AT1G78520

X8 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0012725
Physical Location & Seq
Reverse (-)
29537806 .. 29538712
907 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G78520.1

Sequence Viewer

Length: 348 bp
ATGGCTAAAGCATGGATCTGCCTTTCCTTCCTCATCTTCCTCTACCTTGTCTCAGAACGAAACTTCATCAACGTCAACGCAGAGACCAAGACTTGGTGTGTGGCTAAACCTTCTTCCGATCAAGTAGCACTTCAAGATAACATAAACTTCGCATGTTCTCATGTTGATTGTCGTGTTCTTTTGAGTGGATGTCCATGTTACTCCCCTAGTAACCTCATCAACCATGCATCTATCGCCATGAATCTTTATTACCAAGCCAATGGAAGAAACTATTGGAACTGCAATTTCAAGAACTCCGGACTCATTACCATAACTAATCCGAGCTATGGAAACTGCTACTATGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

115

Amino Acids

13.04

Weight (kDa)

7.52

Isoelectric Point (pI)

27.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 31 - 100 2.3e-19 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012725)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78520 AT2G43670
fragaria_vesca FvH4_3g17340
malus_domestica MD11G1273700.v1.1
prunus_persica Prupe.4G153400_v2.0.a1
pyrus_communis pycom11g24140
rosa_chinensis RchiOBHm_Chr5g0028861
rosa_laevigata RLG00000033120
rosa_multiflora Rmu_sc0005178.1_g000012
rosa_roxburghii Rroxscaffold_1G00051020
rosa_rugosa Rorug05G0110800 Rorug05G0110900 Rorug05G0111000
rosa_samantha Rh5AG203300 Rh5BG201400 Rh5CG222400 Rh5DG205000
rosa_wichuraiana Rw5G018390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 93
AccIII TCCGGA 1 cut(s) 296
AclWI GGATC 1 cut(s) 23
AfiI CCNNNNNNNGG 2 cut(s) 93, 326
AgsI TTSAA 2 cut(s) 134, 289
AjuI GAANNNNNNNTTGG 2 cut(s) 256, 288
AluBI AGCT 1 cut(s) 324
AluI AGCT 1 cut(s) 324
Alw26I GTCTC 2 cut(s) 55, 77
AlwI GGATC 1 cut(s) 23
Aor13HI TCCGGA 1 cut(s) 296
BcoDI GTCTC 2 cut(s) 55, 77
BfaI CTAG 1 cut(s) 207
BmsI GCATC 1 cut(s) 236
BsaI GGTCTC 1 cut(s) 77
BsaWI WCCGGW 1 cut(s) 296
Bsc4I CCNNNNNNNGG 2 cut(s) 93, 326
BseAI TCCGGA 1 cut(s) 296
BseGI GGATG 1 cut(s) 194
BseLI CCNNNNNNNGG 2 cut(s) 93, 326
BseMII CTCAG 1 cut(s) 66
BsiSI CCGG 1 cut(s) 297
BslI CCNNNNNNNGG 2 cut(s) 93, 326
BsmAI GTCTC 2 cut(s) 55, 77
Bso31I GGTCTC 1 cut(s) 77
Bsp13I TCCGGA 1 cut(s) 296
Bsp143I GATC 2 cut(s) 15, 118
BspCNI CTCAG 1 cut(s) 65
BspEI TCCGGA 1 cut(s) 296
BspPI GGATC 1 cut(s) 23
BspTNI GGTCTC 1 cut(s) 77
BssMI GATC 2 cut(s) 15, 118
BstDEI CTNAG 1 cut(s) 52
BstF5I GGATG 1 cut(s) 194
BstKTI GATC 2 cut(s) 18, 121
BstMAI GTCTC 2 cut(s) 55, 77
