Rorug05G0110800

Glucan endo-1,3-beta-glucosidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0012725
Physical Location & Seq
Forward (+)
9885081 .. 9885848
768 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0110800.1

Sequence Viewer

Length: 768 bp
ATGACTCACAAATCAACACAGATCAGCAGCGAGAGGTTCGATCGGCTTCCTAAGACCGGTGTGGAAAATCAAAAGAGCTCTTGGAATTGGCTGGAAAGCCGTATCCGTCGTGTGATCTCCGATGTCCGCGAGTTCGCTAATACCATTGTCAAGCAAAAGAAGCGAGAAATGGACGAGATGAACACCCTGGAGTCTCACGATCTACTGTCTCGGTTCTTAGGATCCGGCCACTCAGACGAGAAATTCGTCACTGACATCGTCATCAGCTTCACCCTCTCCGGAAGAGACACTACCTCGGTTGCACTGGCCTGGTTCTTCTGGCTAATATCAAACCACCCAAACGTGGATAGCGAAATTCTCGAGGAAATAGAAGAGAAATCGAAGACTGGTGTAGGATATGATGAAGCGAATGACATGGTGTATACATACGCGGCGCTCTGCGAGAGCATGAGACTGTACCCGCCGGTTCCGATTAACAGTAAAGAGGTGGTGATCGACGACGTTTTGCCGAACGGGACTAAAGTGAAGAAGGGGATGGCAGTGTCATACCATGTTTACGCGATGGGGAGGATAGAGCAGATATGGGGCAAGGACTGGGCAGAGTTCCAACTTGAGAAGTGGTTGGAGCGTGGCGTGGCGACGGAGAAGTGGAGGCTTGTGGCAAAGGACTCGTTTAGCTACCCGGTGTTTCAGGCGGGGTCGGGGATTTGTTTAGGGAAGGCGATGGCGTTCTTGCAGATGAAGAGGATATGGTTGTTGGGGTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

255

Amino Acids

29.33

Weight (kDa)

6.25

Isoelectric Point (pI)

