Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr8

Orthogroup ID

OG0012801

Physical Location & Seq

Genomic Coordinates Forward (+)

15407676 .. 15411678

Gene Structure 4003 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom08g15650.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1506 bp

ATGTCTAAAAATGTTGAGACTAATTTGAAACAATGTAAAAGATTGAGGAGTAAGTCCGTAGGAGAGAACTGGATTTTATACTGTGCATGTTTAACGTTTGGCGATGGAAGCAAAGCTGCCGCTACCGAATCCGCCATTATTTTCCCCAATCCTTCTTCCCATTCCTATCCCATTCCCCTCTCCTACTCTCCAATCCCCCAATCCCATTCCCGCCTCACTCTGACTACACCACCATTCACACCCTCCAAATCCAATCCCAATCCCATTCCCACGCCTAACCAAATGGACGACCCAAATGCCACCCTTTTCATCACCGGCGGCCTGTTCTTGGAACCCACGGTTCCCAATTCCCTGCTCAATTCCGTCGTGTCCTTTCAGAAGAACTCTCCGTCTGCGGCTGTCGTTTCCGGGTCGGGTTTGTCGTACGGGTGTAGGCTGAGAGCGGTGGCCGGCGGTGGGTTCTTTTCGGTGAGCTTGAGTAGCGATGGGGTTGTTCGGGAGTCCAAGGGGTGTTTGGTGCAGAACGGAGATGAGGGTTCGGAGGAGGCGGAGGCGGAAGCGGTGGTTACAGAGAGGAAGAGAGAGAAAGTTGGGGTTAGGAGTGGTGGGGCCATGAATACCACCAAGCATTTGTGGGCTGGTGCTATAGCCGCCATGGTTTCCAGAACTTTTGTGGCACCTCTTGAGAGACTAAAGCTGGAGTACATAGTTCGCGGCGAACAGAGGCATTTATTTGAGCTAGTTAGGACCATTGCAGCTAATCAGGGCTTGAGGGGGTTTTGGAAGGGGAACCTAGTCAATATTCTTCGTACAGCTCCATTTAAAGCAATCAATTTCTATGCTTATGATACTTACAGAAAACAATTGCTCTGCGTCTCCGGAAATAAGGAGACTACAAATTTTGAAAGATTTGTTGCTGGTGCTGCAGCCGGAATTACTGCTACCATACTCTGCTTACCTCTTGATACGATTCGGACTCAGTTGGTGGCTCCTGGTGGGGAAGCCTTGGGTGGTGTGATTGGTGCTTTTCGCCACATGATCCAAACTGAAGGGTTCTTTTCCCTTTATAAGGGCTTAGTACCCTCCATTGCAAGCATGGCACCTTCAGGTGCAGTTTTCTATGGTGTCTACGATATATTAAAATCAGCATACCTGCATTCACCTGATGGAAGGAAAAGAATTCACAAGATGAGCCAACAGGGGCAGGGCCGGAGTGCTTTGGATCAACTGGAGTTGGGACCGATTCGGACATTACTATATGGAGCTATTTCTGGTGCTTGTGCAGAAGCTGCCACATATCCGTTTGAAGTGGTGAGGCGACAGCTTCAACTACAAGTCCAGGAAACTAGAATGAGTGCCTTGGCAACTGGTATTAAAATAGTTGAACATGGAGGTGTCCCAGCTCTCTATGCAGGACTTATTCCCAGCTTGTTACAGGTACTTCCTTCAGCCGCAATAAGTTACTTCGTCTATGAGTTTATGAAGATTGTTCTCAAGGTAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

502

Amino Acids

54.04

Weight (kDa)

9.3

Isoelectric Point (pI)

