AT2G43670

X8 domain

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
2
OG0012725
Physical Location & Seq
Forward (+)
18105085 .. 18106043
959 bp
Loading structure...
UTR
Exon/CDS
Intron
AT2G43670.1

Sequence Viewer

Length: 366 bp
ATGGCTAAAGCACAAATATGTCTTTGTTTCATCATTTTCTTATACCTCTGGCCAGAAGGAAATTTCATCAAAGTCACCAAGGCAGATCGCTCGGCCGGAGATTGGTGCGTTGCTAAACCTTCTACGGATAACGAAAGGCTTCAAGAAAACATAAACTTCGCGTGTTCGAAAATCGATTGTCAGATTATCTCGGAAGGAGGTGCATGTTATTTACCAGATAGTATCATTAGTCGTGCTTCTGTTGCCATGAATCTTTATTACCAAGCTCAAGGAAGACATTTTTGGAACTGCAATTTTGAAGGCTCTGGTCTCATCGGCATAACTGATCCTAGCTATGGAAGTTGCATTTATCAATTTCGTAAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

121

Amino Acids

13.61

Weight (kDa)

6.53

Isoelectric Point (pI)

36.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 35 - 103 5.4e-22 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0012725)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78520 AT2G43670
fragaria_vesca FvH4_3g17340
malus_domestica MD11G1273700.v1.1
prunus_persica Prupe.4G153400_v2.0.a1
pyrus_communis pycom11g24140
rosa_chinensis RchiOBHm_Chr5g0028861
rosa_laevigata RLG00000033120
rosa_multiflora Rmu_sc0005178.1_g000012
rosa_roxburghii Rroxscaffold_1G00051020
rosa_rugosa Rorug05G0110800 Rorug05G0110900 Rorug05G0111000
rosa_samantha Rh5AG203300 Rh5BG201400 Rh5CG222400 Rh5DG205000
rosa_wichuraiana Rw5G018390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 161
AclWI GGATC 1 cut(s) 320
AcoI YGGCCR 2 cut(s) 50, 93
AcsI RAATTY 1 cut(s) 61
AfiI CCNNNNNNNGG 2 cut(s) 102, 335
AgsI TTSAA 2 cut(s) 143, 299
AjuI GAANNNNNNNTTGG 2 cut(s) 265, 297
AluBI AGCT 2 cut(s) 266, 333
AluI AGCT 2 cut(s) 266, 333
Alw26I GTCTC 1 cut(s) 314
AlwI GGATC 1 cut(s) 320
AoxI GGCC 2 cut(s) 50, 93
ApoI RAATTY 1 cut(s) 61
Asp700I GAANNNNTTC 1 cut(s) 138
AsuHPI GGTGA 1 cut(s) 67
AsuII TTCGAA 1 cut(s) 167
BalI TGGCCA 1 cut(s) 52
BbsI GAAGAC 1 cut(s) 280
BcgI CGANNNNNNTGC 2 cut(s) 72, 106
BcoDI GTCTC 1 cut(s) 314
BfaI CTAG 1 cut(s) 330
BpiI GAAGAC 1 cut(s) 280
Bpu14I TTCGAA 1 cut(s) 167
BpuEI CTTGAG 1 cut(s) 252
Bsa29I ATCGAT 1 cut(s) 174
BsaI GGTCTC 1 cut(s) 314
BsaJI CCNNGG 1 cut(s) 78
Bsc4I CCNNNNNNNGG 2 cut(s) 102, 335
BseCI ATCGAT 1 cut(s) 174
BseDI CCNNGG 1 cut(s) 78
BseLI CCNNNNNNNGG 2 cut(s) 102, 335
BseX3I CGGCCG 1 cut(s) 93
Bsh1236I CGCG 1 cut(s) 161
Bsh1285I CGRYCG 1 cut(s) 96
BshFI GGCC 2 cut(s) 52, 95
BshVI ATCGAT 1 cut(s) 174
BsiEI CGRYCG 1 cut(s) 96
BsiSI CCGG 1 cut(s) 96
BslI CCNNNNNNNGG 2 cut(s) 102, 335
BsmAI GTCTC 1 cut(s) 314
BsnI GGCC 2 cut(s) 52, 95
Bso31I GGTCTC 1 cut(s) 314
Bsp119I TTCGAA 1 cut(s) 167
Bsp143I GATC 2 cut(s) 85, 325
BspANI GGCC 2 cut(s) 52, 95
BspDI ATCGAT 1 cut(s) 174
BspFNI CGCG 1 cut(s) 161
BspPI GGATC 1 cut(s) 320
BspT104I TTCGAA 1 cut(s) 167