38.33

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
p450 PF00067 28 - 248 4.6e-34 Cytochrome P450
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012725)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78520 AT2G43670
fragaria_vesca FvH4_3g17340
malus_domestica MD11G1273700.v1.1
prunus_persica Prupe.4G153400_v2.0.a1
pyrus_communis pycom11g24140
rosa_chinensis RchiOBHm_Chr5g0028861
rosa_laevigata RLG00000033120
rosa_multiflora Rmu_sc0005178.1_g000012
rosa_roxburghii Rroxscaffold_1G00051020
rosa_rugosa Rorug05G0110800 Rorug05G0110900 Rorug05G0111000
rosa_samantha Rh5AG203300 Rh5BG201400 Rh5CG222400 Rh5DG205000
rosa_wichuraiana Rw5G018390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 422
AccII CGCG 3 cut(s) 129, 431, 560
AccIII TCCGGA 1 cut(s) 278
AciI CCGC 4 cut(s) 127, 431, 461, 695
AclWI GGATC 2 cut(s) 216, 229
AcoI YGGCCR 1 cut(s) 226
AcsI RAATTY 2 cut(s) 242, 354
AfaI GTAC 1 cut(s) 458
AfiI CCNNNNNNNGG 2 cut(s) 56, 343
AgeI ACCGGT 1 cut(s) 56
AjnI CCWGG 2 cut(s) 186, 308
AluBI AGCT 3 cut(s) 78, 267, 678
AluI AGCT 3 cut(s) 78, 267, 678
Alw21I GWGCWC 1 cut(s) 80
Alw26I GTCTC 4 cut(s) 198, 213, 279, 445
AlwI GGATC 2 cut(s) 216, 229
Ama87I CYCGRG 1 cut(s) 359
Aor13HI TCCGGA 1 cut(s) 278
AoxI GGCC 2 cut(s) 226, 306
ApeKI GCWGC 1 cut(s) 27
ApoI RAATTY 2 cut(s) 242, 354
ArsI GACNNNNNNTTYG 2 cut(s) 227, 259
AsiGI ACCGGT 1 cut(s) 56
AspLEI GCGC 1 cut(s) 436
AsuC2I CCSGG 1 cut(s) 683
AsuHPI GGTGA 2 cut(s) 262, 502
AvaI CYCGRG 1 cut(s) 359
BamHI GGATCC 1 cut(s) 221
BanII GRGCYC 1 cut(s) 80
BarI GAAGNNNNNNTAC 2 cut(s) 274, 306
BbsI GAAGAC 1 cut(s) 389
Bbv12I GWGCWC 1 cut(s) 80
BbvI GCAGC 1 cut(s) 39
BccI CCATC 3 cut(s) 529, 556, 718
BceAI ACGGC 1 cut(s) 84
BcgI CGANNNNNNTGC 2 cut(s) 651, 685
BciT130I CCWGG 2 cut(s) 188, 310
BciVI GTATCC 1 cut(s) 113
BcnI CCSGG 1 cut(s) 683
BcoDI GTCTC 4 cut(s) 198, 213, 279, 445
BfoI RGCGCY 1 cut(s) 437
BfuI GTATCC 1 cut(s) 113
BisI GCNGC 2 cut(s) 28, 432
BlsI GCNGC 2 cut(s) 29, 433
Bme1390I CCNGG 3 cut(s) 188, 310, 683
BmeT110I CYCGRG 1 cut(s) 359
BmiI GGNNCC 2 cut(s) 223, 468
BmrFI CCNGG 3 cut(s) 188, 310, 683
BmrI ACTGGG 1 cut(s) 604
BmuI ACTGGG 1 cut(s) 604
BpiI GAAGAC 1 cut(s) 389
BpmI CTGGAG 1 cut(s) 209
BpuEI CTTGAG 1 cut(s) 632
BpuMI CCSGG 1 cut(s) 683
BsaJI CCNNGG 2 cut(s) 186, 294
BsaWI WCCGGW 2 cut(s) 56, 278
Bsc4I CCNNNNNNNGG 2 cut(s) 56, 343
Bse118I RCCGGY 2 cut(s) 56, 463
Bse1I ACTGG 3 cut(s) 309, 391, 599
BseAI TCCGGA 1 cut(s) 278
BseBI CCWGG 2 cut(s) 188, 310
BseDI CCNNGG 2 cut(s) 186, 294
BseGI GGATG 1 cut(s) 540
BseLI CCNNNNNNNGG 2 cut(s) 56, 343
BseMII CTCAG 1 cut(s) 246
BseNI ACTGG 3 cut(s) 309, 391, 599
BseXI GCAGC 1 cut(s) 39
Bsh1236I CGCG 3 cut(s) 129, 431, 560
Bsh1285I CGRYCG 1 cut(s) 43
BshFI GGCC 2 cut(s) 228, 308
BshTI ACCGGT 1 cut(s) 56
BsiEI CGRYCG 1 cut(s) 43
BsiHKAI GWGCWC 1 cut(s) 80
BsiHKCI CYCGRG 1 cut(s) 359
BsiSI CCGG 5 cut(s) 57, 225, 279, 464, 683
