Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr15

Orthogroup ID

OG0012801

Physical Location & Seq

Genomic Coordinates Forward (+)

44863525 .. 44866564

Gene Structure 3040 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD15G1368800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 870 bp

ATGTTGCTGACTGAAGCTTATTGTATCAGAACTTTTGTTGCACCTCTTGAGAGACTAAAGCTGGAGTATATAGTGCGCGGCGAACAGAGGCATCTATTTGAGCTCGTTAAGACAATTGCGGCTAATCAGGGGTTGAGGGGCTTTTGGAAGGGGAACCTAGTCAATATTCTTCGTACAGCTCCATTTAAAGCAATCAATTTCTATGCTTATGATACTTACAGAAAACAATTGCTCCGCTTCTCCGGAAATAAGGAGACCACAAATTTTGAGAGGTTCGTTGCTGGTGCTGCAGCTGGAATTACTGCTGCCACACTCTGCTTACCTCTTGACACGATTCGGACTCAGTTGGTGGCTCCTGGTGGGGAAGCCTTGGGTGGTGTGATTGGTGCTTTTCGCCACATGATCCAAACTGAAGGGTTCTTTTCGCTTTATAAGGGCTTAGTACCCTCCATTGCAAGCATGGCACCTGCAGGTGCAGTTTTCTATGGTGTCTATGATATATTAAAATCAACATACCTGCACTCCCATGATGGAAGGAAAAGAATTCACAAGATGAGCCAACAGGGGTGGGGTCGGAGTGCTTTGGACCAACTGGAGTTGGGACCGGTTCGGACTTTACTATATGGAGCTATTTCTGGTGCTTGTGCAGAAGCCGCCACATATCCATTTGAAGTGGTGAGGAGACAACTACAACTACAAGTCCAGGCAACTAAAATGAATGCCTTGGCAACTGGTATTAAAATAGTTGAACATGGAGGTGTCCCAGCTCTCTATGCAGGACTTATCCCCAGCTTGTTGCAGGTACTTCCTTCGGCCGCAATAAGTTACTTTGTCTATGAGTTTATGAAGATTGTTCTCAAGGTAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

290

Amino Acids

31.87

Weight (kDa)

9.57

Isoelectric Point (pI)

