FvH4_3g17340

Glucan endo-1,3-beta-glucosidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0012725
Physical Location & Seq
Reverse (-)
11047112 .. 11048653
1542 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g17340.t1

Sequence Viewer

Length: 342 bp
ATGGCTAAAGCAACTGATCTCACTCTTTTGCTCCTGCTCTTCTGCTTCAGTTCAGAAATTTTGGTCATGGTAAATGGGGAGAAAACTTGGTGTGTGGCTAAACCTTCAACAGACCAAGCAACGCTTTTAGCGAATCTGAATTTCGCATGCTCTCACGTAGATTGTCGGATTCTTCAAGGTGGATGTCCATGCTCCTCTCCAGATAATCTCATGAATCATGCCTCCATAGCCATGAATCTATACTACCAAGCTAAAGGAAGGAACCAGTGGAATTGTGATTTTAGGTGCTCTGGTCTTATTGTCATGACTAATCCAAGTTATGGTGACTGCATCTATGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

114

Amino Acids

12.44

Weight (kDa)

6.0

Isoelectric Point (pI)

30.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 29 - 96 3.5e-18 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012725)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78520 AT2G43670
fragaria_vesca FvH4_3g17340
malus_domestica MD11G1273700.v1.1
prunus_persica Prupe.4G153400_v2.0.a1
pyrus_communis pycom11g24140
rosa_chinensis RchiOBHm_Chr5g0028861
rosa_laevigata RLG00000033120
rosa_multiflora Rmu_sc0005178.1_g000012
rosa_roxburghii Rroxscaffold_1G00051020
rosa_rugosa Rorug05G0110800 Rorug05G0110900 Rorug05G0111000
rosa_samantha Rh5AG203300 Rh5BG201400 Rh5CG222400 Rh5DG205000
rosa_wichuraiana Rw5G018390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 320
AcsI RAATTY 2 cut(s) 57, 139
AcuI CTGAAG 1 cut(s) 31
AfiI CCNNNNNNNGG 1 cut(s) 320
AgsI TTSAA 2 cut(s) 108, 176
AluBI AGCT 1 cut(s) 251
AluI AGCT 1 cut(s) 251
Alw21I GWGCWC 1 cut(s) 290
ApoI RAATTY 2 cut(s) 57, 139
AsuHPI GGTGA 1 cut(s) 335
Bbv12I GWGCWC 1 cut(s) 290
BmiI GGNNCC 1 cut(s) 263
BpmI CTGGAG 1 cut(s) 183
BsaAI YACGTR 1 cut(s) 157
Bsc4I CCNNNNNNNGG 1 cut(s) 320
Bse1I ACTGG 1 cut(s) 265
BseGI GGATG 1 cut(s) 188
BseLI CCNNNNNNNGG 1 cut(s) 320
BseNI ACTGG 1 cut(s) 265
BseRI GAGGAG 1 cut(s) 184
BsiHKAI GWGCWC 1 cut(s) 290
BslI CCNNNNNNNGG 1 cut(s) 320
Bsp1286I GDGCHC 1 cut(s) 290
Bsp143I GATC 1 cut(s) 16
BspHI TCATGA 2 cut(s) 210, 303
BspLI GGNNCC 1 cut(s) 263
BspQI GCTCTTC 1 cut(s) 44
BsrI ACTGG 1 cut(s) 265
BssMI GATC 1 cut(s) 16
Bst6I CTCTTC 1 cut(s) 44
BstBAI YACGTR 1 cut(s) 157
BstC8I GCNNGC 1 cut(s) 148
BstF5I GGATG 1 cut(s) 188
BstKTI GATC 1 cut(s) 19
BstMBI GATC 1 cut(s) 16
BstMWI GCNNNNNNNGC 1 cut(s) 227
BstNSI RCATGY 1 cut(s) 150
BtsCI GGATG 1 cut(s) 188
BtsIMutI CAGTG 1 cut(s) 272
