Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004132.1

Orthogroup ID

OG0012801

Physical Location & Seq

Genomic Coordinates Forward (+)

17273 .. 21200

Gene Structure 3928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004132.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

atgcccccctcggagctctcttgctctgcaaaccccaacctccacgactcaaactccggcctattcgtcaccggcggtttgttcctggagcccaccgtccccaattcgctgctcaattccgtctcgttcagaaagacctcaaacgccgtcgttgccgggtcgggttatgcgtgccggttgcggctggcgggtggcggtggcggtgggtttttgtcggtgagtttgagcagcgatggggttgttcgggagtcgaaaggggggtgtttggtgcagaacggcgaggagggctcggaggaagcagcggtggtggtggttcaagaagagaagagagagaaagttgggattaggagaggaagggccatgaacaccaccaagcatttgtgggctggtgccatagccgccatggtttccagaacgtttgttgcgccacttgagagactaaagctggagtatatagttcgtggtgaacggaggcatttgtttgagcttgttaagagcatagcggtttctcagggcgtgagggggttttggaaggggaacttagtcaatattcttcgcacagctccatttaaagcaatcaatttttatgcatatgatacttacagaaaacaattgcttagattttctggaaataaggagactacaaattttgagagattcgttgctggtgctgcagctggaattactgctaccatactctgcttacctcttgacacgattcgaactaagctagtggctccgggtggggaatccttgggcggtgtcattggtgctttccgccacatgatccagactgaagggttcttttccctttataagggcctagtaccatccatagcaagcatggcaccttcaggtgcagttttctatggtgtctatgacatattaaaatcagcttacttgcattcaccgaatggaaggaaaagaattcagaaaatgaaccagcacggtgagcacctgaatgcttttgatcaactggagttgggaccggttaggacattactctatggagctattgctggtgcctgtgcagaagctgccacttatccatttgaagttgtgaggagacagcttcaattgcaatcccaggctactaaaatgagcaccttggcgacttgtattaagatagttgaacgaggaggggtcccagcactctatgcaggacttgttcccagcttgttacaggtacttccttcggctgcaataagttactttgtctatgagttcatgaaaattgttctcaaggtagaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0006810 GO:0006839 GO:0008150 GO:0009507 GO:0009526 GO:0009536 GO:0009941 GO:0016020 GO:0016021 GO:0019866 GO:0022857 GO:0031090 GO:0031224 GO:0031966 GO:0031967 GO:0031975 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Mito_carr

Protein Analysis

417

Amino Acids

45.02

Weight (kDa)

9.57

Isoelectric Point (pI)

46.8

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012801)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78180
fragaria_vesca	FvH4_5g37340 FvH4_5g37340
malus_domestica	MD08G1182700.v1.1 MD15G1368800.v1.1
prunus_persica	Prupe.1G516900_v2.0.a1
pyrus_communis	pycom08g15650 pycom15g33050
rosa_chinensis	RchiOBHm_Chr7g0238991
rosa_laevigata	RLG00000000792
rosa_multiflora	Rmu_sc0004132.1_g000003
rosa_roxburghii	Rroxscaffold_3G00221400
rosa_rugosa	Rorug07G0324300
rosa_samantha	Rh7AG479300 Rh7BG451900 Rh7CG496500 Rh7DG464000
rosa_wichuraiana	Rw7G040010

