTCCGGGTCGGGTTATGGGACCCGGTTGAGATTGGCGGGCGGCGGAAGTGCGTTTTTGTCGGTGAGTTTGAGAAGCGATGGGGTTGTTCGGGTGGCGAAAGAGGAGTGTTTGGTGCAGAACGGCGACGAGGAAGCGGCGGCGGCGGTGGTGGTGGTGGTTGGAGAGGTGAAGAGAGAGAGAGTTGGGGTTAGGAGAGGTAGGGCCATGAACACCACCAAGCATTTGTGGGCTGGTGCCATTGCCGCCATGGTTTCCAGAACGTTTGTCGCGCCGCTAGAGAGACTAAAGCTGGAGTATATAGTTCGGGGTGAACGGAGGCATCTATTTGAGCTTGTTAAGAGCATAGCGGTGTCTCAGGGCGTGAGGGGCTTTTGGAAGGGGAACCTAGTCAATATTCTTCGCACGGCTCCGTTTAAAGCAATCAATTTCTATGCATATGATACTTACAGAAAACAGTTGCTTAGATTTTGGGGGAATAAGGAGACTACTAATTTCGAGAGGTTTGTGGCTGGTGCTGCAGCTGGAATTACTGCTACCATAATGTGCTTACCTCTTGACACGATTCGAACTAAGCTAGTGGCTCCTGGTGGGGAATCCTTGGGTGGTGTCATTGGTGCTTTCCGCCACATGATCCAGACTGAAGGGTTCTTTTCCCTTTATAAGGGCCTAGTACCATCCATAGCAAGCATGGCACCTTCAGGTGCAGTTTTCTATGGTGTGTATGATATACTAAAGTCAGCTTACTTGCATTCACCGGATGGAAGGAAAAGAATTTTAAAAATGAGCCAGCATGGCGAGCACCTGAACGCTTTTGATCAACTGGAGTTGGGACCGGTTAGGACATTACTCTATGGAGCTATTGCTGGTGCCTGTGCAGAAGCTGCCACTTATCCATTTGAAGTTGTGAGGAGACAGCTTCAATTGCAATCCCAGGCTACTAAAATGAGTGCCTTGGCGACTTGTATTAAGATCGTTGAACGAGGAGGGGTCCCAGCACTCTATGCAGGACTTGTTCCCAGCTTGCTACAGGTACTTCCTTCGGCTTCAATAAGTTATTTTGTCTATGAGTTCATGAAAATTGTTCTCAAGGTAGAATGA

Protein Analysis

412

Amino Acids

44.66

Weight (kDa)

9.72

Isoelectric Point (pI)

43.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Mito_carr PF00153 115 - 200 1.7e-19 Mitochondrial carrier protein
Mito_carr PF00153 208 - 295 8.2e-20 Mitochondrial carrier protein
Mito_carr PF00153 322 - 408 8.7e-20 Mitochondrial carrier protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Orthologous Genes (Group: OG0012801)

