Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0012801

Physical Location & Seq

Genomic Coordinates Forward (+)

42506394 .. 42509994

Gene Structure 3601 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G516900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1386 bp

ATGTTTGGCGATGGAAGCAAAGCTGCCAAATCCGCCATTTTCACCAACCCTTCTTCTTCCCATTCGCATTCCAATCCCTCGAACTCTCCAACCCCACAATCCAAACACACTCTGACGAAGACGACGAAAGCCACAGCCCACAAAACCCAAAACCTATTCAATCCCATTCCCACGCATAAAATGGACGACCCAAATTCGAGCCTTTTCATCATCGGCGGCTTGTTTTTGGAACCCACTGTTTCCAATTCTCTGCTCAATTCCGTAGTGTCGTTCCGGAAGTCTTCTTCGGCTGTCGTTTCCGGGTCTGGTTCGTCGTATGGGTTTAGGCTGAGAGCGGTGGCTGGAGGTGGTTTCTTGTCGGTGAGCTTGAAAAGCGATGGGGTTGTACGGGACTCCAAAGGGTGTTTGGTGCAGAACGGAGATGAGGGTTCGGAGGAGGCGGTGGTTGAAGAGACGAGGACAGAGAAAGTTGGGATTAGGGGAGGTAGAGCTATGAACACCACCAAGCATTTGTGGGCTGGTGCTATAGCCGCCATGGTTTCCAGAACTTTTGTTGCACCTCTTGAGAGACTAAAGCTGGAATATATAGTTCGTGGAGAACAGAGGCATCTATTTGAGCTGGTTAAGTCAATTGCGGTTTCTCAGGGCTTGAGGGGCTTTTGGAAGGGGAACTTAGTCAATATTCTTCGTACAGCTCCATTTAAAGCAATCAATTTCTATGCTTATGATACTTACAGAAAACAATTGCTCCGCTTCTCCGGAAATAAGGAGACTACAAATTTTGAGAGGTTTGTTGCCGGTGCTGCAGCTGGAATTACTGCTACCATACTCTGCTTACCTCTTGACACGATTCGGACTAAGTTGGTGGCTCCTGGTGGGGAAGTCTTGGGTGGTGTAATTGGTGCTTTCCACCACATGATCCAAACTGAAGGGTTCTTTTCACTTTATAAGGGCTTGGTACCCTCTATCGCAAGCATGGCACCTTCAGGTGCAGTTTTCTATGGTGTCTATGATATATTAAAATCAGCTTATCTGCATTCGCCAGATGGAAGGAAAAGAATCCAAAAGATGAGCCAACAAGGGCTCGGCCTGAATGCTTTCGACCAACTGGAGCTGGGACCCGTTAGGACATTACTTTATGGAGCTATTGCTGGTGCTTGTGCAGAAGCTGCCACATATCCGTTTGAAGTGGTGAGGAGACAGCTGCAATTGCAAGTCCAGGCAACTAAAATGAGTGCCTTGGCAACTTGTATGAAAATAGTGGAACATGGAGGTGTCCCAGCCCTTTATGCAGGACTTGTTCCCAGCTTGTTACAGGTACTTCCCTCAGCTGCAATAAGTTACTTCGTTTATGAGTTCATGAAGATTGTTCTCAAGGTAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

462

Amino Acids

49.65

Weight (kDa)

9.65

Isoelectric Point (pI)