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	816
AccB1I	GGYRCC	3 cut(s)	389, 847, 1022
AclI	AACGTT	1 cut(s)	416
AclWI	GGATC	1 cut(s)	781
AcsI	RAATTY	2 cut(s)	646, 927
AcuI	CTGAAG	2 cut(s)	816, 837
AfaI	GTAC	2 cut(s)	828, 1188
AfiI	CCNNNNNNNGG	1 cut(s)	817
AgeI	ACCGGT	1 cut(s)	988
AgsI	TTSAA	4 cut(s)	317, 1055, 1076, 1133
AjnI	CCWGG	2 cut(s)	84, 1086
Alw21I	GWGCWC	3 cut(s)	18, 957, 1106
Alw26I	GTCTC	4 cut(s)	127, 430, 632, 1060
AlwI	GGATC	1 cut(s)	781
AlwNI	CAGNNNCTG	1 cut(s)	1037
AoxI	GGCC	3 cut(s)	58, 357, 820
ApeKI	GCWGC	7 cut(s)	109, 228, 299, 671, 674, 1037, 1199
ApoI	RAATTY	2 cut(s)	646, 927
AsiGI	ACCGGT	1 cut(s)	988
AspLEI	GCGC	1 cut(s)	427
AspS9I	GGNCC	4 cut(s)	357, 820, 986, 1144
AsuC2I	CCSGG	2 cut(s)	157, 741
AsuHPI	GGTGA	5 cut(s)	61, 229, 476, 900, 962
AsuII	TTCGAA	1 cut(s)	721
AvaII	GGWCC	2 cut(s)	986, 1144
BanI	GGYRCC	3 cut(s)	389, 847, 1022
BanII	GRGCYC	3 cut(s)	18, 93, 290
Bbv12I	GWGCWC	3 cut(s)	18, 957, 1106
BbvI	GCAGC	7 cut(s)	96, 240, 311, 658, 686, 1024, 1186
BccI	CCATC	2 cut(s)	227, 838
BceAI	ACGGC	2 cut(s)	131, 292
BciT130I	CCWGG	2 cut(s)	86, 1088
BclI	TGATCA	1 cut(s)	970
BcnI	CCSGG	2 cut(s)	157, 741
BcoDI	GTCTC	4 cut(s)	127, 430, 632, 1060
BfaI	CTAG	2 cut(s)	731, 824
BfmI	CTRYAG	1 cut(s)	672
BisI	GCNGC	9 cut(s)	110, 182, 229, 300, 399, 672, 675, 1038, 1200
BlsI	GCNGC	9 cut(s)	111, 183, 230, 301, 400, 673, 676, 1039, 1201
Bme1390I	CCNGG	4 cut(s)	86, 157, 741, 1088
Bme18I	GGWCC	2 cut(s)	986, 1144
BmgT120I	GGNCC	4 cut(s)	357, 820, 986, 1144
BmiI	GGNNCC	8 cut(s)	90, 391, 738, 849, 987, 1024, 1145, 1146
BmrFI	CCNGG	4 cut(s)	86, 157, 741, 1088
BplI	GAGNNNNNCTC	2 cut(s)	272, 304
BpmI	CTGGAG	3 cut(s)	107, 467, 998
Bpu14I	TTCGAA	1 cut(s)	721
BpuEI	CTTGAG	2 cut(s)	452, 1226
BpuMI	CCSGG	2 cut(s)	157, 741
BsaJI	CCNNGG	5 cut(s)	9, 402, 753, 1086, 1107
BsaWI	WCCGGW	1 cut(s)	988
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	1 cut(s)	817
Bse118I	RCCGGY	3 cut(s)	71, 174, 988
Bse1I	ACTGG	1 cut(s)	981
BseBI	CCWGG	2 cut(s)	86, 1088
BseDI	CCNNGG	5 cut(s)	9, 402, 753, 1086, 1107