BslFI GGGAC 1 cut(s) 529
BslI CCNNNNNNNGG 2 cut(s) 56, 343
BsmAI GTCTC 4 cut(s) 198, 213, 279, 445
BsmFI GGGAC 1 cut(s) 529
BsnI GGCC 2 cut(s) 228, 308
BsoBI CYCGRG 1 cut(s) 359
Bsp1286I GDGCHC 1 cut(s) 80
Bsp13I TCCGGA 1 cut(s) 278
Bsp143I GATC 6 cut(s) 21, 40, 114, 199, 221, 492
BspACI CCGC 4 cut(s) 127, 431, 461, 695
BspANI GGCC 2 cut(s) 228, 308
BspCNI CTCAG 1 cut(s) 245
BspEI TCCGGA 1 cut(s) 278
BspFNI CGCG 3 cut(s) 129, 431, 560
BspLI GGNNCC 2 cut(s) 223, 468
BspPI GGATC 2 cut(s) 216, 229
BsrFI RCCGGY 2 cut(s) 56, 463
BsrI ACTGG 3 cut(s) 309, 391, 599
BssAI RCCGGY 2 cut(s) 56, 463
BssECI CCNNGG 2 cut(s) 186, 294
BssMI GATC 6 cut(s) 21, 40, 114, 199, 221, 492
BssNAI GTATAC 1 cut(s) 423
Bst1107I GTATAC 1 cut(s) 423
Bst2UI CCWGG 2 cut(s) 188, 310
Bst4CI ACNGT 3 cut(s) 207, 456, 479
Bst6I CTCTTC 3 cut(s) 277, 366, 737
BstDEI CTNAG 3 cut(s) 51, 217, 232
BstF5I GGATG 1 cut(s) 540
BstFNI CGCG 3 cut(s) 129, 431, 560
BstH2I RGCGCY 1 cut(s) 437
BstHHI GCGC 1 cut(s) 436
BstKTI GATC 6 cut(s) 24, 43, 117, 202, 224, 495
BstMAI GTCTC 4 cut(s) 198, 213, 279, 445
BstMBI GATC 6 cut(s) 21, 40, 114, 199, 221, 492
BstMCI CGRYCG 1 cut(s) 43
BstMWI GCNNNNNNNGC 1 cut(s) 160
BstNI CCWGG 2 cut(s) 188, 310
BstSCI CCNGG 3 cut(s) 186, 308, 681
BstUI CGCG 3 cut(s) 129, 431, 560
BstV1I GCAGC 1 cut(s) 39
BstV2I GAAGAC 1 cut(s) 389
BstX2I RGATCY 1 cut(s) 221
BstYI RGATCY 1 cut(s) 221
BstZ17I GTATAC 1 cut(s) 423
BsuI GTATCC 1 cut(s) 113
BsuRI GGCC 2 cut(s) 228, 308
BtgZI GCGATG 2 cut(s) 575, 737
BtsCI GGATG 1 cut(s) 540
BtsI GCAGTG 1 cut(s) 546
BtsIMutI CAGTG 3 cut(s) 249, 302, 546
CfoI GCGC 1 cut(s) 436
Cfr10I RCCGGY 2 cut(s) 56, 463
Csp6I GTAC 1 cut(s) 457
CspAI ACCGGT 1 cut(s) 56
CviAII CATG 3 cut(s) 415, 448, 551
CviQI GTAC 1 cut(s) 457
DdeI CTNAG 3 cut(s) 51, 217, 232
DpnI GATC 6 cut(s) 23, 42, 116, 201, 223, 494
DpnII GATC 6 cut(s) 21, 40, 114, 199, 221, 492
EaeI YGGCCR 1 cut(s) 226
Eam1104I CTCTTC 3 cut(s) 277, 366, 737
EarI CTCTTC 3 cut(s) 277, 366, 737
Ecl136II GAGCTC 1 cut(s) 78
Eco24I GRGCYC 1 cut(s) 80
Eco53kI GAGCTC 1 cut(s) 78
Eco88I CYCGRG 1 cut(s) 359
EcoICRI GAGCTC 1 cut(s) 78
EcoRII CCWGG 2 cut(s) 186, 308
EcoT38I GRGCYC 1 cut(s) 80
FaeI CATG 3 cut(s) 418, 451, 554
FaiI YATR 9 cut(s) 399, 416, 423, 427, 449, 547, 552, 583, 751
FaqI GGGAC 1 cut(s) 529
FatI CATG 3 cut(s) 414, 447, 550
FauI CCCGC 2 cut(s) 468, 688
FblI GTMKAC 1 cut(s) 422
Fnu4HI GCNGC 2 cut(s) 28, 432
FokI GGATG 1 cut(s) 547
FriOI GRGCYC 1 cut(s) 80
Fsp4HI GCNGC 2 cut(s) 28, 432
GlaI GCGC 1 cut(s) 435
GluI GCNGC 2 cut(s) 28, 432
GsuI CTGGAG 1 cut(s) 209
HaeII RGCGCY 1 cut(s) 437
HaeIII GGCC 2 cut(s) 228, 308
HapII CCGG 5 cut(s) 57, 225, 279, 464, 683
HhaI GCGC 1 cut(s) 436
Hin1II CATG 3 cut(s) 418, 451, 554
Hin6I GCGC 1 cut(s) 434
HinP1I GCGC 1 cut(s) 434
HinfI GANTC 3 cut(s) 4, 191, 668
HpaII CCGG 5 cut(s) 57, 225, 279, 464, 683
HphI GGTGA 2 cut(s) 262, 502
Hpy166II GTNNAC 2 cut(s) 423, 556