41.5

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78180
fragaria_vesca	FvH4_5g37340 FvH4_5g37340
malus_domestica	MD08G1182700.v1.1 MD15G1368800.v1.1
prunus_persica	Prupe.1G516900_v2.0.a1
pyrus_communis	pycom08g15650 pycom15g33050
rosa_chinensis	RchiOBHm_Chr7g0238991
rosa_laevigata	RLG00000000792
rosa_multiflora	Rmu_sc0004132.1_g000003
rosa_roxburghii	Rroxscaffold_3G00221400
rosa_rugosa	Rorug07G0324300
rosa_samantha	Rh7AG479300 Rh7BG451900 Rh7CG496500 Rh7DG464000
rosa_wichuraiana	Rw7G040010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	948
Acc65I	GGTACC	1 cut(s)	958
AccB1I	GGYRCC	2 cut(s)	958, 979
AccBSI	CCGCTC	1 cut(s)	335
AccIII	TCCGGA	2 cut(s)	273, 758
AciI	CCGC	7 cut(s)	33, 216, 335, 440, 531, 635, 751
AclWI	GGATC	1 cut(s)	913
AcsI	RAATTY	2 cut(s)	193, 778
AcuI	CTGAAG	2 cut(s)	948, 969
AfaI	GTAC	4 cut(s)	387, 691, 960, 1320
AgsI	TTSAA	4 cut(s)	160, 370, 449, 1187
AjnI	CCWGG	2 cut(s)	871, 1218
Alw26I	GTCTC	4 cut(s)	446, 562, 764, 1192
AlwI	GGATC	1 cut(s)	913
AlwNI	CAGNNNCTG	1 cut(s)	1169
Aor13HI	TCCGGA	2 cut(s)	273, 758
AoxI	GGCC	1 cut(s)	1087
ApeKI	GCWGC	6 cut(s)	23, 803, 806, 1169, 1204, 1331
ApoI	RAATTY	2 cut(s)	193, 778
Asp700I	GAANNNNTTC	1 cut(s)	1097
Asp718I	GGTACC	1 cut(s)	958
AspS9I	GGNCC	1 cut(s)	1118
AsuC2I	CCSGG	1 cut(s)	301
AsuHPI	GGTGA	3 cut(s)	34, 373, 1204
AvaII	GGWCC	1 cut(s)	1118
BanI	GGYRCC	2 cut(s)	958, 979
BanII	GRGCYC	1 cut(s)	1086
BbsI	GAAGAC	2 cut(s)	125, 273
BbvCI	CCTCAGC	1 cut(s)	1327
BbvI	GCAGC	6 cut(s)	10, 790, 818, 1156, 1191, 1318
BccI	CCATC	3 cut(s)	5, 371, 1040
BciT130I	CCWGG	2 cut(s)	873, 1220
BcnI	CCSGG	1 cut(s)	301
BcoDI	GTCTC	4 cut(s)	446, 562, 764, 1192
BfmI	CTRYAG	2 cut(s)	525, 804
BisI	GCNGC	8 cut(s)	24, 217, 531, 804, 807, 1170, 1205, 1332
BlsI	GCNGC	8 cut(s)	25, 218, 532, 805, 808, 1171, 1206, 1333
Bme1390I	CCNGG	3 cut(s)	301, 873, 1220
Bme18I	GGWCC	1 cut(s)	1118
BmgT120I	GGNCC	1 cut(s)	1118
BmiI	GGNNCC	6 cut(s)	231, 870, 960, 981, 1119, 1120
BmrFI	CCNGG	3 cut(s)	301, 873, 1220
BmsI	GCATC	1 cut(s)	616
BpiI	GAAGAC	2 cut(s)	125, 273
BpmI	CTGGAG	2 cut(s)	363, 1130
Bpu10I	CCTNAGC	1 cut(s)	1327
BpuEI	CTTGAG	3 cut(s)	584, 670, 1358
BpuMI	CCSGG	1 cut(s)	301
BsaJI	CCNNGG	2 cut(s)	534, 1239
BsaWI	WCCGGW	2 cut(s)	273, 758