BseGI	GGATG	1 cut(s)	830
BseLI	CCNNNNNNNGG	1 cut(s)	817
BseMII	CTCAG	1 cut(s)	524
BseNI	ACTGG	1 cut(s)	981
BseRI	GAGGAG	3 cut(s)	296, 1078, 1152
BseXI	GCAGC	7 cut(s)	96, 240, 311, 658, 686, 1024, 1186
BseYI	CCCAGC	2 cut(s)	1147, 1172
BsgI	GTGCAG	3 cut(s)	290, 879, 1050
BshFI	GGCC	3 cut(s)	60, 359, 822
BshNI	GGYRCC	3 cut(s)	389, 847, 1022
BshTI	ACCGGT	1 cut(s)	988
BsiHKAI	GWGCWC	3 cut(s)	18, 957, 1106
BsiSI	CCGG	6 cut(s)	57, 72, 156, 175, 740, 989
BslFI	GGGAC	3 cut(s)	83, 999, 1130
BslI	CCNNNNNNNGG	1 cut(s)	817
BsmAI	GTCTC	4 cut(s)	127, 430, 632, 1060
BsmBI	CGTCTC	1 cut(s)	127
BsmFI	GGGAC	3 cut(s)	83, 999, 1130
BsmI	GAATGC	2 cut(s)	904, 967
BsnI	GGCC	3 cut(s)	60, 359, 822
Bsp119I	TTCGAA	1 cut(s)	721
Bsp1286I	GDGCHC	5 cut(s)	18, 93, 290, 957, 1106
Bsp143I	GATC	2 cut(s)	786, 970
Bsp19I	CCATGG	1 cut(s)	402
BspANI	GGCC	3 cut(s)	60, 359, 822
BspCNI	CTCAG	1 cut(s)	523
BspHI	TCATGA	1 cut(s)	1227
BspLI	GGNNCC	8 cut(s)	90, 391, 738, 849, 987, 1024, 1145, 1146
BspMAI	CTGCAG	1 cut(s)	676
BspPI	GGATC	1 cut(s)	781
BspT104I	TTCGAA	1 cut(s)	721
BspT107I	GGYRCC	3 cut(s)	389, 847, 1022
BsrFI	RCCGGY	3 cut(s)	71, 174, 988
BsrI	ACTGG	1 cut(s)	981
BssAI	RCCGGY	3 cut(s)	71, 174, 988
BssECI	CCNNGG	5 cut(s)	9, 402, 753, 1086, 1107
BssMI	GATC	2 cut(s)	786, 970
BssT1I	CCWWGG	3 cut(s)	402, 753, 1107
Bst2UI	CCWGG	2 cut(s)	86, 1088
Bst4CI	ACNGT	2 cut(s)	97, 950
Bst6I	CTCTTC	2 cut(s)	315, 320
BstAPI	GCANNNNNTGC	2 cut(s)	1037, 1157
BstBI	TTCGAA	1 cut(s)	721
BstC8I	GCNNGC	3 cut(s)	172, 186, 841
BstDEI	CTNAG	4 cut(s)	510, 541, 617, 726
BstDSI	CCRYGG	1 cut(s)	402
BstENI	CCTNNNNNAGG	1 cut(s)	815
BstF5I	GGATG	1 cut(s)	830
BstHHI	GCGC	1 cut(s)	427
BstKTI	GATC	2 cut(s)	789, 973
BstMAI	GTCTC	4 cut(s)	127, 430, 632, 1060
BstMBI	GATC	2 cut(s)	786, 970
BstMWI	GCNNNNNNNGC	9 cut(s)	152, 285, 398, 671, 845, 952, 1037, 1078, 1157
BstNI	CCWGG	2 cut(s)	86, 1088
BstSCI	CCNGG	4 cut(s)	84, 155, 739, 1086
BstSFI	CTRYAG	1 cut(s)	672
BstV1I	GCAGC	7 cut(s)	96, 240, 311, 658, 686, 1024, 1186
BsuRI	GGCC	3 cut(s)	60, 359, 822