41.03

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	10 - 78	1.8e-14	Mitochondrial carrier protein
Mito_carr	PF00153	86 - 174	2e-20	Mitochondrial carrier protein
Mito_carr	PF00153	200 - 286	1.8e-19	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78180
fragaria_vesca	FvH4_5g37340 FvH4_5g37340
malus_domestica	MD08G1182700.v1.1 MD15G1368800.v1.1
prunus_persica	Prupe.1G516900_v2.0.a1
pyrus_communis	pycom08g15650 pycom15g33050
rosa_chinensis	RchiOBHm_Chr7g0238991
rosa_laevigata	RLG00000000792
rosa_multiflora	Rmu_sc0004132.1_g000003
rosa_roxburghii	Rroxscaffold_3G00221400
rosa_rugosa	Rorug07G0324300
rosa_samantha	Rh7AG479300 Rh7BG451900 Rh7CG496500 Rh7DG464000
rosa_wichuraiana	Rw7G040010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	432
AarI	CACCTGC	2 cut(s)	461, 475
Acc36I	ACCTGC	4 cut(s)	461, 475, 525, 790
AccB1I	GGYRCC	1 cut(s)	463
AccII	CGCG	1 cut(s)	78
AccIII	TCCGGA	1 cut(s)	242
AciI	CCGC	5 cut(s)	78, 119, 235, 654, 816
AclWI	GGATC	1 cut(s)	397
AcoI	YGGCCR	1 cut(s)	813
AcsI	RAATTY	2 cut(s)	262, 543
AcuI	CTGAAG	2 cut(s)	33, 432
AfaI	GTAC	3 cut(s)	175, 444, 804
AgeI	ACCGGT	1 cut(s)	604
AgsI	TTSAA	2 cut(s)	671, 749
AjnI	CCWGG	2 cut(s)	355, 702
AluBI	AGCT	8 cut(s)	17, 61, 103, 179, 293, 629, 767, 792
AluI	AGCT	8 cut(s)	17, 61, 103, 179, 293, 629, 767, 792
Alw21I	GWGCWC	1 cut(s)	105
Alw26I	GTCTC	3 cut(s)	46, 248, 676
AlwI	GGATC	1 cut(s)	397
Aor13HI	TCCGGA	1 cut(s)	242
AoxI	GGCC	1 cut(s)	813
ApeKI	GCWGC	3 cut(s)	287, 290, 305
ApoI	RAATTY	2 cut(s)	262, 543
AsiGI	ACCGGT	1 cut(s)	604
AspLEI	GCGC	1 cut(s)	78
AspS9I	GGNCC	2 cut(s)	586, 602
AsuHPI	GGTGA	1 cut(s)	688
AvaII	GGWCC	2 cut(s)	586, 602
BanI	GGYRCC	1 cut(s)	463
BanII	GRGCYC	1 cut(s)	105
Bbv12I	GWGCWC	1 cut(s)	105
BbvI	GCAGC	3 cut(s)	274, 292, 302
BccI	CCATC	1 cut(s)	524
BciT130I	CCWGG	2 cut(s)	357, 704
BcoDI	GTCTC	3 cut(s)	46, 248, 676
BfaI	CTAG	1 cut(s)	158
BfmI	CTRYAG	2 cut(s)	288, 468
BfuAI	ACCTGC	4 cut(s)	461, 475, 525, 790
BisI	GCNGC	7 cut(s)	79, 120, 288, 291, 306, 654, 816
BlsI	GCNGC	7 cut(s)	80, 121, 289, 292, 307, 655, 817
Bme1390I	CCNGG	2 cut(s)	357, 704
Bme18I	GGWCC	2 cut(s)	586, 602
BmgT120I	GGNCC	2 cut(s)	586, 602
BmiI	GGNNCC	4 cut(s)	155, 354, 465, 603
BmrFI	CCNGG	2 cut(s)	357, 704
BmsI	GCATC	1 cut(s)	100