BsaXI	ACNNNNNCTCC	2 cut(s)	732, 762
Bse118I	RCCGGY	1 cut(s)	797
Bse1I	ACTGG	1 cut(s)	1113
BseAI	TCCGGA	2 cut(s)	273, 758
BseBI	CCWGG	2 cut(s)	873, 1220
BseDI	CCNNGG	2 cut(s)	534, 1239
BseMII	CTCAG	3 cut(s)	320, 656, 1341
BseNI	ACTGG	1 cut(s)	1113
BseRI	GAGGAG	2 cut(s)	449, 1210
BseXI	GCAGC	6 cut(s)	10, 790, 818, 1156, 1191, 1318
BseYI	CCCAGC	3 cut(s)	1114, 1279, 1304
BsgI	GTGCAG	3 cut(s)	431, 1011, 1182
BshFI	GGCC	1 cut(s)	1089
BshNI	GGYRCC	2 cut(s)	958, 979
BsiSI	CCGG	4 cut(s)	274, 300, 759, 798
BslFI	GGGAC	3 cut(s)	404, 1131, 1262
BsmAI	GTCTC	4 cut(s)	446, 562, 764, 1192
BsmBI	CGTCTC	1 cut(s)	446
BsmFI	GGGAC	3 cut(s)	404, 1131, 1262
BsmI	GAATGC	3 cut(s)	67, 1036, 1099
BsnI	GGCC	1 cut(s)	1089
Bsp1286I	GDGCHC	1 cut(s)	1086
Bsp13I	TCCGGA	2 cut(s)	273, 758
Bsp143I	GATC	1 cut(s)	918
Bsp19I	CCATGG	1 cut(s)	534
BspACI	CCGC	7 cut(s)	33, 216, 335, 440, 531, 635, 751
BspANI	GGCC	1 cut(s)	1089
BspCNI	CTCAG	3 cut(s)	321, 655, 1340
BspEI	TCCGGA	2 cut(s)	273, 758
BspHI	TCATGA	1 cut(s)	1359
BspLI	GGNNCC	6 cut(s)	231, 870, 960, 981, 1119, 1120
BspMAI	CTGCAG	1 cut(s)	808
BspPI	GGATC	1 cut(s)	913
BspT107I	GGYRCC	2 cut(s)	958, 979
BsrBI	CCGCTC	1 cut(s)	335
BsrFI	RCCGGY	1 cut(s)	797
BsrI	ACTGG	1 cut(s)	1113
BssAI	RCCGGY	1 cut(s)	797
BssECI	CCNNGG	2 cut(s)	534, 1239
BssMI	GATC	1 cut(s)	918
BssT1I	CCWWGG	2 cut(s)	534, 1239
Bst2UI	CCWGG	2 cut(s)	873, 1220
Bst4CI	ACNGT	1 cut(s)	238
Bst6I	CTCTTC	1 cut(s)	444
BstAPI	GCANNNNNTGC	1 cut(s)	1169
BstC8I	GCNNGC	1 cut(s)	973
BstDEI	CTNAG	5 cut(s)	329, 642, 673, 858, 1327
BstDSI	CCRYGG	1 cut(s)	534
BstKTI	GATC	1 cut(s)	921
BstMAI	GTCTC	4 cut(s)	446, 562, 764, 1192
BstMBI	GATC	1 cut(s)	918
BstNI	CCWGG	2 cut(s)	873, 1220
BstSCI	CCNGG	3 cut(s)	299, 871, 1218
BstSFI	CTRYAG	2 cut(s)	525, 804
BstV1I	GCAGC	6 cut(s)	10, 790, 818, 1156, 1191, 1318
BstV2I	GAAGAC	2 cut(s)	125, 273
BsuRI	GGCC	1 cut(s)	1089
BtgI	CCRYGG	1 cut(s)	534
BtgZI	GCGATG	2 cut(s)	24, 390
BtsIMutI	CAGTG	1 cut(s)	234
Cac8I	GCNNGC	1 cut(s)	973
CaiI	CAGNNNCTG	1 cut(s)	1169
CciI	TCATGA	1 cut(s)	1359
Cfr10I	RCCGGY	1 cut(s)	797
Cfr13I	GGNCC	1 cut(s)	1118
Csp6I	GTAC	4 cut(s)	386, 690, 959, 1319
CviAII	CATG	5 cut(s)	535, 916, 976, 1268, 1360
CviQI	GTAC	4 cut(s)	386, 690, 959, 1319
