Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr08

Orthogroup ID

OG0012801

Physical Location & Seq

Genomic Coordinates Forward (+)

22653531 .. 22658002

Gene Structure 4472 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD08G1182700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1416 bp

ATGTTTGGCGATGGAAGCAAAGCTGCTGCTACCGGATCCGCCCTTATTTTCCTCAATCCTTCTTCCCATCCCCATTCCTATCCCATTCCCCCCGCCTACTCTCCTCCAATCCCCCAATCCCATTCCCGCCTCACTCTGACTACACCACCGTTCACACCCTCCAAATCCAATCCCATTCCCACACCTAACCAAATGGACGACCCAAATCCCACCCTTTTCATCACCGGCGGCCTGTTCTTGGAACCCACGGTTCCCAATTCCCTGCTCAATTCCGTCGTGTCCTTTCAGAAGAACTCTCGGTCTTCGGCTGTCGTTTCCGGCTCGGGTTTGTCGTACGGTTGTAGGCTGAGAGCGGTGGCCGGCGGTGGGTTCTTTTCGGTGAGCTTGAGTAGCGATGGGGTTGTTCGGGAGTCCAAAGGGTGTTTGGTGCAGAACGGAGATGAGGGTTCGGAGGAGGCGGAGGTGGAGGCGGCGGTTACAGAGAGGAAGAGAGAGAAAGTTGGGGTTAGGAGTGGTGGGGCCATGAATACCACCAAGCATTTGTGGGCTGGTGCGATAGCCGCCATGGTTTCCAGAACTTTTGTGGCACCTCTTGAGAGACTAAAGCTGGAGTACATAGTTCGCGGCGAACAGAGGCATTTATTTGAGCTAGTTAGGACCATTGCGGCGAATCAGGGCTTGAGGGGCTTTTGGAAGGGGAACCTAGTCAATATTCTTCGTACAGCTCCATTTAAAGCAATCAATTTCTATGCTTATGATACTTACAGAAAACAATTGCTCTGCTTCTCCGGAAATAAGGAGACTACAAATTTTGAAAGATTTGTTGCTGGTGCTGCAGCCGGAATTACTGCTACCATACTCTGCTTACCTCTTGATACGATTCGGACTCAGTTGGTGGCTCCTGGTGGGGAAGCCTTGGGTGGTGTGATTGGTGCTTTTCGCCACATGATCCAAACTGAAGGGTTCTTTTCCCTTTATAAGGGCTTAGTACCCTCCATTGCAAGCATGGCACCTTCAGGTGCAGTTTTCTATGGTGTCTACGATATATTAAAATCAGCATACCTGCATTCACCTGATGGAAGGAAAAGAATTCACAAGATGAGCCAACAGGGGCAGGGCTGGAGTGCTTTGGATCAACTGGAGTTGGGACCGATGCGGACGTTACTATATGGAGCTATTTCTGGTGCTTGTGCAGAAGCTGCCACATATCCGTTTGAAGTGGTGAGGCGACAGCTTCAACTACAAGTCCAGGAAACTAGAATGAGTGCCTTGGCAACTGGTATTAAAATAGTTGAACATGGAGGCGTCCCAGCTCTCTATGCAGGACTTATTCCCAGCTTGTTACAGGTACTTCCTTCAGCTGCAATAAGTTACTTCGTCTATGAGTTTATGAAGATTGTTCTCAAGGTAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

472

Amino Acids

50.7

Weight (kDa)

9.29

Isoelectric Point (pI)