BpmI	CTGGAG	2 cut(s)	83, 614
BpuEI	CTTGAG	2 cut(s)	68, 842
BsaI	GGTCTC	1 cut(s)	248
BsaJI	CCNNGG	2 cut(s)	369, 723
BsaWI	WCCGGW	2 cut(s)	242, 604
BsaXI	ACNNNNNCTCC	4 cut(s)	216, 246, 506, 536
Bse118I	RCCGGY	1 cut(s)	604
Bse1I	ACTGG	2 cut(s)	597, 736
Bse3DI	GCAATG	1 cut(s)	450
BseAI	TCCGGA	1 cut(s)	242
BseBI	CCWGG	2 cut(s)	357, 704
BseDI	CCNNGG	2 cut(s)	369, 723
BseMI	GCAATG	1 cut(s)	450
BseMII	CTCAG	1 cut(s)	356
BseNI	ACTGG	2 cut(s)	597, 736
BseRI	GAGGAG	1 cut(s)	694
BseX3I	CGGCCG	1 cut(s)	813
BseXI	GCAGC	3 cut(s)	274, 292, 302
BseYI	CCCAGC	2 cut(s)	763, 788
BsgI	GTGCAG	3 cut(s)	495, 503, 666
Bsh1236I	CGCG	1 cut(s)	78
Bsh1285I	CGRYCG	1 cut(s)	816
BshFI	GGCC	1 cut(s)	815
BshNI	GGYRCC	1 cut(s)	463
BshTI	ACCGGT	1 cut(s)	604
BsiEI	CGRYCG	1 cut(s)	816
BsiHKAI	GWGCWC	1 cut(s)	105
BsiSI	CCGG	2 cut(s)	243, 605
BslFI	GGGAC	2 cut(s)	615, 746
BsmAI	GTCTC	3 cut(s)	46, 248, 676
BsmFI	GGGAC	2 cut(s)	615, 746
BsmI	GAATGC	1 cut(s)	724
BsnI	GGCC	1 cut(s)	815
Bso31I	GGTCTC	1 cut(s)	248
Bsp1286I	GDGCHC	1 cut(s)	105
Bsp13I	TCCGGA	1 cut(s)	242
Bsp143I	GATC	1 cut(s)	402
BspACI	CCGC	5 cut(s)	78, 119, 235, 654, 816
BspANI	GGCC	1 cut(s)	815
BspCNI	CTCAG	1 cut(s)	355
BspEI	TCCGGA	1 cut(s)	242
BspFNI	CGCG	1 cut(s)	78
BspLI	GGNNCC	4 cut(s)	155, 354, 465, 603
BspMAI	CTGCAG	2 cut(s)	292, 472
BspMI	ACCTGC	4 cut(s)	461, 475, 525, 790
BspPI	GGATC	1 cut(s)	397
BspT107I	GGYRCC	1 cut(s)	463
BspTNI	GGTCTC	1 cut(s)	248
BsrDI	GCAATG	1 cut(s)	450
BsrFI	RCCGGY	1 cut(s)	604
BsrI	ACTGG	2 cut(s)	597, 736
BssAI	RCCGGY	1 cut(s)	604
BssECI	CCNNGG	2 cut(s)	369, 723
BssMI	GATC	1 cut(s)	402
BssT1I	CCWWGG	2 cut(s)	369, 723
Bst2UI	CCWGG	2 cut(s)	357, 704
BstC8I	GCNNGC	1 cut(s)	457
BstDEI	CTNAG	2 cut(s)	342, 439
BstFNI	CGCG	1 cut(s)	78
BstHHI	GCGC	1 cut(s)	78
BstKTI	GATC	1 cut(s)	405
BstMAI	GTCTC	3 cut(s)	46, 248, 676
BstMBI	GATC	1 cut(s)	402
BstMCI	CGRYCG	1 cut(s)	816
BstMWI	GCNNNNNNNGC	4 cut(s)	287, 461, 653, 773
BstNI	CCWGG	2 cut(s)	357, 704
BstSCI	CCNGG	2 cut(s)	355, 702
BstSFI	CTRYAG	2 cut(s)	288, 468
BstUI	CGCG	1 cut(s)	78
BstV1I	GCAGC	3 cut(s)	274, 292, 302
BstZI	CGGCCG	1 cut(s)	813
BsuRI	GGCC	1 cut(s)	815
BveI	ACCTGC	4 cut(s)	461, 475, 525, 790
Cac8I	GCNNGC	1 cut(s)	457
CfoI	GCGC	1 cut(s)	78
Cfr10I	RCCGGY	1 cut(s)	604
Cfr13I	GGNCC	2 cut(s)	586, 602