DdeI	CTNAG	5 cut(s)	329, 642, 673, 858, 1327
DpnI	GATC	1 cut(s)	920
DpnII	GATC	1 cut(s)	918
DraI	TTTAAA	1 cut(s)	703
Eam1104I	CTCTTC	1 cut(s)	444
EarI	CTCTTC	1 cut(s)	444
EciI	GGCGGA	1 cut(s)	22
Eco130I	CCWWGG	2 cut(s)	534, 1239
Eco24I	GRGCYC	1 cut(s)	1086
Eco47I	GGWCC	1 cut(s)	1118
Eco57I	CTGAAG	2 cut(s)	948, 969
EcoO109I	RGGNCCY	1 cut(s)	1118
EcoRII	CCWGG	2 cut(s)	871, 1218
EcoT14I	CCWWGG	2 cut(s)	534, 1239
EcoT38I	GRGCYC	1 cut(s)	1086
ErhI	CCWWGG	2 cut(s)	534, 1239
Esp3I	CGTCTC	1 cut(s)	446
FaeI	CATG	5 cut(s)	538, 919, 979, 1271, 1363
FalI	AAGNNNNNCTT	2 cut(s)	656, 688
FaqI	GGGAC	3 cut(s)	404, 1131, 1262
FatI	CATG	5 cut(s)	534, 915, 975, 1267, 1359
Fnu4HI	GCNGC	8 cut(s)	24, 217, 531, 804, 807, 1170, 1205, 1332
FriOI	GRGCYC	1 cut(s)	1086
Fsp4HI	GCNGC	8 cut(s)	24, 217, 531, 804, 807, 1170, 1205, 1332
GluI	GCNGC	8 cut(s)	24, 217, 531, 804, 807, 1170, 1205, 1332
GsaI	CCCAGC	3 cut(s)	1118, 1283, 1308
GsuI	CTGGAG	2 cut(s)	363, 1130
HaeIII	GGCC	1 cut(s)	1089
HapII	CCGG	4 cut(s)	274, 300, 759, 798
Hin1II	CATG	5 cut(s)	538, 919, 979, 1271, 1363
HinfI	GANTC	3 cut(s)	392, 850, 1059
HpaII	CCGG	4 cut(s)	274, 300, 759, 798
HphI	GGTGA	3 cut(s)	34, 373, 1204
Hpy188I	TCNGA	3 cut(s)	114, 433, 855
Hpy188III	TCNNGA	6 cut(s)	274, 543, 563, 759, 842, 1360
Hpy99I	CGWCG	2 cut(s)	127, 316
HpyAV	CCTTC	5 cut(s)	60, 658, 923, 993, 1044
HpyCH4III	ACNGT	1 cut(s)	238
HpyF3I	CTNAG	5 cut(s)	329, 642, 673, 858, 1327
Hsp92II	CATG	5 cut(s)	538, 919, 979, 1271, 1363
KflI	GGGWCCC	1 cut(s)	1118
Kpn2I	TCCGGA	2 cut(s)	273, 758
KpnI	GGTACC	1 cut(s)	962
Kzo9I	GATC	1 cut(s)	918
LmnI	GCTCC	5 cut(s)	700, 753, 874, 1111, 1142
Lsp1109I	GCAGC	6 cut(s)	10, 790, 818, 1156, 1191, 1318
LweI	GCATC	1 cut(s)	616
MaeIII	GTNAC	2 cut(s)	1311, 1340
MalI	GATC	1 cut(s)	920
MbiI	CCGCTC	1 cut(s)	335
MboI	GATC	1 cut(s)	918
MboII	GAAGA	8 cut(s)	45, 48, 130, 273, 276, 461, 677, 1375
MfeI	CAATTG	3 cut(s)	630, 743, 1208
MhlI	GDGCHC	1 cut(s)	1086
MlyI	GAGTC	1 cut(s)	386
MmeI	TCCRAC	1 cut(s)	113
MroI	TCCGGA	2 cut(s)	273, 758
MroXI	GAANNNNTTC	1 cut(s)	1097
MseI	TTAA	3 cut(s)	624, 702, 1019
MslI	CAYNNNNRTG	1 cut(s)	1272
MspA1I	CMGCKG	3 cut(s)	809, 1204, 1331
MspI	CCGG	4 cut(s)	274, 300, 759, 798
MspR9I	CCNGG	3 cut(s)	301, 873, 1220