BtgI	CCRYGG	1 cut(s)	402
BtgZI	GCGATG	1 cut(s)	246
BtsCI	GGATG	1 cut(s)	830
Cac8I	GCNNGC	3 cut(s)	172, 186, 841
CaiI	CAGNNNCTG	1 cut(s)	1037
CciI	TCATGA	1 cut(s)	1227
CfoI	GCGC	1 cut(s)	427
Cfr10I	RCCGGY	3 cut(s)	71, 174, 988
Cfr13I	GGNCC	4 cut(s)	357, 820, 986, 1144
Csp6I	GTAC	2 cut(s)	827, 1187
CspAI	ACCGGT	1 cut(s)	988
CviAII	CATG	5 cut(s)	361, 403, 784, 844, 1228
CviQI	GTAC	2 cut(s)	827, 1187
DdeI	CTNAG	4 cut(s)	510, 541, 617, 726
DpnI	GATC	2 cut(s)	788, 972
DpnII	GATC	2 cut(s)	786, 970
DraI	TTTAAA	1 cut(s)	571
Eam1104I	CTCTTC	2 cut(s)	315, 320
EarI	CTCTTC	2 cut(s)	315, 320
EciI	GGCGGA	1 cut(s)	767
Ecl136II	GAGCTC	1 cut(s)	16
Eco130I	CCWWGG	3 cut(s)	402, 753, 1107
Eco24I	GRGCYC	3 cut(s)	18, 93, 290
Eco47I	GGWCC	2 cut(s)	986, 1144
Eco53kI	GAGCTC	1 cut(s)	16
Eco57I	CTGAAG	2 cut(s)	816, 837
EcoICRI	GAGCTC	1 cut(s)	16
EcoNI	CCTNNNNNAGG	1 cut(s)	815
EcoO109I	RGGNCCY	2 cut(s)	820, 1144
EcoRI	GAATTC	1 cut(s)	927
EcoRII	CCWGG	2 cut(s)	84, 1086
EcoT14I	CCWWGG	3 cut(s)	402, 753, 1107
EcoT22I	ATGCAT	1 cut(s)	592
EcoT38I	GRGCYC	3 cut(s)	18, 93, 290
ErhI	CCWWGG	3 cut(s)	402, 753, 1107
Esp3I	CGTCTC	1 cut(s)	127
FaeI	CATG	5 cut(s)	364, 406, 787, 847, 1231
FalI	AAGNNNNNCTT	2 cut(s)	524, 556
FaqI	GGGAC	3 cut(s)	83, 999, 1130
FatI	CATG	5 cut(s)	360, 402, 783, 843, 1227
FauI	CCCGC	1 cut(s)	181
FauNDI	CATATG	1 cut(s)	592
FbaI	TGATCA	1 cut(s)	970
Fnu4HI	GCNGC	9 cut(s)	110, 182, 229, 300, 399, 672, 675, 1038, 1200
FokI	GGATG	1 cut(s)	817
FriOI	GRGCYC	3 cut(s)	18, 93, 290
Fsp4HI	GCNGC	9 cut(s)	110, 182, 229, 300, 399, 672, 675, 1038, 1200
FspBI	CTAG	2 cut(s)	731, 824
GlaI	GCGC	1 cut(s)	426
GluI	GCNGC	9 cut(s)	110, 182, 229, 300, 399, 672, 675, 1038, 1200
GsaI	CCCAGC	2 cut(s)	1151, 1176
GsuI	CTGGAG	3 cut(s)	107, 467, 998
HaeIII	GGCC	3 cut(s)	60, 359, 822
HapII	CCGG	6 cut(s)	57, 72, 156, 175, 740, 989
HhaI	GCGC	1 cut(s)	427
Hin1II	CATG	5 cut(s)	364, 406, 787, 847, 1231
Hin6I	GCGC	1 cut(s)	425
HinP1I	GCGC	1 cut(s)	425
HinfI	GANTC	5 cut(s)	47, 248, 657, 718, 749
HpaII	CCGG	6 cut(s)	57, 72, 156, 175, 740, 989