41.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	175 - 259	6.3e-20	Mitochondrial carrier protein
Mito_carr	PF00153	268 - 355	1.4e-19	Mitochondrial carrier protein
Mito_carr	PF00153	382 - 468	7.9e-19	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78180
fragaria_vesca	FvH4_5g37340 FvH4_5g37340
malus_domestica	MD08G1182700.v1.1 MD15G1368800.v1.1
prunus_persica	Prupe.1G516900_v2.0.a1
pyrus_communis	pycom08g15650 pycom15g33050
rosa_chinensis	RchiOBHm_Chr7g0238991
rosa_laevigata	RLG00000000792
rosa_multiflora	Rmu_sc0004132.1_g000003
rosa_roxburghii	Rroxscaffold_3G00221400
rosa_rugosa	Rorug07G0324300
rosa_samantha	Rh7AG479300 Rh7BG451900 Rh7CG496500 Rh7DG464000
rosa_wichuraiana	Rw7G040010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	978
Acc36I	ACCTGC	1 cut(s)	1071
AccB1I	GGYRCC	2 cut(s)	586, 1009
AccBSI	CCGCTC	1 cut(s)	353
AccI	GTMKAC	1 cut(s)	1038
AccII	CGCG	1 cut(s)	624
AccIII	TCCGGA	1 cut(s)	788
AclWI	GGATC	4 cut(s)	30, 43, 943, 1140
AcoI	YGGCCR	1 cut(s)	357
AcsI	RAATTY	2 cut(s)	808, 1089
AcuI	CTGAAG	3 cut(s)	978, 999, 1341
AcyI	GRCGYC	1 cut(s)	1305
AfaI	GTAC	5 cut(s)	335, 614, 721, 990, 1350
AfiI	CCNNNNNNNGG	3 cut(s)	238, 366, 979
AgsI	TTSAA	4 cut(s)	815, 1217, 1238, 1295
AjnI	CCWGG	2 cut(s)	901, 1248
Alw26I	GTCTC	2 cut(s)	592, 794
AlwI	GGATC	4 cut(s)	30, 43, 943, 1140
AlwNI	CAGNNNCTG	1 cut(s)	1199
Ama87I	CYCGRG	1 cut(s)	322
Aor13HI	TCCGGA	1 cut(s)	788
AoxI	GGCC	3 cut(s)	229, 357, 519
ApeKI	GCWGC	6 cut(s)	23, 26, 833, 836, 1199, 1361
ApoI	RAATTY	2 cut(s)	808, 1089
AspS9I	GGNCC	3 cut(s)	519, 657, 1148
AsuHPI	GGTGA	4 cut(s)	214, 391, 1062, 1234
AvaI	CYCGRG	1 cut(s)	322
AvaII	GGWCC	2 cut(s)	657, 1148
BamHI	GGATCC	1 cut(s)	35
BanI	GGYRCC	2 cut(s)	586, 1009
BbsI	GAAGAC	1 cut(s)	294
BbvI	GCAGC	6 cut(s)	10, 13, 820, 848, 1186, 1348
BccI	CCATC	4 cut(s)	5, 75, 389, 1070
BciT130I	CCWGG	2 cut(s)	903, 1250
BcoDI	GTCTC	2 cut(s)	592, 794
BfaI	CTAG	3 cut(s)	650, 704, 1257
BfmI	CTRYAG	1 cut(s)	834
BfuAI	ACCTGC	1 cut(s)	1071
Bme1390I	CCNGG	2 cut(s)	903, 1250
Bme18I	GGWCC	2 cut(s)	657, 1148
BmeT110I	CYCGRG	1 cut(s)	322
BmgT120I	GGNCC	3 cut(s)	519, 657, 1148
BmiI	GGNNCC	9 cut(s)	37, 243, 252, 520, 588, 701, 900, 1011, 1149
BmrFI	CCNGG	2 cut(s)	903, 1250
BmsI	GCATC	1 cut(s)	1143
BpiI	GAAGAC	1 cut(s)	294
BpmI	CTGGAG	3 cut(s)	629, 1141, 1160
BpuEI	CTTGAG	4 cut(s)	406, 614, 700, 1388
BsaHI	GRCGYC	1 cut(s)	1305
BsaJI	CCNNGG	4 cut(s)	246, 564, 915, 1269
BsaWI	WCCGGW	2 cut(s)	32, 788
Bsc4I	CCNNNNNNNGG	3 cut(s)	238, 366, 979
Bse118I	RCCGGY	2 cut(s)	224, 359
Bse1I	ACTGG	2 cut(s)	1143, 1282