MunI	CAATTG	3 cut(s)	630, 743, 1208
Mva1269I	GAATGC	3 cut(s)	67, 1036, 1099
MvaI	CCWGG	2 cut(s)	873, 1220
NciI	CCSGG	1 cut(s)	301
NcoI	CCATGG	1 cut(s)	534
NdeII	GATC	1 cut(s)	918
NlaIII	CATG	5 cut(s)	538, 919, 979, 1271, 1363
NlaIV	GGNNCC	6 cut(s)	231, 870, 960, 981, 1119, 1120
NmeAIII	GCCGAG	1 cut(s)	1065
PagI	TCATGA	1 cut(s)	1359
PcsI	WCGNNNNNNNCGW	1 cut(s)	122
PctI	GAATGC	3 cut(s)	67, 1036, 1099
PdmI	GAANNNNTTC	1 cut(s)	1097
PfeI	GAWTC	2 cut(s)	850, 1059
PkrI	GCNGC	8 cut(s)	25, 218, 532, 805, 808, 1171, 1206, 1333
PleI	GAGTC	1 cut(s)	386
PpsI	GAGTC	1 cut(s)	386
PpuMI	RGGWCCY	1 cut(s)	1118
PsiI	TTATAA	1 cut(s)	948
Psp5II	RGGWCCY	1 cut(s)	1118
Psp6I	CCWGG	2 cut(s)	871, 1218
PspFI	CCCAGC	3 cut(s)	1114, 1279, 1304
PspGI	CCWGG	2 cut(s)	871, 1218
PspN4I	GGNNCC	6 cut(s)	231, 870, 960, 981, 1119, 1120
PspPI	GGNCC	1 cut(s)	1118
PspPPI	RGGWCCY	1 cut(s)	1118
PstI	CTGCAG	1 cut(s)	808
PstNI	CAGNNNCTG	1 cut(s)	1169
PvuII	CAGCTG	3 cut(s)	809, 1204, 1331
RsaI	GTAC	4 cut(s)	387, 691, 960, 1320
RsaNI	GTAC	4 cut(s)	386, 690, 959, 1319
RseI	CAYNNNNRTG	1 cut(s)	1272
SaqAI	TTAA	3 cut(s)	624, 702, 1019
SatI	GCNGC	8 cut(s)	24, 217, 531, 804, 807, 1170, 1205, 1332
Sau3AI	GATC	1 cut(s)	918
Sau96I	GGNCC	1 cut(s)	1118
SchI	GAGTC	1 cut(s)	386
ScrFI	CCNGG	3 cut(s)	301, 873, 1220
SduI	GDGCHC	1 cut(s)	1086
SfaNI	GCATC	1 cut(s)	616
SfcI	CTRYAG	2 cut(s)	525, 804
SinI	GGWCC	1 cut(s)	1118
SmiMI	CAYNNNNRTG	1 cut(s)	1272
SmlI	CTYRAG	3 cut(s)	563, 649, 1373
SmoI	CTYRAG	3 cut(s)	563, 649, 1373
SsiI	CCGC	7 cut(s)	33, 216, 335, 440, 531, 635, 751
SspI	AATATT	1 cut(s)	682
StyD4I	CCNGG	3 cut(s)	299, 871, 1218
StyI	CCWWGG	2 cut(s)	534, 1239
TaaI	ACNGT	1 cut(s)	238
TaqI	TCGA	3 cut(s)	80, 197, 1101
TauI	GCSGC	2 cut(s)	219, 533
TfiI	GAWTC	2 cut(s)	850, 1059
Tru1I	TTAA	3 cut(s)	624, 702, 1019
Tru9I	TTAA	3 cut(s)	624, 702, 1019
TscAI	CASTG	1 cut(s)	241
TseI	GCWGC	6 cut(s)	23, 803, 806, 1169, 1204, 1331
TspDTI	ATGAA	5 cut(s)	196, 509, 1268, 1348, 1376
TspGWI	ACGGA	3 cut(s)	250, 432, 1170
TspRI	CASTG	1 cut(s)	241
VpaK11BI	GGWCC	1 cut(s)	1118
XapI	RAATTY	2 cut(s)	193, 778
XcmI	CCANNNNNNNNNTGG	2 cut(s)	178, 403
XmnI	GAANNNNTTC	1 cut(s)	1097

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.