Csp6I	GTAC	3 cut(s)	174, 443, 803
CspAI	ACCGGT	1 cut(s)	604
CspCI	CAANNNNNGTGG	4 cut(s)	247, 282, 548, 583
CviAII	CATG	4 cut(s)	400, 460, 527, 752
CviQI	GTAC	3 cut(s)	174, 443, 803
DdeI	CTNAG	2 cut(s)	342, 439
DpnI	GATC	1 cut(s)	404
DpnII	GATC	1 cut(s)	402
DraI	TTTAAA	1 cut(s)	187
EaeI	YGGCCR	1 cut(s)	813
EagI	CGGCCG	1 cut(s)	813
Ecl136II	GAGCTC	1 cut(s)	103
EclXI	CGGCCG	1 cut(s)	813
Eco130I	CCWWGG	2 cut(s)	369, 723
Eco24I	GRGCYC	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	248
Eco47I	GGWCC	2 cut(s)	586, 602
Eco52I	CGGCCG	1 cut(s)	813
Eco53kI	GAGCTC	1 cut(s)	103
Eco57I	CTGAAG	2 cut(s)	33, 432
EcoICRI	GAGCTC	1 cut(s)	103
EcoRI	GAATTC	1 cut(s)	543
EcoRII	CCWGG	2 cut(s)	355, 702
EcoT14I	CCWWGG	2 cut(s)	369, 723
EcoT38I	GRGCYC	1 cut(s)	105
ErhI	CCWWGG	2 cut(s)	369, 723
FaeI	CATG	4 cut(s)	403, 463, 530, 755
FaqI	GGGAC	2 cut(s)	615, 746
FatI	CATG	4 cut(s)	399, 459, 526, 751
Fnu4HI	GCNGC	7 cut(s)	79, 120, 288, 291, 306, 654, 816
FriOI	GRGCYC	1 cut(s)	105
Fsp4HI	GCNGC	7 cut(s)	79, 120, 288, 291, 306, 654, 816
FspBI	CTAG	1 cut(s)	158
GlaI	GCGC	1 cut(s)	77
GluI	GCNGC	7 cut(s)	79, 120, 288, 291, 306, 654, 816
GsaI	CCCAGC	2 cut(s)	767, 792
GsuI	CTGGAG	2 cut(s)	83, 614
HaeIII	GGCC	1 cut(s)	815
HapII	CCGG	2 cut(s)	243, 605
HhaI	GCGC	1 cut(s)	78
Hin1II	CATG	4 cut(s)	403, 463, 530, 755
Hin6I	GCGC	1 cut(s)	76
HinP1I	GCGC	1 cut(s)	76
HindIII	AAGCTT	1 cut(s)	15
HinfI	GANTC	2 cut(s)	334, 340
HpaII	CCGG	2 cut(s)	243, 605
HphI	GGTGA	1 cut(s)	688
Hpy188I	TCNGA	4 cut(s)	29, 339, 576, 612
Hpy188III	TCNNGA	3 cut(s)	47, 243, 326
HpyAV	CCTTC	4 cut(s)	142, 407, 528, 819
HpyCH4V	TGCA	9 cut(s)	41, 290, 455, 470, 476, 520, 647, 776, 799
HpyF10VI	GCNNNNNNNGC	4 cut(s)	287, 461, 653, 773
HpyF3I	CTNAG	2 cut(s)	342, 439
Hsp92II	CATG	4 cut(s)	403, 463, 530, 755
HspAI	GCGC	1 cut(s)	76
Kpn2I	TCCGGA	1 cut(s)	242
Kzo9I	GATC	1 cut(s)	402
LmnI	GCTCC	4 cut(s)	184, 237, 358, 626
Lsp1109I	GCAGC	3 cut(s)	274, 292, 302
LweI	GCATC	1 cut(s)	100
MaeI	CTAG	1 cut(s)	158
MaeIII	GTNAC	1 cut(s)	824
MalI	GATC	1 cut(s)	404
MboI	GATC	1 cut(s)	402
MboII	GAAGA	2 cut(s)	161, 859
MfeI	CAATTG	2 cut(s)	114, 227
MhlI	GDGCHC	1 cut(s)	105
MluCI	AATT	6 cut(s)	114, 196, 227, 262, 297, 543
MlyI	GAGTC	1 cut(s)	334
MmeI	TCCRAC	1 cut(s)	554