Bse3DI	GCAATG	2 cut(s)	660, 996
BseAI	TCCGGA	1 cut(s)	788
BseBI	CCWGG	2 cut(s)	903, 1250
BseDI	CCNNGG	4 cut(s)	246, 564, 915, 1269
BseGI	GGATG	1 cut(s)	67
BseLI	CCNNNNNNNGG	3 cut(s)	238, 366, 979
BseMI	GCAATG	2 cut(s)	660, 996
BseMII	CTCAG	2 cut(s)	338, 902
BseNI	ACTGG	2 cut(s)	1143, 1282
BseRI	GAGGAG	2 cut(s)	93, 467
BseXI	GCAGC	6 cut(s)	10, 13, 820, 848, 1186, 1348
BseYI	CCCAGC	2 cut(s)	1309, 1334
BsgI	GTGCAG	3 cut(s)	449, 1041, 1212
Bsh1236I	CGCG	1 cut(s)	624
BshFI	GGCC	3 cut(s)	231, 359, 521
BshNI	GGYRCC	2 cut(s)	586, 1009
BsiHKCI	CYCGRG	1 cut(s)	322
BsiSI	CCGG	6 cut(s)	33, 225, 318, 360, 789, 840
BsiWI	CGTACG	1 cut(s)	333
BslFI	GGGAC	2 cut(s)	1161, 1292
BslI	CCNNNNNNNGG	3 cut(s)	238, 366, 979
BsmAI	GTCTC	2 cut(s)	592, 794
BsmFI	GGGAC	2 cut(s)	1161, 1292
BsmI	GAATGC	1 cut(s)	1066
BsnI	GGCC	3 cut(s)	231, 359, 521
BsoBI	CYCGRG	1 cut(s)	322
Bsp13I	TCCGGA	1 cut(s)	788
Bsp143I	GATC	3 cut(s)	35, 948, 1132
Bsp19I	CCATGG	1 cut(s)	564
BspANI	GGCC	3 cut(s)	231, 359, 521
BspCNI	CTCAG	2 cut(s)	339, 901
BspEI	TCCGGA	1 cut(s)	788
BspFNI	CGCG	1 cut(s)	624
BspLI	GGNNCC	9 cut(s)	37, 243, 252, 520, 588, 701, 900, 1011, 1149
BspMAI	CTGCAG	1 cut(s)	838
BspMI	ACCTGC	1 cut(s)	1071
BspPI	GGATC	4 cut(s)	30, 43, 943, 1140
BspT107I	GGYRCC	2 cut(s)	586, 1009
BsrBI	CCGCTC	1 cut(s)	353
BsrDI	GCAATG	2 cut(s)	660, 996
BsrFI	RCCGGY	2 cut(s)	224, 359
BsrI	ACTGG	2 cut(s)	1143, 1282
BssAI	RCCGGY	2 cut(s)	224, 359
BssECI	CCNNGG	4 cut(s)	246, 564, 915, 1269
BssMI	GATC	3 cut(s)	35, 948, 1132
BssNI	GRCGYC	1 cut(s)	1305
BssT1I	CCWWGG	3 cut(s)	564, 915, 1269
Bst2UI	CCWGG	2 cut(s)	903, 1250
Bst4CI	ACNGT	3 cut(s)	150, 250, 338
Bst6I	CTCTTC	1 cut(s)	482
BstACI	GRCGYC	1 cut(s)	1305
BstAPI	GCANNNNNTGC	1 cut(s)	1199
BstC8I	GCNNGC	2 cut(s)	361, 1003
BstDEI	CTNAG	3 cut(s)	347, 888, 985
BstDSI	CCRYGG	2 cut(s)	246, 564
BstENI	CCTNNNNNAGG	1 cut(s)	977
BstF5I	GGATG	1 cut(s)	67
BstFNI	CGCG	1 cut(s)	624
BstKTI	GATC	3 cut(s)	38, 951, 1135
BstMAI	GTCTC	2 cut(s)	592, 794
BstMBI	GATC	3 cut(s)	35, 948, 1132
BstMWI	GCNNNNNNNGC	8 cut(s)	15, 390, 560, 684, 833, 1007, 1199, 1319
BstNI	CCWGG	2 cut(s)	903, 1250
BstSCI	CCNGG	2 cut(s)	901, 1248
BstSFI	CTRYAG	1 cut(s)	834
BstUI	CGCG	1 cut(s)	624
BstV1I	GCAGC	6 cut(s)	10, 13, 820, 848, 1186, 1348
BstV2I	GAAGAC	1 cut(s)	294
BstX2I	RGATCY	1 cut(s)	35
BstYI	RGATCY	1 cut(s)	35
BsuRI	GGCC	3 cut(s)	231, 359, 521
BtgI	CCRYGG	2 cut(s)	246, 564
BtgZI	GCGATG	2 cut(s)	24, 408
BtsCI	GGATG	1 cut(s)	67
BveI	ACCTGC	1 cut(s)	1071
Cac8I	GCNNGC	2 cut(s)	361, 1003
CaiI	CAGNNNCTG	1 cut(s)	1199