Cac8I GCNNGC 1 cut(s) 148
CciI TCATGA 2 cut(s) 210, 303
CviAII CATG 7 cut(s) 67, 147, 189, 211, 218, 232, 304
CviJI RGCY 4 cut(s) 5, 98, 230, 251
CviKI_1 RGCY 4 cut(s) 5, 98, 230, 251
DpnI GATC 1 cut(s) 18
DpnII GATC 1 cut(s) 16
Eam1104I CTCTTC 1 cut(s) 44
EarI CTCTTC 1 cut(s) 44
Eco57I CTGAAG 1 cut(s) 31
EcoT22I ATGCAT 1 cut(s) 340
FaeI CATG 7 cut(s) 70, 150, 192, 214, 221, 235, 307
FalI AAGNNNNNCTT 2 cut(s) 108, 140
FatI CATG 7 cut(s) 66, 146, 188, 210, 217, 231, 303
FokI GGATG 1 cut(s) 195
GsuI CTGGAG 1 cut(s) 183
Hin1II CATG 7 cut(s) 70, 150, 192, 214, 221, 235, 307
HinfI GANTC 4 cut(s) 133, 169, 214, 235
HphI GGTGA 1 cut(s) 335
Hpy188I TCNGA 3 cut(s) 55, 138, 168
Hpy188III TCNNGA 3 cut(s) 200, 211, 304
HpyAV CCTTC 2 cut(s) 114, 252
HpyCH4IV ACGT 1 cut(s) 156
HpyCH4V TGCA 2 cut(s) 330, 338
HpyF10VI GCNNNNNNNGC 1 cut(s) 227
HpySE526I ACGT 1 cut(s) 156
Hsp92II CATG 7 cut(s) 70, 150, 192, 214, 221, 235, 307
Kzo9I GATC 1 cut(s) 16
LguI GCTCTTC 1 cut(s) 44
LmnI GCTCC 2 cut(s) 36, 197
LpnPI CCDG 4 cut(s) 47, 213, 276, 278
MaeII ACGT 1 cut(s) 156
MaeIII GTNAC 1 cut(s) 323
MalI GATC 1 cut(s) 18
MboI GATC 1 cut(s) 16
MboII GAAGA 2 cut(s) 31, 164
MhlI GDGCHC 1 cut(s) 290
MluCI AATT 3 cut(s) 57, 139, 271
MmeI TCCRAC 1 cut(s) 146
MnlI CCTC 2 cut(s) 205, 232
Mph1103I ATGCAT 1 cut(s) 340
MslI CAYNNNNRTG 1 cut(s) 230
MwoI GCNNNNNNNGC 1 cut(s) 227
NdeII GATC 1 cut(s) 16
NlaIII CATG 7 cut(s) 70, 150, 192, 214, 221, 235, 307
NlaIV GGNNCC 1 cut(s) 263
NmuCI GTSAC 1 cut(s) 323
NsiI ATGCAT 1 cut(s) 340
NspI RCATGY 1 cut(s) 150
PaeI GCATGC 1 cut(s) 150
PagI TCATGA 2 cut(s) 210, 303
PciSI GCTCTTC 1 cut(s) 44
PcsI WCGNNNNNNNCGW 1 cut(s) 128
PfeI GAWTC 4 cut(s) 133, 169, 214, 235
PflMI CCANNNNNTGG 1 cut(s) 320
Ppu21I YACGTR 1 cut(s) 157
PspN4I GGNNCC 1 cut(s) 263
RseI CAYNNNNRTG 1 cut(s) 230
SapI GCTCTTC 1 cut(s) 44
Sau3AI GATC 1 cut(s) 16
SduI GDGCHC 1 cut(s) 290
SetI ASST 5 cut(s) 106, 159, 181, 253, 287
SmiMI CAYNNNNRTG 1 cut(s) 230
SphI GCATGC 1 cut(s) 150
Sse9I AATT 3 cut(s) 57, 139, 271
TaiI ACGT 1 cut(s) 159
TasI AATT 3 cut(s) 57, 139, 271
TfiI GAWTC 4 cut(s) 133, 169, 214, 235
TscAI CASTG 1 cut(s) 272
TseFI GTSAC 1 cut(s) 323
Tsp45I GTSAC 1 cut(s) 323
TspDTI ATGAA 2 cut(s) 227, 248
TspRI CASTG 1 cut(s) 272
Van91I CCANNNNNTGG 1 cut(s) 320
XapI RAATTY 2 cut(s) 57, 139
XceI RCATGY 1 cut(s) 150
Zsp2I ATGCAT 1 cut(s) 340
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.