43.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78180
fragaria_vesca	FvH4_5g37340 FvH4_5g37340
malus_domestica	MD08G1182700.v1.1 MD15G1368800.v1.1
prunus_persica	Prupe.1G516900_v2.0.a1
pyrus_communis	pycom08g15650 pycom15g33050
rosa_chinensis	RchiOBHm_Chr7g0238991
rosa_laevigata	RLG00000000792
rosa_multiflora	Rmu_sc0004132.1_g000003
rosa_roxburghii	Rroxscaffold_3G00221400
rosa_rugosa	Rorug07G0324300
rosa_samantha	Rh7AG479300 Rh7BG451900 Rh7CG496500 Rh7DG464000
rosa_wichuraiana	Rw7G040010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1068
Acc36I	ACCTGC	1 cut(s)	1161
AccB1I	GGYRCC	2 cut(s)	676, 1099
AccBSI	CCGCTC	1 cut(s)	443
AccI	GTMKAC	1 cut(s)	1128
AccII	CGCG	1 cut(s)	714
AccIII	TCCGGA	1 cut(s)	878
AclI	AACGTT	1 cut(s)	95
AclWI	GGATC	2 cut(s)	1033, 1230
AcoI	YGGCCR	1 cut(s)	447
AcsI	RAATTY	2 cut(s)	898, 1179
AcuI	CTGAAG	3 cut(s)	1068, 1089, 1431
AfaI	GTAC	5 cut(s)	425, 704, 811, 1080, 1440
AfiI	CCNNNNNNNGG	3 cut(s)	328, 456, 1069
AgsI	TTSAA	5 cut(s)	28, 905, 1307, 1328, 1385
AjnI	CCWGG	2 cut(s)	991, 1338
Alw26I	GTCTC	4 cut(s)	11, 682, 880, 884
AlwI	GGATC	2 cut(s)	1033, 1230
AlwNI	CAGNNNCTG	1 cut(s)	1289
Aor13HI	TCCGGA	1 cut(s)	878
AoxI	GGCC	4 cut(s)	319, 447, 609, 1207
ApeKI	GCWGC	5 cut(s)	116, 755, 923, 926, 1289
ApoI	RAATTY	2 cut(s)	898, 1179
AspS9I	GGNCC	4 cut(s)	609, 747, 1207, 1238
AsuC2I	CCSGG	1 cut(s)	409
AsuHPI	GGTGA	4 cut(s)	304, 481, 1152, 1324
AvaII	GGWCC	2 cut(s)	747, 1238
BanI	GGYRCC	2 cut(s)	676, 1099
BbvI	GCAGC	5 cut(s)	103, 767, 910, 938, 1276
BccI	CCATC	3 cut(s)	98, 479, 1160
BcgI	CGANNNNNNTGC	2 cut(s)	278, 312
BciT130I	CCWGG	2 cut(s)	993, 1340
BcnI	CCSGG	1 cut(s)	409
BcoDI	GTCTC	4 cut(s)	11, 682, 880, 884
BfaI	CTAG	3 cut(s)	740, 794, 1347
BfmI	CTRYAG	2 cut(s)	645, 924
BfuAI	ACCTGC	1 cut(s)	1161
Bme1390I	CCNGG	3 cut(s)	409, 993, 1340
Bme18I	GGWCC	2 cut(s)	747, 1238
BmgT120I	GGNCC	4 cut(s)	609, 747, 1207, 1238
BmiI	GGNNCC	8 cut(s)	333, 342, 610, 678, 791, 990, 1101, 1239
BmrFI	CCNGG	3 cut(s)	409, 993, 1340
BpmI	CTGGAG	2 cut(s)	719, 1250
BpuEI	CTTGAG	4 cut(s)	496, 704, 790, 1478
BpuMI	CCSGG	1 cut(s)	409
BsaJI	CCNNGG	5 cut(s)	336, 504, 654, 1005, 1359
BsaWI	WCCGGW	1 cut(s)	878
Bsc4I	CCNNNNNNNGG	3 cut(s)	328, 456, 1069
Bse118I	RCCGGY	2 cut(s)	314, 449
Bse1I	ACTGG	3 cut(s)	74, 1233, 1372
Bse3DI	GCAATG	2 cut(s)	750, 1086
BseAI	TCCGGA	1 cut(s)	878
BseBI	CCWGG	2 cut(s)	993, 1340
BseDI	CCNNGG	5 cut(s)	336, 504, 654, 1005, 1359
BseLI	CCNNNNNNNGG	3 cut(s)	328, 456, 1069