Cfr10I	RCCGGY	2 cut(s)	224, 359
Cfr13I	GGNCC	3 cut(s)	519, 657, 1148
CseI	GACGC	1 cut(s)	1294
Csp6I	GTAC	5 cut(s)	334, 613, 720, 989, 1349
CviAII	CATG	5 cut(s)	523, 565, 946, 1006, 1298
CviQI	GTAC	5 cut(s)	334, 613, 720, 989, 1349
DdeI	CTNAG	3 cut(s)	347, 888, 985
DpnI	GATC	3 cut(s)	37, 950, 1134
DpnII	GATC	3 cut(s)	35, 948, 1132
DraI	TTTAAA	1 cut(s)	733
EaeI	YGGCCR	1 cut(s)	357
Eam1104I	CTCTTC	1 cut(s)	482
EarI	CTCTTC	1 cut(s)	482
EciI	GGCGGA	2 cut(s)	28, 473
Eco130I	CCWWGG	3 cut(s)	564, 915, 1269
Eco47I	GGWCC	2 cut(s)	657, 1148
Eco57I	CTGAAG	3 cut(s)	978, 999, 1341
Eco88I	CYCGRG	1 cut(s)	322
EcoNI	CCTNNNNNAGG	1 cut(s)	977
EcoRI	GAATTC	1 cut(s)	1089
EcoRII	CCWGG	2 cut(s)	901, 1248
EcoT14I	CCWWGG	3 cut(s)	564, 915, 1269
ErhI	CCWWGG	3 cut(s)	564, 915, 1269
FaeI	CATG	5 cut(s)	526, 568, 949, 1009, 1301
FaqI	GGGAC	2 cut(s)	1161, 1292
FatI	CATG	5 cut(s)	522, 564, 945, 1005, 1297
FauI	CCCGC	2 cut(s)	100, 134
FblI	GTMKAC	1 cut(s)	1038
FokI	GGATG	1 cut(s)	54
FspBI	CTAG	3 cut(s)	650, 704, 1257
GsaI	CCCAGC	2 cut(s)	1313, 1338
GsuI	CTGGAG	3 cut(s)	629, 1141, 1160
HaeIII	GGCC	3 cut(s)	231, 359, 521
HapII	CCGG	6 cut(s)	33, 225, 318, 360, 789, 840
HgaI	GACGC	1 cut(s)	1294
Hin1I	GRCGYC	1 cut(s)	1305
Hin1II	CATG	5 cut(s)	526, 568, 949, 1009, 1301
HinfI	GANTC	4 cut(s)	410, 670, 880, 886
HpaII	CCGG	6 cut(s)	33, 225, 318, 360, 789, 840
HphI	GGTGA	4 cut(s)	214, 391, 1062, 1234
Hpy166II	GTNNAC	2 cut(s)	153, 1039
Hpy188I	TCNGA	4 cut(s)	138, 288, 451, 885
Hpy188III	TCNNGA	5 cut(s)	407, 573, 593, 789, 872
Hpy8I	GTNNAC	2 cut(s)	153, 1039
Hpy99I	CGWCG	1 cut(s)	278
HpyAV	CCTTC	6 cut(s)	69, 688, 953, 1023, 1074, 1365
HpyCH4III	ACNGT	3 cut(s)	150, 250, 338
HpyCH4IV	ACGT	1 cut(s)	1160
HpyCH4V	TGCA	8 cut(s)	430, 836, 1001, 1022, 1066, 1193, 1322, 1364
HpyF10VI	GCNNNNNNNGC	8 cut(s)	15, 390, 560, 684, 833, 1007, 1199, 1319
HpyF3I	CTNAG	3 cut(s)	347, 888, 985
HpySE526I	ACGT	1 cut(s)	1160
Hsp92I	GRCGYC	1 cut(s)	1305
Hsp92II	CATG	5 cut(s)	526, 568, 949, 1009, 1301
Kpn2I	TCCGGA	1 cut(s)	788
KroI	GCCGGC	1 cut(s)	359
KroNI	GCCGGC	1 cut(s)	361
Kzo9I	GATC	3 cut(s)	35, 948, 1132
LmnI	GCTCC	3 cut(s)	730, 904, 1172
Lsp1109I	GCAGC	6 cut(s)	10, 13, 820, 848, 1186, 1348
LweI	GCATC	1 cut(s)	1143
MaeI	CTAG	3 cut(s)	650, 704, 1257
MaeII	ACGT	1 cut(s)	1160
MaeIII	GTNAC	4 cut(s)	475, 1161, 1341, 1370
MalI	GATC	3 cut(s)	37, 950, 1134
MbiI	CCGCTC	1 cut(s)	353
MboI	GATC	3 cut(s)	35, 948, 1132
MboII	GAAGA	6 cut(s)	54, 294, 301, 499, 707, 1405
MfeI	CAATTG	1 cut(s)	773
MflI	RGATCY	1 cut(s)	35
MluCI	AATT	7 cut(s)	256, 268, 742, 773, 808, 843, 1089