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 798
AccB1I GGYRCC 3 cut(s) 371, 829, 1004
AccII CGCG 1 cut(s) 407
AclI AACGTT 1 cut(s) 398
AclWI GGATC 1 cut(s) 763
AcsI RAATTY 1 cut(s) 909
AcuI CTGAAG 2 cut(s) 798, 819
AfaI GTAC 2 cut(s) 810, 1170
AfiI CCNNNNNNNGG 1 cut(s) 799
AgeI ACCGGT 1 cut(s) 970
AgsI TTSAA 4 cut(s) 1037, 1058, 1115, 1185
AjnI CCWGG 3 cut(s) 69, 721, 1068
Alw21I GWGCWC 2 cut(s) 18, 939
Alw26I GTCTC 5 cut(s) 112, 412, 495, 614, 1042
AlwI GGATC 1 cut(s) 763
AlwNI CAGNNNCTG 1 cut(s) 1019
AoxI GGCC 3 cut(s) 43, 339, 802
ApeKI GCWGC 3 cut(s) 653, 656, 1019
ApoI RAATTY 1 cut(s) 909
AsiGI ACCGGT 1 cut(s) 970
AspLEI GCGC 1 cut(s) 409
AspS9I GGNCC 5 cut(s) 156, 339, 802, 968, 1126
AsuC2I CCSGG 3 cut(s) 42, 142, 160
AsuHPI GGTGA 5 cut(s) 46, 211, 316, 458, 882
AsuII TTCGAA 1 cut(s) 703
AvaII GGWCC 3 cut(s) 156, 968, 1126
BanI GGYRCC 3 cut(s) 371, 829, 1004
BanII GRGCYC 2 cut(s) 18, 78
Bbv12I GWGCWC 2 cut(s) 18, 939
BbvI GCAGC 3 cut(s) 640, 668, 1006
BccI CCATC 3 cut(s) 209, 820, 890
BceAI ACGGC 3 cut(s) 116, 274, 558
BciT130I CCWGG 3 cut(s) 71, 723, 1070
BclI TGATCA 1 cut(s) 952
BcnI CCSGG 3 cut(s) 42, 142, 160
BcoDI GTCTC 5 cut(s) 112, 412, 495, 614, 1042
BfaI CTAG 4 cut(s) 413, 524, 713, 806
BfmI CTRYAG 2 cut(s) 654, 1163
BglI GCCNNNNNGGC 1 cut(s) 930
BisI GCNGC 9 cut(s) 178, 273, 276, 279, 381, 410, 654, 657, 1020
BlsI GCNGC 9 cut(s) 179, 274, 277, 280, 382, 411, 655, 658, 1021
Bme1390I CCNGG 6 cut(s) 42, 71, 142, 160, 723, 1070
Bme18I GGWCC 3 cut(s) 156, 968, 1126
BmgT120I GGNCC 5 cut(s) 156, 339, 802, 968, 1126
BmrFI CCNGG 6 cut(s) 42, 71, 142, 160, 723, 1070
BmsI GCATC 1 cut(s) 466
BpmI CTGGAG 3 cut(s) 92, 449, 980
Bpu14I TTCGAA 1 cut(s) 703
BpuEI CTTGAG 1 cut(s) 1208
BpuMI CCSGG 3 cut(s) 42, 142, 160
BsaJI CCNNGG 5 cut(s) 40, 384, 735, 1068, 1089
BsaWI WCCGGW 2 cut(s) 892, 970
Bsc4I CCNNNNNNNGG 1 cut(s) 799
Bse118I RCCGGY 2 cut(s) 56, 970
Bse1I ACTGG 1 cut(s) 963
Bse3DI GCAATG 1 cut(s) 375
BseBI CCWGG 3 cut(s) 71, 723, 1070
BseDI CCNNGG 5 cut(s) 40, 384, 735, 1068, 1089
BseGI GGATG 2 cut(s) 812, 901
BseLI CCNNNNNNNGG 1 cut(s) 799
BseMI GCAATG 1 cut(s) 375
BseMII CTCAG 1 cut(s) 506
BseNI ACTGG 1 cut(s) 963
BseRI GAGGAG 3 cut(s) 254, 1060, 1134
BseXI GCAGC 3 cut(s) 640, 668, 1006
BseYI CCCAGC 2 cut(s) 1129, 1154
BsgI GTGCAG 3 cut(s) 272, 861, 1032
Bsh1236I CGCG 1 cut(s) 407
BshFI GGCC 3 cut(s) 45, 341, 804
BshNI GGYRCC 3 cut(s) 371, 829, 1004
BshTI ACCGGT 1 cut(s) 970
BsiHKAI GWGCWC 2 cut(s) 18, 939