HphI	GGTGA	5 cut(s)	61, 229, 476, 900, 962
Hpy166II	GTNNAC	1 cut(s)	467
Hpy188I	TCNGA	4 cut(s)	13, 131, 292, 933
Hpy188III	TCNNGA	7 cut(s)	245, 317, 411, 627, 710, 790, 1228
Hpy8I	GTNNAC	1 cut(s)	467
Hpy99I	CGWCG	1 cut(s)	152
HpyAV	CCTTC	6 cut(s)	348, 526, 791, 861, 912, 1203
HpyCH4III	ACNGT	2 cut(s)	97, 950
HpyCH4IV	ACGT	1 cut(s)	416
HpyF10VI	GCNNNNNNNGC	9 cut(s)	152, 285, 398, 671, 845, 952, 1037, 1078, 1157
HpyF3I	CTNAG	4 cut(s)	510, 541, 617, 726
HpySE526I	ACGT	1 cut(s)	416
Hsp92II	CATG	5 cut(s)	364, 406, 787, 847, 1231
HspAI	GCGC	1 cut(s)	425
KflI	GGGWCCC	1 cut(s)	1144
Ksp22I	TGATCA	1 cut(s)	970
Kzo9I	GATC	2 cut(s)	786, 970
LmnI	GCTCC	5 cut(s)	13, 88, 568, 742, 1010
Lsp1109I	GCAGC	7 cut(s)	96, 240, 311, 658, 686, 1024, 1186
MaeI	CTAG	2 cut(s)	731, 824
MaeII	ACGT	1 cut(s)	416
MaeIII	GTNAC	3 cut(s)	67, 1179, 1208
MalI	GATC	2 cut(s)	788, 972
MboI	GATC	2 cut(s)	786, 970
MboII	GAAGA	3 cut(s)	332, 337, 545
MfeI	CAATTG	2 cut(s)	611, 1076
MhlI	GDGCHC	5 cut(s)	18, 93, 290, 957, 1106
MluCI	AATT	9 cut(s)	103, 115, 580, 611, 646, 681, 927, 1076, 1233
MlyI	GAGTC	2 cut(s)	41, 257
Mph1103I	ATGCAT	1 cut(s)	592
MseI	TTAA	4 cut(s)	492, 570, 887, 1122
MslI	CAYNNNNRTG	1 cut(s)	960
MspA1I	CMGCKG	2 cut(s)	302, 677
MspI	CCGG	6 cut(s)	57, 72, 156, 175, 740, 989
MspR9I	CCNGG	4 cut(s)	86, 157, 741, 1088
MunI	CAATTG	2 cut(s)	611, 1076
Mva1269I	GAATGC	2 cut(s)	904, 967
MvaI	CCWGG	2 cut(s)	86, 1088
MwoI	GCNNNNNNNGC	9 cut(s)	152, 285, 398, 671, 845, 952, 1037, 1078, 1157
NciI	CCSGG	2 cut(s)	157, 741
NcoI	CCATGG	1 cut(s)	402
NdeI	CATATG	1 cut(s)	592
NdeII	GATC	2 cut(s)	786, 970
NlaIII	CATG	5 cut(s)	364, 406, 787, 847, 1231
NlaIV	GGNNCC	8 cut(s)	90, 391, 738, 849, 987, 1024, 1145, 1146
NmuCI	GTSAC	1 cut(s)	67
NsiI	ATGCAT	1 cut(s)	592
NspV	TTCGAA	1 cut(s)	721
PagI	TCATGA	1 cut(s)	1227
PcsI	WCGNNNNNNNCGW	1 cut(s)	167
PctI	GAATGC	2 cut(s)	904, 967
PfeI	GAWTC	3 cut(s)	657, 718, 749
PfoI	TCCNGGA	1 cut(s)	84
PinAI	ACCGGT	1 cut(s)	988
PkrI	GCNGC	9 cut(s)	111, 183, 230, 301, 400, 673, 676, 1039, 1201
