Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr7

Orthogroup ID

OG0012801

Physical Location & Seq

Genomic Coordinates Reverse (-)

61792256 .. 61795552

Gene Structure 3297 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw7G040010.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGCCCCCCTCGGAGCTCTCTTGCTCTGCAAACCCCAACCTCCACGACTCAAACTCCGGCCTATTCGTCACCGGCGGTTTGTTCCTGGAGCCCACCGTCCCCAATTCGCTGCTCAATTCCGTCTCGTTCAGAAAGACCTCAAACGCCGTCGTTTCCGGGTCGGGTTATGCGTGCCGTTTGAGCAGCGATGGGGTTGTTCGGGAGTCGAAAGGGGGGTGTTTGGTGCAGAACGGCGAGGAGGGCTCGGAGGAAGCAGCGGTGGTGGTGGTTCAAGAAGAGAAGAGAGAGAAAGTTGGGATTAGGAGAGGAAGGGCCATGAACACCACCAAGCATTTGTGGGCTGGTGCCATAGCCGCCATGGTTTCCAGAACGTTTGTTGCGCCGCTTGAGAGACTAAAGCTGGAGTATATAGTTCGTGGTGAACGGAGGCATTTGTTTGAGCTTGTTAAGAGCATAGCGGTTTCTCAGGGCGTGAGGGGGTTTTGGAAGGGGAACTTAGTCAATATTCTTCGCACAGCTCCATTTAAAGCAATCAATTTTTATGCATATGATACTTACAGAAAACAATTGCTTAGATTTTCTGGAAATAAGGAGACTACAAATTTTGAGAGATTCGTTGCTGGTGCTGCTGCTGGAATTACTGCTACCATACTCTGCTTACCTCTTGACACAATTCGAACTAAGCTAGTGGCTCCGGGTGGGGAATCCTTGGGCGGTGTCATTGGTGCTTTCCGCCACATGATCCAGACTGAAGGGTTCTTTTCCCTTTATAAGGGCCTAGTACCATCCATAGCAAGCATGGCACCTTCAGGTGCAGTTTTCTATGGTGTCTATGACATATTAAAATCAGCTTACTTGCATTCACCGAATGGAAGGAAAAGAATTCAGAAAATGAACCAGCACGGTGAGCACCTGAATGCTTTTGATCAACTGGAGTTGGGACCGGTTAGGACATTACTCTATGGAGCTATTGCTGGTGCCTGTGCAGAAGCTGCCACTTATCCATTTGAAGTTGTGAGGAGACAGCTTCAATTGCAATCCCAGGCTACTAAAATGAGCACCTTGGCGACTTGTATTAAGATAGTTGAACGAGGAGGGGTCCCAGCACTCTATGCAGGACTTGTTCCCAGCTTGTTACAGGTACTTCCATCGGCTGCAATAAGTTACTTTGTCTATGAGTTCATGAAAATTGTTCTCAAGGTAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

402

Amino Acids

43.7

Weight (kDa)

9.51

Isoelectric Point (pI)