BsiSI CCGG 6 cut(s) 42, 57, 141, 160, 893, 971
BslFI GGGAC 3 cut(s) 169, 981, 1112
BslI CCNNNNNNNGG 1 cut(s) 799
BsmAI GTCTC 5 cut(s) 112, 412, 495, 614, 1042
BsmBI CGTCTC 1 cut(s) 112
BsmFI GGGAC 3 cut(s) 169, 981, 1112
BsmI GAATGC 1 cut(s) 886
BsnI GGCC 3 cut(s) 45, 341, 804
Bsp119I TTCGAA 1 cut(s) 703
Bsp1286I GDGCHC 3 cut(s) 18, 78, 939
Bsp143I GATC 3 cut(s) 768, 952, 1107
Bsp19I CCATGG 1 cut(s) 384
BspANI GGCC 3 cut(s) 45, 341, 804
BspCNI CTCAG 1 cut(s) 505
BspFNI CGCG 1 cut(s) 407
BspHI TCATGA 1 cut(s) 1209
BspMAI CTGCAG 1 cut(s) 658
BspPI GGATC 1 cut(s) 763
BspT104I TTCGAA 1 cut(s) 703
BspT107I GGYRCC 3 cut(s) 371, 829, 1004
BsrDI GCAATG 1 cut(s) 375
BsrFI RCCGGY 2 cut(s) 56, 970
BsrI ACTGG 1 cut(s) 963
BssAI RCCGGY 2 cut(s) 56, 970
BssECI CCNNGG 5 cut(s) 40, 384, 735, 1068, 1089
BssMI GATC 3 cut(s) 768, 952, 1107
BssT1I CCWWGG 3 cut(s) 384, 735, 1089
Bst2UI CCWGG 3 cut(s) 71, 723, 1070
Bst4CI ACNGT 1 cut(s) 594
Bst6I CTCTTC 1 cut(s) 302
BstAPI GCANNNNNTGC 2 cut(s) 1019, 1139
BstBI TTCGAA 1 cut(s) 703
BstC8I GCNNGC 5 cut(s) 175, 823, 926, 935, 1160
BstDEI CTNAG 3 cut(s) 492, 599, 708
BstDSI CCRYGG 1 cut(s) 384
BstENI CCTNNNNNAGG 1 cut(s) 797
BstF5I GGATG 2 cut(s) 812, 901
BstFNI CGCG 1 cut(s) 407
BstHHI GCGC 1 cut(s) 409
BstKTI GATC 3 cut(s) 771, 955, 1110
BstMAI GTCTC 5 cut(s) 112, 412, 495, 614, 1042
BstMBI GATC 3 cut(s) 768, 952, 1107
BstNI CCWGG 3 cut(s) 71, 723, 1070
BstSCI CCNGG 6 cut(s) 40, 69, 140, 158, 721, 1068
BstSFI CTRYAG 2 cut(s) 654, 1163
BstUI CGCG 1 cut(s) 407
BstV1I GCAGC 3 cut(s) 640, 668, 1006
BsuRI GGCC 3 cut(s) 45, 341, 804
BtgI CCRYGG 1 cut(s) 384
BtgZI GCGATG 1 cut(s) 228
BtsCI GGATG 2 cut(s) 812, 901
Cac8I GCNNGC 5 cut(s) 175, 823, 926, 935, 1160
CaiI CAGNNNCTG 1 cut(s) 1019
CciI TCATGA 1 cut(s) 1209
CfoI GCGC 1 cut(s) 409
Cfr10I RCCGGY 2 cut(s) 56, 970
Cfr13I GGNCC 5 cut(s) 156, 339, 802, 968, 1126
Csp6I GTAC 2 cut(s) 809, 1169
CspAI ACCGGT 1 cut(s) 970
CviAII CATG 6 cut(s) 343, 385, 766, 826, 929, 1210
CviQI GTAC 2 cut(s) 809, 1169
DdeI CTNAG 3 cut(s) 492, 599, 708
DpnI GATC 3 cut(s) 770, 954, 1109
DpnII GATC 3 cut(s) 768, 952, 1107
DraI TTTAAA 2 cut(s) 553, 915
Eam1104I CTCTTC 1 cut(s) 302
EarI CTCTTC 1 cut(s) 302
EciI GGCGGA 2 cut(s) 195, 749
Ecl136II GAGCTC 1 cut(s) 16
Eco130I CCWWGG 3 cut(s) 384, 735, 1089
Eco24I GRGCYC 2 cut(s) 18, 78
Eco47I GGWCC 3 cut(s) 156, 968, 1126
Eco53kI GAGCTC 1 cut(s) 16
Eco57I CTGAAG 2 cut(s) 798, 819
EcoICRI GAGCTC 1 cut(s) 16