PleI	GAGTC	2 cut(s)	41, 256
PpsI	GAGTC	2 cut(s)	41, 256
PpuMI	RGGWCCY	1 cut(s)	1144
PsiI	TTATAA	1 cut(s)	816
Psp124BI	GAGCTC	1 cut(s)	18
Psp1406I	AACGTT	1 cut(s)	416
Psp5II	RGGWCCY	1 cut(s)	1144
Psp6I	CCWGG	2 cut(s)	84, 1086
PspFI	CCCAGC	2 cut(s)	1147, 1172
PspGI	CCWGG	2 cut(s)	84, 1086
PspN4I	GGNNCC	8 cut(s)	90, 391, 738, 849, 987, 1024, 1145, 1146
PspPI	GGNCC	4 cut(s)	357, 820, 986, 1144
PspPPI	RGGWCCY	1 cut(s)	1144
PstI	CTGCAG	1 cut(s)	676
PstNI	CAGNNNCTG	1 cut(s)	1037
PvuII	CAGCTG	1 cut(s)	677
RsaI	GTAC	2 cut(s)	828, 1188
RsaNI	GTAC	2 cut(s)	827, 1187
RseI	CAYNNNNRTG	1 cut(s)	960
SacI	GAGCTC	1 cut(s)	18
SaqAI	TTAA	4 cut(s)	492, 570, 887, 1122
SatI	GCNGC	9 cut(s)	110, 182, 229, 300, 399, 672, 675, 1038, 1200
Sau3AI	GATC	2 cut(s)	786, 970
Sau96I	GGNCC	4 cut(s)	357, 820, 986, 1144
SchI	GAGTC	2 cut(s)	41, 257
ScrFI	CCNGG	4 cut(s)	86, 157, 741, 1088
SduI	GDGCHC	5 cut(s)	18, 93, 290, 957, 1106
SfcI	CTRYAG	1 cut(s)	672
SfuI	TTCGAA	1 cut(s)	721
SgrAI	CRCCGGYG	1 cut(s)	71
SinI	GGWCC	2 cut(s)	986, 1144
SmiMI	CAYNNNNRTG	1 cut(s)	960
SmlI	CTYRAG	2 cut(s)	431, 1241
SmoI	CTYRAG	2 cut(s)	431, 1241
Sse9I	AATT	9 cut(s)	103, 115, 580, 611, 646, 681, 927, 1076, 1233
SspI	AATATT	1 cut(s)	550
SspMI	CTAG	2 cut(s)	731, 824
SstI	GAGCTC	1 cut(s)	18
StyD4I	CCNGG	4 cut(s)	84, 155, 739, 1086
StyI	CCWWGG	3 cut(s)	402, 753, 1107
TaaI	ACNGT	2 cut(s)	97, 950
TaiI	ACGT	1 cut(s)	419
TaqI	TCGA	2 cut(s)	251, 721
TasI	AATT	9 cut(s)	103, 115, 580, 611, 646, 681, 927, 1076, 1233
TauI	GCSGC	2 cut(s)	184, 401
TfiI	GAWTC	3 cut(s)	657, 718, 749
Tru1I	TTAA	4 cut(s)	492, 570, 887, 1122
Tru9I	TTAA	4 cut(s)	492, 570, 887, 1122
TseFI	GTSAC	1 cut(s)	67
TseI	GCWGC	7 cut(s)	109, 228, 299, 671, 674, 1037, 1199
Tsp45I	GTSAC	1 cut(s)	67
TspDTI	ATGAA	4 cut(s)	377, 953, 1216, 1244
TspGWI	ACGGA	2 cut(s)	109, 484
VpaK11BI	GGWCC	2 cut(s)	986, 1144
XagI	CCTNNNNNAGG	1 cut(s)	815
XapI	RAATTY	2 cut(s)	646, 927
XcmI	CCANNNNNNNNNTGG	2 cut(s)	400, 841
XspI	CTAG	2 cut(s)	731, 824
Zsp2I	ATGCAT	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.