Hpy188I TCNGA 3 cut(s) 121, 235, 471
Hpy188III TCNNGA 3 cut(s) 197, 279, 359
Hpy8I GTNNAC 2 cut(s) 423, 556
Hpy99I CGWCG 4 cut(s) 111, 500, 503, 643
HpyAV CCTTC 2 cut(s) 523, 712
HpyCH4III ACNGT 3 cut(s) 207, 456, 479
HpyCH4IV ACGT 2 cut(s) 342, 501
HpyCH4V TGCA 2 cut(s) 302, 736
HpyF10VI GCNNNNNNNGC 1 cut(s) 160
HpyF3I CTNAG 3 cut(s) 51, 217, 232
HpySE526I ACGT 2 cut(s) 342, 501
Hsp92II CATG 3 cut(s) 418, 451, 554
HspAI GCGC 1 cut(s) 434
Kpn2I TCCGGA 1 cut(s) 278
Kzo9I GATC 6 cut(s) 21, 40, 114, 199, 221, 492
LmnI GCTCC 1 cut(s) 625
Lsp1109I GCAGC 1 cut(s) 39
MaeII ACGT 2 cut(s) 342, 501
MaeIII GTNAC 1 cut(s) 247
MalI GATC 6 cut(s) 23, 42, 116, 201, 223, 494
MboI GATC 6 cut(s) 21, 40, 114, 199, 221, 492
MboII GAAGA 6 cut(s) 294, 307, 383, 394, 538, 754
MflI RGATCY 1 cut(s) 221
MhlI GDGCHC 1 cut(s) 80
MluCI AATT 3 cut(s) 85, 242, 354
MlyI GAGTC 2 cut(s) 200, 662
MmeI TCCRAC 2 cut(s) 603, 631
MnlI CCTC 8 cut(s) 27, 284, 304, 355, 478, 561, 645, 738
MroI TCCGGA 1 cut(s) 278
MseI TTAA 1 cut(s) 474
MspI CCGG 5 cut(s) 57, 225, 279, 464, 683
MspR9I CCNGG 3 cut(s) 188, 310, 683
MvaI CCWGG 2 cut(s) 188, 310
MvnI CGCG 3 cut(s) 129, 431, 560
MwoI GCNNNNNNNGC 1 cut(s) 160
NciI CCSGG 1 cut(s) 683
NdeII GATC 6 cut(s) 21, 40, 114, 199, 221, 492
NlaIII CATG 3 cut(s) 418, 451, 554
NlaIV GGNNCC 2 cut(s) 223, 468
NmuCI GTSAC 1 cut(s) 247
PaeR7I CTCGAG 1 cut(s) 359
PcsI WCGNNNNNNNCGW 2 cut(s) 243, 348
PflFI GACNNNGTC 1 cut(s) 257
PinAI ACCGGT 1 cut(s) 56
PkrI GCNGC 2 cut(s) 29, 433
Ple19I CGATCG 1 cut(s) 43
PleI GAGTC 2 cut(s) 199, 662
PpsI GAGTC 2 cut(s) 199, 662
Psp124BI GAGCTC 1 cut(s) 80
Psp6I CCWGG 2 cut(s) 186, 308
PspGI CCWGG 2 cut(s) 186, 308
PspN4I GGNNCC 2 cut(s) 223, 468
PsuI RGATCY 1 cut(s) 221
PsyI GACNNNGTC 1 cut(s) 257
PvuI CGATCG 1 cut(s) 43
RsaI GTAC 1 cut(s) 458
RsaNI GTAC 1 cut(s) 457
SacI GAGCTC 1 cut(s) 80
SaqAI TTAA 1 cut(s) 474
SatI GCNGC 2 cut(s) 28, 432
Sau3AI GATC 6 cut(s) 21, 40, 114, 199, 221, 492
SchI GAGTC 2 cut(s) 200, 662
ScrFI CCNGG 3 cut(s) 188, 310, 683
SduI GDGCHC 1 cut(s) 80
SetI ASST 8 cut(s) 38, 80, 269, 296, 345, 489, 504, 680
Sfr274I CTCGAG 1 cut(s) 359
SlaI CTCGAG 1 cut(s) 359
SmlI CTYRAG 2 cut(s) 359, 611
SmoI CTYRAG 2 cut(s) 359, 611
Sse9I AATT 3 cut(s) 85, 242, 354
SsiI CCGC 4 cut(s) 127, 431, 461, 695
SstI GAGCTC 1 cut(s) 80
StyD4I CCNGG 3 cut(s) 186, 308, 681
TaaI ACNGT 3 cut(s) 207, 456, 479
TaiI ACGT 2 cut(s) 345, 504
TaqI TCGA 4 cut(s) 39, 360, 380, 495
TasI AATT 3 cut(s) 85, 242, 354
TauI GCSGC 1 cut(s) 434
Tru1I TTAA 1 cut(s) 474
Tru9I TTAA 1 cut(s) 474
TscAI CASTG 3 cut(s) 256, 309, 546
TseFI GTSAC 1 cut(s) 247
TseI GCWGC 1 cut(s) 27
Tsp45I GTSAC 1 cut(s) 247
TspDTI ATGAA 3 cut(s) 194, 417, 755
TspGWI ACGGA 2 cut(s) 95, 656
TspRI CASTG 3 cut(s) 256, 309, 546
Tth111I GACNNNGTC 1 cut(s) 257
XapI RAATTY 2 cut(s) 242, 354
XhoI CTCGAG 1 cut(s) 359
XmiI GTMKAC 1 cut(s) 422
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.