46.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Mito_carr	PF00153	106 - 191	1.4e-19	Mitochondrial carrier protein
Mito_carr	PF00153	199 - 286	8.2e-20	Mitochondrial carrier protein
Mito_carr	PF00153	313 - 399	2.4e-20	Mitochondrial carrier protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78180
fragaria_vesca	FvH4_5g37340 FvH4_5g37340
malus_domestica	MD08G1182700.v1.1 MD15G1368800.v1.1
prunus_persica	Prupe.1G516900_v2.0.a1
pyrus_communis	pycom08g15650 pycom15g33050
rosa_chinensis	RchiOBHm_Chr7g0238991
rosa_laevigata	RLG00000000792
rosa_multiflora	Rmu_sc0004132.1_g000003
rosa_roxburghii	Rroxscaffold_3G00221400
rosa_rugosa	Rorug07G0324300
rosa_samantha	Rh7AG479300 Rh7BG451900 Rh7CG496500 Rh7DG464000
rosa_wichuraiana	Rw7G040010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	771
AccB1I	GGYRCC	3 cut(s)	344, 802, 977
AciI	CCGC	7 cut(s)	75, 257, 354, 383, 458, 714, 733
AclI	AACGTT	1 cut(s)	371
AclWI	GGATC	1 cut(s)	736
AcsI	RAATTY	2 cut(s)	601, 882
AcuI	CTGAAG	2 cut(s)	771, 792
AfaI	GTAC	2 cut(s)	783, 1143
AfiI	CCNNNNNNNGG	1 cut(s)	772
AgeI	ACCGGT	1 cut(s)	943
AgsI	TTSAA	4 cut(s)	272, 1010, 1031, 1088
AjnI	CCWGG	2 cut(s)	84, 1041
Alw21I	GWGCWC	3 cut(s)	18, 912, 1061
Alw26I	GTCTC	4 cut(s)	127, 385, 587, 1015
AlwI	GGATC	1 cut(s)	736
AlwNI	CAGNNNCTG	1 cut(s)	992
AoxI	GGCC	3 cut(s)	58, 312, 775
ApeKI	GCWGC	7 cut(s)	109, 183, 254, 626, 629, 992, 1154
ApoI	RAATTY	2 cut(s)	601, 882
AsiGI	ACCGGT	1 cut(s)	943
AspLEI	GCGC	1 cut(s)	382
AspS9I	GGNCC	4 cut(s)	312, 775, 941, 1099
AsuC2I	CCSGG	2 cut(s)	157, 696
AsuHPI	GGTGA	4 cut(s)	61, 431, 855, 917
AsuII	TTCGAA	1 cut(s)	676
AvaII	GGWCC	2 cut(s)	941, 1099
BanI	GGYRCC	3 cut(s)	344, 802, 977
BanII	GRGCYC	3 cut(s)	18, 93, 245
Bbv12I	GWGCWC	3 cut(s)	18, 912, 1061
BbvI	GCAGC	7 cut(s)	96, 195, 266, 613, 616, 979, 1141
BccI	CCATC	3 cut(s)	182, 793, 1156
BceAI	ACGGC	3 cut(s)	131, 159, 247
BciT130I	CCWGG	2 cut(s)	86, 1043
BclI	TGATCA	1 cut(s)	925
BcnI	CCSGG	2 cut(s)	157, 696
BcoDI	GTCTC	4 cut(s)	127, 385, 587, 1015
BfaI	CTAG	2 cut(s)	686, 779
BisI	GCNGC	9 cut(s)	110, 184, 255, 354, 383, 627, 630, 993, 1155
BlsI	GCNGC	9 cut(s)	111, 185, 256, 355, 384, 628, 631, 994, 1156