BstMBI GATC 2 cut(s) 15, 118
BstMWI GCNNNNNNNGC 1 cut(s) 233
BstNSI RCATGY 1 cut(s) 156
BstX2I RGATCY 1 cut(s) 15
BstXI CCANNNNNNTGG 1 cut(s) 260
BstYI RGATCY 1 cut(s) 15
BtsCI GGATG 1 cut(s) 194
CviAII CATG 6 cut(s) 12, 153, 161, 195, 224, 238
CviJI RGCY 4 cut(s) 5, 104, 257, 324
CviKI_1 RGCY 4 cut(s) 5, 104, 257, 324
DdeI CTNAG 1 cut(s) 52
DpnI GATC 2 cut(s) 17, 120
DpnII GATC 2 cut(s) 15, 118
Eco31I GGTCTC 1 cut(s) 77
EcoT22I ATGCAT 1 cut(s) 229
FaeI CATG 6 cut(s) 15, 156, 164, 198, 227, 241
FalI AAGNNNNNCTT 2 cut(s) 114, 146
FatI CATG 6 cut(s) 11, 152, 160, 194, 223, 237
FokI GGATG 1 cut(s) 201
FspBI CTAG 1 cut(s) 207
HapII CCGG 1 cut(s) 297
Hin1II CATG 6 cut(s) 15, 156, 164, 198, 227, 241
HincII GTYRAC 1 cut(s) 76
HindII GTYRAC 1 cut(s) 76
HinfI GANTC 2 cut(s) 241, 300
HpaII CCGG 1 cut(s) 297
Hpy166II GTNNAC 1 cut(s) 76
Hpy188I TCNGA 3 cut(s) 55, 118, 321
Hpy188III TCNNGA 3 cut(s) 134, 289, 297
Hpy8I GTNNAC 1 cut(s) 76
HpyAV CCTTC 2 cut(s) 37, 120
HpyCH4IV ACGT 1 cut(s) 72
HpyCH4V TGCA 2 cut(s) 227, 282
HpyF10VI GCNNNNNNNGC 1 cut(s) 233
HpyF3I CTNAG 1 cut(s) 52
HpySE526I ACGT 1 cut(s) 72
Hsp92II CATG 6 cut(s) 15, 156, 164, 198, 227, 241
Kpn2I TCCGGA 1 cut(s) 296
Kzo9I GATC 2 cut(s) 15, 118
LpnPI CCDG 1 cut(s) 310
LweI GCATC 1 cut(s) 236
MaeI CTAG 1 cut(s) 207
MaeII ACGT 1 cut(s) 72
MaeIII GTNAC 2 cut(s) 197, 209
MalI GATC 2 cut(s) 17, 120
MboI GATC 2 cut(s) 15, 118
MboII GAAGA 3 cut(s) 28, 105, 276
MflI RGATCY 1 cut(s) 15
MluCI AATT 1 cut(s) 283
MlyI GAGTC 1 cut(s) 294
MnlI CCTC 3 cut(s) 41, 50, 224
Mph1103I ATGCAT 1 cut(s) 229
MroI TCCGGA 1 cut(s) 296
MspI CCGG 1 cut(s) 297
MwoI GCNNNNNNNGC 1 cut(s) 233
NdeII GATC 2 cut(s) 15, 118
NlaIII CATG 6 cut(s) 15, 156, 164, 198, 227, 241
NsiI ATGCAT 1 cut(s) 229
NspI RCATGY 1 cut(s) 156
PfeI GAWTC 1 cut(s) 241
PflMI CCANNNNNTGG 1 cut(s) 93
PleI GAGTC 1 cut(s) 294
PpsI GAGTC 1 cut(s) 294
PsuI RGATCY 1 cut(s) 15
Sau3AI GATC 2 cut(s) 15, 118
SchI GAGTC 1 cut(s) 294
SetI ASST 5 cut(s) 48, 75, 112, 216, 326
SfaNI GCATC 1 cut(s) 236
Sse9I AATT 1 cut(s) 283
SspMI CTAG 1 cut(s) 207
TaiI ACGT 1 cut(s) 75
TasI AATT 1 cut(s) 283
TfiI GAWTC 1 cut(s) 241
TspDTI ATGAA 2 cut(s) 55, 254
Van91I CCANNNNNTGG 1 cut(s) 93
XceI RCATGY 1 cut(s) 156
XspI CTAG 1 cut(s) 207
Zsp2I ATGCAT 1 cut(s) 229
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.