MnlI	CCTC	8 cut(s)	54, 81, 129, 264, 333, 457, 672, 749
MroI	TCCGGA	1 cut(s)	242
MseI	TTAA	4 cut(s)	108, 186, 503, 738
MslI	CAYNNNNRTG	2 cut(s)	525, 756
MspA1I	CMGCKG	1 cut(s)	293
MspI	CCGG	2 cut(s)	243, 605
MspR9I	CCNGG	2 cut(s)	357, 704
MunI	CAATTG	2 cut(s)	114, 227
Mva1269I	GAATGC	1 cut(s)	724
MvaI	CCWGG	2 cut(s)	357, 704
MvnI	CGCG	1 cut(s)	78
MwoI	GCNNNNNNNGC	4 cut(s)	287, 461, 653, 773
NdeII	GATC	1 cut(s)	402
NlaIII	CATG	4 cut(s)	403, 463, 530, 755
NlaIV	GGNNCC	4 cut(s)	155, 354, 465, 603
PaqCI	CACCTGC	2 cut(s)	461, 475
PctI	GAATGC	1 cut(s)	724
PfeI	GAWTC	1 cut(s)	334
PinAI	ACCGGT	1 cut(s)	604
PkrI	GCNGC	7 cut(s)	80, 121, 289, 292, 307, 655, 817
PleI	GAGTC	1 cut(s)	334
PpsI	GAGTC	1 cut(s)	334
PsiI	TTATAA	1 cut(s)	432
Psp124BI	GAGCTC	1 cut(s)	105
Psp6I	CCWGG	2 cut(s)	355, 702
PspFI	CCCAGC	2 cut(s)	763, 788
PspGI	CCWGG	2 cut(s)	355, 702
PspN4I	GGNNCC	4 cut(s)	155, 354, 465, 603
PspPI	GGNCC	2 cut(s)	586, 602
PstI	CTGCAG	2 cut(s)	292, 472
PvuII	CAGCTG	1 cut(s)	293
RsaI	GTAC	3 cut(s)	175, 444, 804
RsaNI	GTAC	3 cut(s)	174, 443, 803
RseI	CAYNNNNRTG	2 cut(s)	525, 756
SacI	GAGCTC	1 cut(s)	105
SaqAI	TTAA	4 cut(s)	108, 186, 503, 738
SatI	GCNGC	7 cut(s)	79, 120, 288, 291, 306, 654, 816
Sau3AI	GATC	1 cut(s)	402
Sau96I	GGNCC	2 cut(s)	586, 602
SbfI	CCTGCAGG	1 cut(s)	472
SchI	GAGTC	1 cut(s)	334
ScrFI	CCNGG	2 cut(s)	357, 704
SdaI	CCTGCAGG	1 cut(s)	472
SduI	GDGCHC	1 cut(s)	105
SfaNI	GCATC	1 cut(s)	100
SfcI	CTRYAG	2 cut(s)	288, 468
SinI	GGWCC	2 cut(s)	586, 602
SmiMI	CAYNNNNRTG	2 cut(s)	525, 756
SmlI	CTYRAG	2 cut(s)	47, 857
SmoI	CTYRAG	2 cut(s)	47, 857
Sse8387I	CCTGCAGG	1 cut(s)	472
Sse9I	AATT	6 cut(s)	114, 196, 227, 262, 297, 543
SsiI	CCGC	5 cut(s)	78, 119, 235, 654, 816
SspI	AATATT	1 cut(s)	166
SspMI	CTAG	1 cut(s)	158
SstI	GAGCTC	1 cut(s)	105
StyD4I	CCNGG	2 cut(s)	355, 702
StyI	CCWWGG	2 cut(s)	369, 723
TasI	AATT	6 cut(s)	114, 196, 227, 262, 297, 543
TauI	GCSGC	4 cut(s)	81, 122, 656, 818
TfiI	GAWTC	1 cut(s)	334
Tru1I	TTAA	4 cut(s)	108, 186, 503, 738
Tru9I	TTAA	4 cut(s)	108, 186, 503, 738
TseI	GCWGC	3 cut(s)	287, 290, 305
TspDTI	ATGAA	2 cut(s)	731, 860
VpaK11BI	GGWCC	2 cut(s)	586, 602
XapI	RAATTY	2 cut(s)	262, 543
XcmI	CCANNNNNNNNNTGG	1 cut(s)	457
XspI	CTAG	1 cut(s)	158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.