Bme1390I	CCNGG	4 cut(s)	86, 157, 696, 1043
Bme18I	GGWCC	2 cut(s)	941, 1099
BmgT120I	GGNCC	4 cut(s)	312, 775, 941, 1099
BmiI	GGNNCC	8 cut(s)	90, 346, 693, 804, 942, 979, 1100, 1101
BmrFI	CCNGG	4 cut(s)	86, 157, 696, 1043
BplI	GAGNNNNNCTC	2 cut(s)	227, 259
BpmI	CTGGAG	3 cut(s)	107, 422, 953
Bpu14I	TTCGAA	1 cut(s)	676
BpuEI	CTTGAG	2 cut(s)	407, 1181
BpuMI	CCSGG	2 cut(s)	157, 696
BsaJI	CCNNGG	5 cut(s)	9, 357, 708, 1041, 1062
BsaWI	WCCGGW	1 cut(s)	943
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	1 cut(s)	772
Bse118I	RCCGGY	2 cut(s)	71, 943
Bse1I	ACTGG	1 cut(s)	936
BseBI	CCWGG	2 cut(s)	86, 1043
BseDI	CCNNGG	5 cut(s)	9, 357, 708, 1041, 1062
BseGI	GGATG	1 cut(s)	785
BseLI	CCNNNNNNNGG	1 cut(s)	772
BseMII	CTCAG	1 cut(s)	479
BseNI	ACTGG	1 cut(s)	936
BseRI	GAGGAG	3 cut(s)	251, 1033, 1107
BseXI	GCAGC	7 cut(s)	96, 195, 266, 613, 616, 979, 1141
BseYI	CCCAGC	2 cut(s)	1102, 1127
BsgI	GTGCAG	3 cut(s)	245, 834, 1005
BshFI	GGCC	3 cut(s)	60, 314, 777
BshNI	GGYRCC	3 cut(s)	344, 802, 977
BshTI	ACCGGT	1 cut(s)	943
BsiHKAI	GWGCWC	3 cut(s)	18, 912, 1061
BsiSI	CCGG	5 cut(s)	57, 72, 156, 695, 944
BslFI	GGGAC	3 cut(s)	83, 954, 1085
BslI	CCNNNNNNNGG	1 cut(s)	772
BsmAI	GTCTC	4 cut(s)	127, 385, 587, 1015
BsmBI	CGTCTC	1 cut(s)	127
BsmFI	GGGAC	3 cut(s)	83, 954, 1085
BsmI	GAATGC	2 cut(s)	859, 922
BsnI	GGCC	3 cut(s)	60, 314, 777
Bsp119I	TTCGAA	1 cut(s)	676
Bsp1286I	GDGCHC	5 cut(s)	18, 93, 245, 912, 1061
Bsp143I	GATC	2 cut(s)	741, 925
Bsp19I	CCATGG	1 cut(s)	357
BspACI	CCGC	7 cut(s)	75, 257, 354, 383, 458, 714, 733
BspANI	GGCC	3 cut(s)	60, 314, 777
BspCNI	CTCAG	1 cut(s)	478
BspHI	TCATGA	1 cut(s)	1182
BspLI	GGNNCC	8 cut(s)	90, 346, 693, 804, 942, 979, 1100, 1101
BspPI	GGATC	1 cut(s)	736
BspT104I	TTCGAA	1 cut(s)	676
BspT107I	GGYRCC	3 cut(s)	344, 802, 977
BsrFI	RCCGGY	2 cut(s)	71, 943
BsrI	ACTGG	1 cut(s)	936
BssAI	RCCGGY	2 cut(s)	71, 943
BssECI	CCNNGG	5 cut(s)	9, 357, 708, 1041, 1062
BssMI	GATC	2 cut(s)	741, 925
BssT1I	CCWWGG	3 cut(s)	357, 708, 1062
Bst2UI	CCWGG	2 cut(s)	86, 1043
Bst4CI	ACNGT	2 cut(s)	97, 905
Bst6I	CTCTTC	2 cut(s)	270, 275
BstAPI	GCANNNNNTGC	2 cut(s)	992, 1112
BstBI	TTCGAA	1 cut(s)	676