BspTNI GGTCTC 1 cut(s) 314
BssECI CCNNGG 1 cut(s) 78
BssMI GATC 2 cut(s) 85, 325
BssT1I CCWWGG 1 cut(s) 78
BstBI TTCGAA 1 cut(s) 167
BstFNI CGCG 1 cut(s) 161
BstKTI GATC 2 cut(s) 88, 328
BstMAI GTCTC 1 cut(s) 314
BstMBI GATC 2 cut(s) 85, 325
BstMCI CGRYCG 1 cut(s) 96
BstMWI GCNNNNNNNGC 1 cut(s) 242
BstNSI RCATGY 1 cut(s) 207
BstUI CGCG 1 cut(s) 161
BstV2I GAAGAC 1 cut(s) 280
BstZI CGGCCG 1 cut(s) 93
Bsu15I ATCGAT 1 cut(s) 174
BsuRI GGCC 2 cut(s) 52, 95
BsuTUI ATCGAT 1 cut(s) 174
ClaI ATCGAT 1 cut(s) 174
CviAII CATG 2 cut(s) 204, 247
CviJI RGCY 7 cut(s) 5, 52, 95, 139, 266, 303, 333
CviKI_1 RGCY 7 cut(s) 5, 52, 95, 139, 266, 303, 333
DpnI GATC 2 cut(s) 87, 327
DpnII GATC 2 cut(s) 85, 325
EaeI YGGCCR 2 cut(s) 50, 93
EagI CGGCCG 1 cut(s) 93
EclXI CGGCCG 1 cut(s) 93
Eco130I CCWWGG 1 cut(s) 78
Eco31I GGTCTC 1 cut(s) 314
Eco52I CGGCCG 1 cut(s) 93
EcoT14I CCWWGG 1 cut(s) 78
ErhI CCWWGG 1 cut(s) 78
FaeI CATG 2 cut(s) 207, 250
FaiI YATR 7 cut(s) 19, 43, 152, 205, 248, 320, 336
FatI CATG 2 cut(s) 203, 246
FspBI CTAG 1 cut(s) 330
HaeIII GGCC 2 cut(s) 52, 95
HapII CCGG 1 cut(s) 96
Hin1II CATG 2 cut(s) 207, 250
HinfI GANTC 1 cut(s) 250
HpaII CCGG 1 cut(s) 96
HphI GGTGA 1 cut(s) 67
Hpy188I TCNGA 2 cut(s) 183, 193
Hpy188III TCNNGA 1 cut(s) 143
HpyAV CCTTC 4 cut(s) 50, 129, 188, 293
HpyCH4V TGCA 3 cut(s) 203, 291, 345
HpyF10VI GCNNNNNNNGC 1 cut(s) 242
Hsp92II CATG 2 cut(s) 207, 250
Kzo9I GATC 2 cut(s) 85, 325
LpnPI CCDG 5 cut(s) 34, 66, 109, 228, 291
MaeI CTAG 1 cut(s) 330
MaeIII GTNAC 1 cut(s) 73
MalI GATC 2 cut(s) 87, 327
MboI GATC 2 cut(s) 85, 325
MboII GAAGA 1 cut(s) 285
MlsI TGGCCA 1 cut(s) 52
MluCI AATT 3 cut(s) 61, 292, 353
MluNI TGGCCA 1 cut(s) 52
MnlI CCTC 2 cut(s) 56, 191
Mox20I TGGCCA 1 cut(s) 52
MroXI GAANNNNTTC 1 cut(s) 138
MscI TGGCCA 1 cut(s) 52
MslI CAYNNNNRTG 1 cut(s) 16
Msp20I TGGCCA 1 cut(s) 52
MspI CCGG 1 cut(s) 96
MvnI CGCG 1 cut(s) 161
MwoI GCNNNNNNNGC 1 cut(s) 242
NdeII GATC 2 cut(s) 85, 325
NlaIII CATG 2 cut(s) 207, 250
NmeAIII GCCGAG 1 cut(s) 71
NmuCI GTSAC 1 cut(s) 73
NspI RCATGY 1 cut(s) 207
NspV TTCGAA 1 cut(s) 167
PdmI GAANNNNTTC 1 cut(s) 138
PfeI GAWTC 1 cut(s) 250
RseI CAYNNNNRTG 1 cut(s) 16
Sau3AI GATC 2 cut(s) 85, 325
SetI ASST 5 cut(s) 48, 121, 202, 268, 335
SfuI TTCGAA 1 cut(s) 167
SmiMI CAYNNNNRTG 1 cut(s) 16
SmlI CTYRAG 1 cut(s) 267
SmoI CTYRAG 1 cut(s) 267
Sse9I AATT 3 cut(s) 61, 292, 353
SspMI CTAG 1 cut(s) 330
StyI CCWWGG 1 cut(s) 78
TaqI TCGA 2 cut(s) 167, 174
TasI AATT 3 cut(s) 61, 292, 353
TfiI GAWTC 1 cut(s) 250
TseFI GTSAC 1 cut(s) 73
Tsp45I GTSAC 1 cut(s) 73
TspDTI ATGAA 3 cut(s) 19, 55, 263
TspGWI ACGGA 1 cut(s) 140
XapI RAATTY 1 cut(s) 61
XceI RCATGY 1 cut(s) 207
XmnI GAANNNNTTC 1 cut(s) 138
XspI CTAG 1 cut(s) 330
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.