BseMI	GCAATG	2 cut(s)	750, 1086
BseMII	CTCAG	2 cut(s)	428, 992
BseNI	ACTGG	3 cut(s)	74, 1233, 1372
BseRI	GAGGAG	2 cut(s)	61, 557
BseXI	GCAGC	5 cut(s)	103, 767, 910, 938, 1276
BseYI	CCCAGC	2 cut(s)	1399, 1424
BsgI	GTGCAG	3 cut(s)	539, 1131, 1302
Bsh1236I	CGCG	1 cut(s)	714
BshFI	GGCC	4 cut(s)	321, 449, 611, 1209
BshNI	GGYRCC	2 cut(s)	676, 1099
BsiSI	CCGG	6 cut(s)	315, 408, 450, 879, 930, 1210
BsiWI	CGTACG	1 cut(s)	423
BslFI	GGGAC	2 cut(s)	1251, 1382
BslI	CCNNNNNNNGG	3 cut(s)	328, 456, 1069
BsmAI	GTCTC	4 cut(s)	11, 682, 880, 884
BsmBI	CGTCTC	1 cut(s)	880
BsmFI	GGGAC	2 cut(s)	1251, 1382
BsmI	GAATGC	1 cut(s)	1156
BsnI	GGCC	4 cut(s)	321, 449, 611, 1209
Bsp13I	TCCGGA	1 cut(s)	878
Bsp143I	GATC	2 cut(s)	1038, 1222
Bsp19I	CCATGG	1 cut(s)	654
BspANI	GGCC	4 cut(s)	321, 449, 611, 1209
BspCNI	CTCAG	2 cut(s)	429, 991
BspEI	TCCGGA	1 cut(s)	878
BspFNI	CGCG	1 cut(s)	714
BspLI	GGNNCC	8 cut(s)	333, 342, 610, 678, 791, 990, 1101, 1239
BspMAI	CTGCAG	1 cut(s)	928
BspMI	ACCTGC	1 cut(s)	1161
BspPI	GGATC	2 cut(s)	1033, 1230
BspT107I	GGYRCC	2 cut(s)	676, 1099
BsrBI	CCGCTC	1 cut(s)	443
BsrDI	GCAATG	2 cut(s)	750, 1086
BsrFI	RCCGGY	2 cut(s)	314, 449
BsrI	ACTGG	3 cut(s)	74, 1233, 1372
BssAI	RCCGGY	2 cut(s)	314, 449
BssECI	CCNNGG	5 cut(s)	336, 504, 654, 1005, 1359
BssMI	GATC	2 cut(s)	1038, 1222
BssT1I	CCWWGG	4 cut(s)	504, 654, 1005, 1359
Bst2UI	CCWGG	2 cut(s)	993, 1340
Bst4CI	ACNGT	2 cut(s)	83, 340
Bst6I	CTCTTC	1 cut(s)	572
BstAPI	GCANNNNNTGC	1 cut(s)	1289
BstC8I	GCNNGC	2 cut(s)	451, 1093
BstDEI	CTNAG	3 cut(s)	437, 978, 1075
BstDSI	CCRYGG	2 cut(s)	336, 654
BstENI	CCTNNNNNAGG	1 cut(s)	1067
BstFNI	CGCG	1 cut(s)	714
BstKTI	GATC	2 cut(s)	1041, 1225
BstMAI	GTCTC	4 cut(s)	11, 682, 880, 884
BstMBI	GATC	2 cut(s)	1038, 1222
BstMWI	GCNNNNNNNGC	7 cut(s)	108, 480, 650, 923, 1097, 1289, 1409
BstNI	CCWGG	2 cut(s)	993, 1340
BstNSI	RCATGY	1 cut(s)	90
BstSCI	CCNGG	3 cut(s)	407, 991, 1338
BstSFI	CTRYAG	2 cut(s)	645, 924
BstUI	CGCG	1 cut(s)	714
BstV1I	GCAGC	5 cut(s)	103, 767, 910, 938, 1276
BsuRI	GGCC	4 cut(s)	321, 449, 611, 1209
BtgI	CCRYGG	2 cut(s)	336, 654
BtgZI	GCGATG	2 cut(s)	117, 498
BveI	ACCTGC	1 cut(s)	1161
Cac8I	GCNNGC	2 cut(s)	451, 1093
CaiI	CAGNNNCTG	1 cut(s)	1289
Cfr10I	RCCGGY	2 cut(s)	314, 449
Cfr13I	GGNCC	4 cut(s)	609, 747, 1207, 1238
CseI	GACGC	1 cut(s)	862
Csp6I	GTAC	5 cut(s)	424, 703, 810, 1079, 1439
CviAII	CATG	6 cut(s)	87, 613, 655, 1036, 1096, 1388
CviQI	GTAC	5 cut(s)	424, 703, 810, 1079, 1439