BstC8I	GCNNGC	2 cut(s)	172, 796
BstDEI	CTNAG	4 cut(s)	465, 496, 572, 681
BstDSI	CCRYGG	1 cut(s)	357
BstENI	CCTNNNNNAGG	1 cut(s)	770
BstF5I	GGATG	1 cut(s)	785
BstHHI	GCGC	1 cut(s)	382
BstKTI	GATC	2 cut(s)	744, 928
BstMAI	GTCTC	4 cut(s)	127, 385, 587, 1015
BstMBI	GATC	2 cut(s)	741, 925
BstMWI	GCNNNNNNNGC	9 cut(s)	180, 240, 353, 626, 800, 907, 992, 1033, 1112
BstNI	CCWGG	2 cut(s)	86, 1043
BstSCI	CCNGG	4 cut(s)	84, 155, 694, 1041
BstV1I	GCAGC	7 cut(s)	96, 195, 266, 613, 616, 979, 1141
BsuRI	GGCC	3 cut(s)	60, 314, 777
BtgI	CCRYGG	1 cut(s)	357
BtgZI	GCGATG	1 cut(s)	201
BtsCI	GGATG	1 cut(s)	785
Cac8I	GCNNGC	2 cut(s)	172, 796
CaiI	CAGNNNCTG	1 cut(s)	992
CciI	TCATGA	1 cut(s)	1182
CfoI	GCGC	1 cut(s)	382
Cfr10I	RCCGGY	2 cut(s)	71, 943
Cfr13I	GGNCC	4 cut(s)	312, 775, 941, 1099
Csp6I	GTAC	2 cut(s)	782, 1142
CspAI	ACCGGT	1 cut(s)	943
CviAII	CATG	5 cut(s)	316, 358, 739, 799, 1183
CviQI	GTAC	2 cut(s)	782, 1142
DdeI	CTNAG	4 cut(s)	465, 496, 572, 681
DpnI	GATC	2 cut(s)	743, 927
DpnII	GATC	2 cut(s)	741, 925
DraI	TTTAAA	1 cut(s)	526
Eam1104I	CTCTTC	2 cut(s)	270, 275
EarI	CTCTTC	2 cut(s)	270, 275
EciI	GGCGGA	1 cut(s)	722
Ecl136II	GAGCTC	1 cut(s)	16
Eco130I	CCWWGG	3 cut(s)	357, 708, 1062
Eco24I	GRGCYC	3 cut(s)	18, 93, 245
Eco47I	GGWCC	2 cut(s)	941, 1099
Eco53kI	GAGCTC	1 cut(s)	16
Eco57I	CTGAAG	2 cut(s)	771, 792
EcoICRI	GAGCTC	1 cut(s)	16
EcoNI	CCTNNNNNAGG	1 cut(s)	770
EcoO109I	RGGNCCY	2 cut(s)	775, 1099
EcoRI	GAATTC	1 cut(s)	882
EcoRII	CCWGG	2 cut(s)	84, 1041
EcoT14I	CCWWGG	3 cut(s)	357, 708, 1062
EcoT22I	ATGCAT	1 cut(s)	547
EcoT38I	GRGCYC	3 cut(s)	18, 93, 245
ErhI	CCWWGG	3 cut(s)	357, 708, 1062
Esp3I	CGTCTC	1 cut(s)	127
FaeI	CATG	5 cut(s)	319, 361, 742, 802, 1186
FalI	AAGNNNNNCTT	2 cut(s)	479, 511
FaqI	GGGAC	3 cut(s)	83, 954, 1085
FatI	CATG	5 cut(s)	315, 357, 738, 798, 1182
FauNDI	CATATG	1 cut(s)	547
FbaI	TGATCA	1 cut(s)	925
Fnu4HI	GCNGC	9 cut(s)	110, 184, 255, 354, 383, 627, 630, 993, 1155
FokI	GGATG	1 cut(s)	772
FriOI	GRGCYC	3 cut(s)	18, 93, 245
Fsp4HI	GCNGC	9 cut(s)	110, 184, 255, 354, 383, 627, 630, 993, 1155
FspBI	CTAG	2 cut(s)	686, 779
GlaI	GCGC	1 cut(s)	381
GluI	GCNGC	9 cut(s)	110, 184, 255, 354, 383, 627, 630, 993, 1155