EcoNI CCTNNNNNAGG 1 cut(s) 797
EcoO109I RGGNCCY 3 cut(s) 156, 802, 1126
EcoRII CCWGG 3 cut(s) 69, 721, 1068
EcoT14I CCWWGG 3 cut(s) 384, 735, 1089
EcoT22I ATGCAT 1 cut(s) 574
EcoT38I GRGCYC 2 cut(s) 18, 78
ErhI CCWWGG 3 cut(s) 384, 735, 1089
Esp3I CGTCTC 1 cut(s) 112
FaeI CATG 6 cut(s) 346, 388, 769, 829, 932, 1213
FaqI GGGAC 3 cut(s) 169, 981, 1112
FatI CATG 6 cut(s) 342, 384, 765, 825, 928, 1209
FauI CCCGC 1 cut(s) 166
FauNDI CATATG 1 cut(s) 574
FbaI TGATCA 1 cut(s) 952
Fnu4HI GCNGC 9 cut(s) 178, 273, 276, 279, 381, 410, 654, 657, 1020
FokI GGATG 2 cut(s) 799, 908
FriOI GRGCYC 2 cut(s) 18, 78
Fsp4HI GCNGC 9 cut(s) 178, 273, 276, 279, 381, 410, 654, 657, 1020
FspBI CTAG 4 cut(s) 413, 524, 713, 806
GlaI GCGC 1 cut(s) 408
GluI GCNGC 9 cut(s) 178, 273, 276, 279, 381, 410, 654, 657, 1020
GsaI CCCAGC 2 cut(s) 1133, 1158
GsuI CTGGAG 3 cut(s) 92, 449, 980
HaeIII GGCC 3 cut(s) 45, 341, 804
HapII CCGG 6 cut(s) 42, 57, 141, 160, 893, 971
HhaI GCGC 1 cut(s) 409
Hin1II CATG 6 cut(s) 346, 388, 769, 829, 932, 1213
Hin6I GCGC 1 cut(s) 407
HinP1I GCGC 1 cut(s) 407
HinfI GANTC 2 cut(s) 700, 731
HpaII CCGG 6 cut(s) 42, 57, 141, 160, 893, 971
HphI GGTGA 5 cut(s) 46, 211, 316, 458, 882
Hpy166II GTNNAC 1 cut(s) 449
Hpy188I TCNGA 2 cut(s) 13, 28
Hpy188III TCNNGA 5 cut(s) 393, 634, 692, 772, 1210
Hpy8I GTNNAC 1 cut(s) 449
Hpy99I CGWCG 2 cut(s) 137, 266
HpyAV CCTTC 5 cut(s) 508, 773, 843, 894, 1185
HpyCH4III ACNGT 1 cut(s) 594
HpyCH4IV ACGT 1 cut(s) 398
HpyCH4V TGCA 8 cut(s) 253, 572, 656, 842, 886, 1013, 1063, 1142
HpyF3I CTNAG 3 cut(s) 492, 599, 708
HpySE526I ACGT 1 cut(s) 398
Hsp92II CATG 6 cut(s) 346, 388, 769, 829, 932, 1213
HspAI GCGC 1 cut(s) 407
KflI GGGWCCC 2 cut(s) 156, 1126
Ksp22I TGATCA 1 cut(s) 952
Kzo9I GATC 3 cut(s) 768, 952, 1107
LmnI GCTCC 4 cut(s) 73, 550, 724, 992
Lsp1109I GCAGC 3 cut(s) 640, 668, 1006
LweI GCATC 1 cut(s) 466
MaeI CTAG 4 cut(s) 413, 524, 713, 806
MaeII ACGT 1 cut(s) 398
MaeIII GTNAC 2 cut(s) 52, 93
MalI GATC 3 cut(s) 770, 954, 1109
MboI GATC 3 cut(s) 768, 952, 1107
MboII GAAGA 2 cut(s) 319, 527
MfeI CAATTG 1 cut(s) 1058
MhlI GDGCHC 3 cut(s) 18, 78, 939
MluCI AATT 7 cut(s) 100, 562, 628, 663, 909, 1058, 1215
MmeI TCCRAC 1 cut(s) 277
Mph1103I ATGCAT 1 cut(s) 574
MseI TTAA 4 cut(s) 474, 552, 914, 1104
MslI CAYNNNNRTG 1 cut(s) 485
MspA1I CMGCKG 1 cut(s) 659
MspI CCGG 6 cut(s) 42, 57, 141, 160, 893, 971
MspR9I CCNGG 6 cut(s) 42, 71, 142, 160, 723, 1070
MunI CAATTG 1 cut(s) 1058
Mva1269I GAATGC 1 cut(s) 886