DdeI	CTNAG	3 cut(s)	437, 978, 1075
DpnI	GATC	2 cut(s)	1040, 1224
DpnII	GATC	2 cut(s)	1038, 1222
DraI	TTTAAA	1 cut(s)	823
EaeI	YGGCCR	1 cut(s)	447
Eam1104I	CTCTTC	1 cut(s)	572
EarI	CTCTTC	1 cut(s)	572
EciI	GGCGGA	3 cut(s)	121, 563, 569
Eco130I	CCWWGG	4 cut(s)	504, 654, 1005, 1359
Eco47I	GGWCC	2 cut(s)	747, 1238
Eco57I	CTGAAG	3 cut(s)	1068, 1089, 1431
EcoNI	CCTNNNNNAGG	1 cut(s)	1067
EcoRI	GAATTC	1 cut(s)	1179
EcoRII	CCWGG	2 cut(s)	991, 1338
EcoT14I	CCWWGG	4 cut(s)	504, 654, 1005, 1359
ErhI	CCWWGG	4 cut(s)	504, 654, 1005, 1359
Esp3I	CGTCTC	1 cut(s)	880
FaeI	CATG	6 cut(s)	90, 616, 658, 1039, 1099, 1391
FaqI	GGGAC	2 cut(s)	1251, 1382
FatI	CATG	6 cut(s)	86, 612, 654, 1035, 1095, 1387
FauI	CCCGC	1 cut(s)	218
FblI	GTMKAC	1 cut(s)	1128
FspBI	CTAG	3 cut(s)	740, 794, 1347
GsaI	CCCAGC	2 cut(s)	1403, 1428
GsuI	CTGGAG	2 cut(s)	719, 1250
HaeIII	GGCC	4 cut(s)	321, 449, 611, 1209
HapII	CCGG	6 cut(s)	315, 408, 450, 879, 930, 1210
HgaI	GACGC	1 cut(s)	862
Hin1II	CATG	6 cut(s)	90, 616, 658, 1039, 1099, 1391
HinfI	GANTC	5 cut(s)	128, 500, 970, 976, 1243
HpaII	CCGG	6 cut(s)	315, 408, 450, 879, 930, 1210
HphI	GGTGA	4 cut(s)	304, 481, 1152, 1324
Hpy166II	GTNNAC	1 cut(s)	1129
Hpy188I	TCNGA	5 cut(s)	222, 378, 541, 975, 1248
Hpy188III	TCNNGA	5 cut(s)	497, 663, 683, 879, 962
Hpy8I	GTNNAC	1 cut(s)	1129
Hpy99I	CGWCG	1 cut(s)	368
HpyAV	CCTTC	6 cut(s)	162, 778, 1043, 1113, 1164, 1455
HpyCH4III	ACNGT	2 cut(s)	83, 340
HpyCH4IV	ACGT	1 cut(s)	95
HpyCH4V	TGCA	9 cut(s)	86, 520, 755, 926, 1091, 1112, 1156, 1283, 1412
HpyF10VI	GCNNNNNNNGC	7 cut(s)	108, 480, 650, 923, 1097, 1289, 1409
HpyF3I	CTNAG	3 cut(s)	437, 978, 1075
HpySE526I	ACGT	1 cut(s)	95
Hsp92II	CATG	6 cut(s)	90, 616, 658, 1039, 1099, 1391
Kpn2I	TCCGGA	1 cut(s)	878
KroI	GCCGGC	1 cut(s)	449
KroNI	GCCGGC	1 cut(s)	451
Kzo9I	GATC	2 cut(s)	1038, 1222
LmnI	GCTCC	3 cut(s)	820, 994, 1262
Lsp1109I	GCAGC	5 cut(s)	103, 767, 910, 938, 1276
MaeI	CTAG	3 cut(s)	740, 794, 1347
MaeII	ACGT	1 cut(s)	95
MaeIII	GTNAC	3 cut(s)	565, 1431, 1460
MalI	GATC	2 cut(s)	1040, 1224
MbiI	CCGCTC	1 cut(s)	443
MboI	GATC	2 cut(s)	1038, 1222
MboII	GAAGA	5 cut(s)	147, 391, 589, 797, 1495
MfeI	CAATTG	1 cut(s)	863
MluCI	AATT	8 cut(s)	22, 346, 358, 832, 863, 898, 933, 1179
MlyI	GAGTC	2 cut(s)	509, 970
MroI	TCCGGA	1 cut(s)	878
MroNI	GCCGGC	1 cut(s)	449
MseI	TTAA	4 cut(s)	92, 822, 1139, 1374
MslI	CAYNNNNRTG	1 cut(s)	1392
MspI	CCGG	6 cut(s)	315, 408, 450, 879, 930, 1210
MspR9I	CCNGG	3 cut(s)	409, 993, 1340
MunI	CAATTG	1 cut(s)	863