GsaI	CCCAGC	2 cut(s)	1106, 1131
GsuI	CTGGAG	3 cut(s)	107, 422, 953
HaeIII	GGCC	3 cut(s)	60, 314, 777
HapII	CCGG	5 cut(s)	57, 72, 156, 695, 944
HhaI	GCGC	1 cut(s)	382
Hin1II	CATG	5 cut(s)	319, 361, 742, 802, 1186
Hin6I	GCGC	1 cut(s)	380
HinP1I	GCGC	1 cut(s)	380
HinfI	GANTC	4 cut(s)	47, 203, 612, 704
HpaII	CCGG	5 cut(s)	57, 72, 156, 695, 944
HphI	GGTGA	4 cut(s)	61, 431, 855, 917
Hpy166II	GTNNAC	1 cut(s)	422
Hpy188I	TCNGA	4 cut(s)	13, 131, 247, 888
Hpy188III	TCNNGA	7 cut(s)	200, 272, 366, 582, 665, 745, 1183
Hpy8I	GTNNAC	1 cut(s)	422
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	5 cut(s)	303, 481, 746, 816, 867
HpyCH4III	ACNGT	2 cut(s)	97, 905
HpyCH4IV	ACGT	1 cut(s)	371
HpyCH4V	TGCA	9 cut(s)	29, 226, 545, 815, 859, 986, 1036, 1115, 1157
HpyF10VI	GCNNNNNNNGC	9 cut(s)	180, 240, 353, 626, 800, 907, 992, 1033, 1112
HpyF3I	CTNAG	4 cut(s)	465, 496, 572, 681
HpySE526I	ACGT	1 cut(s)	371
Hsp92II	CATG	5 cut(s)	319, 361, 742, 802, 1186
HspAI	GCGC	1 cut(s)	380
KflI	GGGWCCC	1 cut(s)	1099
Ksp22I	TGATCA	1 cut(s)	925
Kzo9I	GATC	2 cut(s)	741, 925
LmnI	GCTCC	5 cut(s)	13, 88, 523, 697, 965
Lsp1109I	GCAGC	7 cut(s)	96, 195, 266, 613, 616, 979, 1141
MaeI	CTAG	2 cut(s)	686, 779
MaeII	ACGT	1 cut(s)	371
MaeIII	GTNAC	3 cut(s)	67, 1134, 1163
MalI	GATC	2 cut(s)	743, 927
MboI	GATC	2 cut(s)	741, 925
MboII	GAAGA	3 cut(s)	287, 292, 500
MfeI	CAATTG	2 cut(s)	566, 1031
MhlI	GDGCHC	5 cut(s)	18, 93, 245, 912, 1061
MlyI	GAGTC	2 cut(s)	41, 212
Mph1103I	ATGCAT	1 cut(s)	547
MseI	TTAA	4 cut(s)	447, 525, 842, 1077
MslI	CAYNNNNRTG	1 cut(s)	915
MspA1I	CMGCKG	1 cut(s)	257
MspI	CCGG	5 cut(s)	57, 72, 156, 695, 944
MspR9I	CCNGG	4 cut(s)	86, 157, 696, 1043
MunI	CAATTG	2 cut(s)	566, 1031
Mva1269I	GAATGC	2 cut(s)	859, 922
MvaI	CCWGG	2 cut(s)	86, 1043
MwoI	GCNNNNNNNGC	9 cut(s)	180, 240, 353, 626, 800, 907, 992, 1033, 1112
NciI	CCSGG	2 cut(s)	157, 696
NcoI	CCATGG	1 cut(s)	357
NdeI	CATATG	1 cut(s)	547
NdeII	GATC	2 cut(s)	741, 925
NlaIII	CATG	5 cut(s)	319, 361, 742, 802, 1186
NlaIV	GGNNCC	8 cut(s)	90, 346, 693, 804, 942, 979, 1100, 1101
NmuCI	GTSAC	1 cut(s)	67
NsiI	ATGCAT	1 cut(s)	547
NspV	TTCGAA	1 cut(s)	676