MvaI CCWGG 3 cut(s) 71, 723, 1070
MvnI CGCG 1 cut(s) 407
NciI CCSGG 3 cut(s) 42, 142, 160
NcoI CCATGG 1 cut(s) 384
NdeI CATATG 1 cut(s) 574
NdeII GATC 3 cut(s) 768, 952, 1107
NlaIII CATG 6 cut(s) 346, 388, 769, 829, 932, 1213
NmuCI GTSAC 1 cut(s) 52
NsiI ATGCAT 1 cut(s) 574
NspV TTCGAA 1 cut(s) 703
PagI TCATGA 1 cut(s) 1209
PctI GAATGC 1 cut(s) 886
PfeI GAWTC 2 cut(s) 700, 731
PfoI TCCNGGA 1 cut(s) 69
PinAI ACCGGT 1 cut(s) 970
PkrI GCNGC 9 cut(s) 179, 274, 277, 280, 382, 411, 655, 658, 1021
PpuMI RGGWCCY 2 cut(s) 156, 1126
PsiI TTATAA 1 cut(s) 798
Psp124BI GAGCTC 1 cut(s) 18
Psp1406I AACGTT 1 cut(s) 398
Psp5II RGGWCCY 2 cut(s) 156, 1126
Psp6I CCWGG 3 cut(s) 69, 721, 1068
PspFI CCCAGC 2 cut(s) 1129, 1154
PspGI CCWGG 3 cut(s) 69, 721, 1068
PspPI GGNCC 5 cut(s) 156, 339, 802, 968, 1126
PspPPI RGGWCCY 2 cut(s) 156, 1126
PstI CTGCAG 1 cut(s) 658
PstNI CAGNNNCTG 1 cut(s) 1019
PvuII CAGCTG 1 cut(s) 659
RsaI GTAC 2 cut(s) 810, 1170
RsaNI GTAC 2 cut(s) 809, 1169
RseI CAYNNNNRTG 1 cut(s) 485
SacI GAGCTC 1 cut(s) 18
SaqAI TTAA 4 cut(s) 474, 552, 914, 1104
SatI GCNGC 9 cut(s) 178, 273, 276, 279, 381, 410, 654, 657, 1020
Sau3AI GATC 3 cut(s) 768, 952, 1107
Sau96I GGNCC 5 cut(s) 156, 339, 802, 968, 1126
ScrFI CCNGG 6 cut(s) 42, 71, 142, 160, 723, 1070
SduI GDGCHC 3 cut(s) 18, 78, 939
SfaNI GCATC 1 cut(s) 466
SfcI CTRYAG 2 cut(s) 654, 1163
SfuI TTCGAA 1 cut(s) 703
SgrAI CRCCGGYG 1 cut(s) 56
SinI GGWCC 3 cut(s) 156, 968, 1126
SmiMI CAYNNNNRTG 1 cut(s) 485
SmlI CTYRAG 1 cut(s) 1223
SmoI CTYRAG 1 cut(s) 1223
Sse9I AATT 7 cut(s) 100, 562, 628, 663, 909, 1058, 1215
SspI AATATT 1 cut(s) 532
SspMI CTAG 4 cut(s) 413, 524, 713, 806
SstI GAGCTC 1 cut(s) 18
StyD4I CCNGG 6 cut(s) 40, 69, 140, 158, 721, 1068
StyI CCWWGG 3 cut(s) 384, 735, 1089
TaaI ACNGT 1 cut(s) 594
TaiI ACGT 1 cut(s) 401
TaqI TCGA 2 cut(s) 633, 703
TasI AATT 7 cut(s) 100, 562, 628, 663, 909, 1058, 1215
TauI GCSGC 6 cut(s) 180, 275, 278, 281, 383, 412
TfiI GAWTC 2 cut(s) 700, 731
Tru1I TTAA 4 cut(s) 474, 552, 914, 1104
Tru9I TTAA 4 cut(s) 474, 552, 914, 1104
TseFI GTSAC 1 cut(s) 52
TseI GCWGC 3 cut(s) 653, 656, 1019
Tsp45I GTSAC 1 cut(s) 52
TspDTI ATGAA 3 cut(s) 359, 1198, 1226
TspGWI ACGGA 3 cut(s) 94, 466, 537
VpaK11BI GGWCC 3 cut(s) 156, 968, 1126
XagI CCTNNNNNAGG 1 cut(s) 797
XapI RAATTY 1 cut(s) 909
XcmI CCANNNNNNNNNTGG 2 cut(s) 382, 823
XspI CTAG 4 cut(s) 413, 524, 713, 806
Zsp2I ATGCAT 1 cut(s) 574
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.