Mva1269I	GAATGC	1 cut(s)	1156
MvaI	CCWGG	2 cut(s)	993, 1340
MvnI	CGCG	1 cut(s)	714
MwoI	GCNNNNNNNGC	7 cut(s)	108, 480, 650, 923, 1097, 1289, 1409
NaeI	GCCGGC	1 cut(s)	451
NciI	CCSGG	1 cut(s)	409
NcoI	CCATGG	1 cut(s)	654
NdeII	GATC	2 cut(s)	1038, 1222
NgoMIV	GCCGGC	1 cut(s)	449
NlaIII	CATG	6 cut(s)	90, 616, 658, 1039, 1099, 1391
NlaIV	GGNNCC	8 cut(s)	333, 342, 610, 678, 791, 990, 1101, 1239
NspI	RCATGY	1 cut(s)	90
PcsI	WCGNNNNNNNCGW	1 cut(s)	419
PctI	GAATGC	1 cut(s)	1156
PdiI	GCCGGC	1 cut(s)	451
PfeI	GAWTC	3 cut(s)	128, 970, 1243
Pfl23II	CGTACG	1 cut(s)	423
PfoI	TCCNGGA	1 cut(s)	1338
PleI	GAGTC	2 cut(s)	508, 970
PpsI	GAGTC	2 cut(s)	508, 970
PsiI	TTATAA	1 cut(s)	1068
Psp1406I	AACGTT	1 cut(s)	95
Psp6I	CCWGG	2 cut(s)	991, 1338
PspFI	CCCAGC	2 cut(s)	1399, 1424
PspGI	CCWGG	2 cut(s)	991, 1338
PspLI	CGTACG	1 cut(s)	423
PspN4I	GGNNCC	8 cut(s)	333, 342, 610, 678, 791, 990, 1101, 1239
PspPI	GGNCC	4 cut(s)	609, 747, 1207, 1238
PstI	CTGCAG	1 cut(s)	928
PstNI	CAGNNNCTG	1 cut(s)	1289
RsaI	GTAC	5 cut(s)	425, 704, 811, 1080, 1440
RsaNI	GTAC	5 cut(s)	424, 703, 810, 1079, 1439
RseI	CAYNNNNRTG	1 cut(s)	1392
SaqAI	TTAA	4 cut(s)	92, 822, 1139, 1374
Sau3AI	GATC	2 cut(s)	1038, 1222
Sau96I	GGNCC	4 cut(s)	609, 747, 1207, 1238
SchI	GAGTC	2 cut(s)	509, 970
ScrFI	CCNGG	3 cut(s)	409, 993, 1340
SfcI	CTRYAG	2 cut(s)	645, 924
SgrAI	CRCCGGYG	1 cut(s)	314
SinI	GGWCC	2 cut(s)	747, 1238
SmiMI	CAYNNNNRTG	1 cut(s)	1392
SmlI	CTYRAG	4 cut(s)	475, 683, 769, 1493
SmoI	CTYRAG	4 cut(s)	475, 683, 769, 1493
Sse9I	AATT	8 cut(s)	22, 346, 358, 832, 863, 898, 933, 1179
SspI	AATATT	1 cut(s)	802
SspMI	CTAG	3 cut(s)	740, 794, 1347
StyD4I	CCNGG	3 cut(s)	407, 991, 1338
StyI	CCWWGG	4 cut(s)	504, 654, 1005, 1359
TaaI	ACNGT	2 cut(s)	83, 340
TaiI	ACGT	1 cut(s)	98
TaqII	GACCGA	1 cut(s)	1255
TasI	AATT	8 cut(s)	22, 346, 358, 832, 863, 898, 933, 1179
TatI	WGTACW	1 cut(s)	702
TauI	GCSGC	6 cut(s)	122, 321, 398, 653, 717, 1454
TfiI	GAWTC	3 cut(s)	128, 970, 1243
Tru1I	TTAA	4 cut(s)	92, 822, 1139, 1374
Tru9I	TTAA	4 cut(s)	92, 822, 1139, 1374
TseI	GCWGC	5 cut(s)	116, 755, 923, 926, 1289
TspDTI	ATGAA	3 cut(s)	298, 629, 1496
TspGWI	ACGGA	5 cut(s)	46, 352, 378, 540, 1290
VpaK11BI	GGWCC	2 cut(s)	747, 1238
XagI	CCTNNNNNAGG	1 cut(s)	1067
XapI	RAATTY	2 cut(s)	898, 1179
XceI	RCATGY	1 cut(s)	90
XcmI	CCANNNNNNNNNTGG	3 cut(s)	511, 670, 1093
XmiI	GTMKAC	1 cut(s)	1128
XspI	CTAG	3 cut(s)	740, 794, 1347

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.