PagI	TCATGA	1 cut(s)	1182
PcsI	WCGNNNNNNNCGW	1 cut(s)	167
PctI	GAATGC	2 cut(s)	859, 922
PfeI	GAWTC	2 cut(s)	612, 704
PfoI	TCCNGGA	1 cut(s)	84
PinAI	ACCGGT	1 cut(s)	943
PkrI	GCNGC	9 cut(s)	111, 185, 256, 355, 384, 628, 631, 994, 1156
PleI	GAGTC	2 cut(s)	41, 211
PpsI	GAGTC	2 cut(s)	41, 211
PpuMI	RGGWCCY	1 cut(s)	1099
PsiI	TTATAA	1 cut(s)	771
Psp124BI	GAGCTC	1 cut(s)	18
Psp1406I	AACGTT	1 cut(s)	371
Psp5II	RGGWCCY	1 cut(s)	1099
Psp6I	CCWGG	2 cut(s)	84, 1041
PspFI	CCCAGC	2 cut(s)	1102, 1127
PspGI	CCWGG	2 cut(s)	84, 1041
PspN4I	GGNNCC	8 cut(s)	90, 346, 693, 804, 942, 979, 1100, 1101
PspPI	GGNCC	4 cut(s)	312, 775, 941, 1099
PspPPI	RGGWCCY	1 cut(s)	1099
PstNI	CAGNNNCTG	1 cut(s)	992
RsaI	GTAC	2 cut(s)	783, 1143
RsaNI	GTAC	2 cut(s)	782, 1142
RseI	CAYNNNNRTG	1 cut(s)	915
SacI	GAGCTC	1 cut(s)	18
SaqAI	TTAA	4 cut(s)	447, 525, 842, 1077
SatI	GCNGC	9 cut(s)	110, 184, 255, 354, 383, 627, 630, 993, 1155
Sau3AI	GATC	2 cut(s)	741, 925
Sau96I	GGNCC	4 cut(s)	312, 775, 941, 1099
SchI	GAGTC	2 cut(s)	41, 212
ScrFI	CCNGG	4 cut(s)	86, 157, 696, 1043
SduI	GDGCHC	5 cut(s)	18, 93, 245, 912, 1061
SfuI	TTCGAA	1 cut(s)	676
SgrAI	CRCCGGYG	1 cut(s)	71
SinI	GGWCC	2 cut(s)	941, 1099
SmiMI	CAYNNNNRTG	1 cut(s)	915
SmlI	CTYRAG	2 cut(s)	386, 1196
SmoI	CTYRAG	2 cut(s)	386, 1196
SsiI	CCGC	7 cut(s)	75, 257, 354, 383, 458, 714, 733
SspI	AATATT	1 cut(s)	505
SspMI	CTAG	2 cut(s)	686, 779
SstI	GAGCTC	1 cut(s)	18
StyD4I	CCNGG	4 cut(s)	84, 155, 694, 1041
StyI	CCWWGG	3 cut(s)	357, 708, 1062
TaaI	ACNGT	2 cut(s)	97, 905
TaiI	ACGT	1 cut(s)	374
TaqI	TCGA	2 cut(s)	206, 676
TauI	GCSGC	2 cut(s)	356, 385
TfiI	GAWTC	2 cut(s)	612, 704
Tru1I	TTAA	4 cut(s)	447, 525, 842, 1077
Tru9I	TTAA	4 cut(s)	447, 525, 842, 1077
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	7 cut(s)	109, 183, 254, 626, 629, 992, 1154
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	4 cut(s)	332, 908, 1171, 1199
TspGWI	ACGGA	2 cut(s)	109, 439
VpaK11BI	GGWCC	2 cut(s)	941, 1099
XagI	CCTNNNNNAGG	1 cut(s)	770
XapI	RAATTY	2 cut(s)	601, 882
XcmI	CCANNNNNNNNNTGG	2 cut(s)	355, 796
XspI	CTAG	2 cut(s)	686, 779
Zsp2I	ATGCAT	1 cut(s)	547

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.