MlyI	GAGTC	2 cut(s)	419, 880
MroI	TCCGGA	1 cut(s)	788
MroNI	GCCGGC	1 cut(s)	359
MseI	TTAA	3 cut(s)	732, 1049, 1284
MspA1I	CMGCKG	1 cut(s)	1361
MspI	CCGG	6 cut(s)	33, 225, 318, 360, 789, 840
MspR9I	CCNGG	2 cut(s)	903, 1250
MunI	CAATTG	1 cut(s)	773
Mva1269I	GAATGC	1 cut(s)	1066
MvaI	CCWGG	2 cut(s)	903, 1250
MvnI	CGCG	1 cut(s)	624
MwoI	GCNNNNNNNGC	8 cut(s)	15, 390, 560, 684, 833, 1007, 1199, 1319
NaeI	GCCGGC	1 cut(s)	361
NcoI	CCATGG	1 cut(s)	564
NdeII	GATC	3 cut(s)	35, 948, 1132
NgoMIV	GCCGGC	1 cut(s)	359
NlaIII	CATG	5 cut(s)	526, 568, 949, 1009, 1301
NlaIV	GGNNCC	9 cut(s)	37, 243, 252, 520, 588, 701, 900, 1011, 1149
PcsI	WCGNNNNNNNCGW	1 cut(s)	329
PctI	GAATGC	1 cut(s)	1066
PdiI	GCCGGC	1 cut(s)	361
PfeI	GAWTC	2 cut(s)	670, 880
Pfl23II	CGTACG	1 cut(s)	333
PfoI	TCCNGGA	1 cut(s)	1248
PleI	GAGTC	2 cut(s)	418, 880
PpsI	GAGTC	2 cut(s)	418, 880
PsiI	TTATAA	1 cut(s)	978
Psp6I	CCWGG	2 cut(s)	901, 1248
PspFI	CCCAGC	2 cut(s)	1309, 1334
PspGI	CCWGG	2 cut(s)	901, 1248
PspLI	CGTACG	1 cut(s)	333
PspN4I	GGNNCC	9 cut(s)	37, 243, 252, 520, 588, 701, 900, 1011, 1149
PspPI	GGNCC	3 cut(s)	519, 657, 1148
PstI	CTGCAG	1 cut(s)	838
PstNI	CAGNNNCTG	1 cut(s)	1199
PsuI	RGATCY	1 cut(s)	35
PvuII	CAGCTG	1 cut(s)	1361
RsaI	GTAC	5 cut(s)	335, 614, 721, 990, 1350
RsaNI	GTAC	5 cut(s)	334, 613, 720, 989, 1349
SaqAI	TTAA	3 cut(s)	732, 1049, 1284
Sau3AI	GATC	3 cut(s)	35, 948, 1132
Sau96I	GGNCC	3 cut(s)	519, 657, 1148
SchI	GAGTC	2 cut(s)	419, 880
ScrFI	CCNGG	2 cut(s)	903, 1250
SfaNI	GCATC	1 cut(s)	1143
SfcI	CTRYAG	1 cut(s)	834
SgrAI	CRCCGGYG	1 cut(s)	224
SinI	GGWCC	2 cut(s)	657, 1148
SmlI	CTYRAG	4 cut(s)	385, 593, 679, 1403
SmoI	CTYRAG	4 cut(s)	385, 593, 679, 1403
Sse9I	AATT	7 cut(s)	256, 268, 742, 773, 808, 843, 1089
SspI	AATATT	1 cut(s)	712
SspMI	CTAG	3 cut(s)	650, 704, 1257
StyD4I	CCNGG	2 cut(s)	901, 1248
StyI	CCWWGG	3 cut(s)	564, 915, 1269
TaaI	ACNGT	3 cut(s)	150, 250, 338
TaiI	ACGT	1 cut(s)	1163
TaqII	GACCGA	2 cut(s)	288, 1165
TasI	AATT	7 cut(s)	256, 268, 742, 773, 808, 843, 1089
TatI	WGTACW	1 cut(s)	612
TauI	GCSGC	5 cut(s)	231, 473, 563, 627, 668
TfiI	GAWTC	2 cut(s)	670, 880
Tru1I	TTAA	3 cut(s)	732, 1049, 1284
Tru9I	TTAA	3 cut(s)	732, 1049, 1284
TseI	GCWGC	6 cut(s)	23, 26, 833, 836, 1199, 1361
TspDTI	ATGAA	3 cut(s)	208, 539, 1406
TspGWI	ACGGA	3 cut(s)	262, 450, 1200
VpaK11BI	GGWCC	2 cut(s)	657, 1148
XagI	CCTNNNNNAGG	1 cut(s)	977
XapI	RAATTY	2 cut(s)	808, 1089
XcmI	CCANNNNNNNNNTGG	3 cut(s)	421, 580, 1003
XmiI	GTMKAC	1 cut(s)	1038
XspI	CTAG	3 cut(s)	650, 704, 1257

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.