Prupe.4G153400_v2.0.a1

Glucan endo-1,3-beta-glucosidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp04
OG0012725
Physical Location & Seq
Reverse (-)
8792167 .. 8793640
1474 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.4G153400.1

Sequence Viewer

Length: 339 bp
ATGGCTAAAGCAGCTGTCTCTCTGTTGCTCCTGCTCTTGTCCTTCACTTCAGAAACATTGCTCATGGTAAATGGACAGAAAACTTGGTGTGTGGCAAAGCCTTCATCAGACCAAGCAACACTTCTAGCGAATCTAAATTACGCGTGCTCTCACGTAGATTGCCAGATACTTCGAAAGGGATGCCCCTGCTCCTCTCCAGATAACCTCATCAATCATGCCTCTATAGCCATGAATCAATACTACCGAGCTAAGGGGAACAACCAGTGGAACTGTGATTTTAGGGGCTCTGCCCTCATTGTCATGACTGATCCAAGTTATGGTGACTGTATATATGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

113

Amino Acids

12.25

Weight (kDa)

7.55

Isoelectric Point (pI)

24.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012725)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78520 AT2G43670
fragaria_vesca FvH4_3g17340
malus_domestica MD11G1273700.v1.1
prunus_persica Prupe.4G153400_v2.0.a1
pyrus_communis pycom11g24140
rosa_chinensis RchiOBHm_Chr5g0028861
rosa_laevigata RLG00000033120
rosa_multiflora Rmu_sc0005178.1_g000012
rosa_roxburghii Rroxscaffold_1G00051020
rosa_rugosa Rorug05G0110800 Rorug05G0110900 Rorug05G0111000
rosa_samantha Rh5AG203300 Rh5BG201400 Rh5CG222400 Rh5DG205000
rosa_wichuraiana Rw5G018390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 317
AccII CGCG 1 cut(s) 143
AclWI GGATC 1 cut(s) 302
AcuI CTGAAG 1 cut(s) 33
AfiI CCNNNNNNNGG 2 cut(s) 250, 317
AflIII ACRYGT 1 cut(s) 141
AjuI GAANNNNNNNTTGG 2 cut(s) 105, 137
AluBI AGCT 2 cut(s) 14, 248
AluI AGCT 2 cut(s) 14, 248
Alw21I GWGCWC 1 cut(s) 149
Alw26I GTCTC 1 cut(s) 22
AlwI GGATC 1 cut(s) 302
ApeKI GCWGC 1 cut(s) 11
AsuHPI GGTGA 1 cut(s) 332
AsuII TTCGAA 1 cut(s) 172
BanII GRGCYC 1 cut(s) 287
Bbv12I GWGCWC 1 cut(s) 149
BbvI GCAGC 1 cut(s) 23
BcgI CGANNNNNNTGC 2 cut(s) 162, 196
BcoDI GTCTC 1 cut(s) 22
BfaI CTAG 1 cut(s) 125
BfmI CTRYAG 1 cut(s) 222
BisI GCNGC 1 cut(s) 12
BlsI GCNGC 1 cut(s) 13
BmsI GCATC 1 cut(s) 170
BpmI CTGGAG 1 cut(s) 180
Bpu10I CCTNAGC 1 cut(s) 249
Bpu14I TTCGAA 1 cut(s) 172
BsaAI YACGTR 1 cut(s) 154
Bsc4I CCNNNNNNNGG 2 cut(s) 250, 317
Bse1I ACTGG 1 cut(s) 262
Bse3DI GCAATG 1 cut(s) 56
BseGI GGATG 1 cut(s) 185
BseLI CCNNNNNNNGG 2 cut(s) 250, 317
BseMI GCAATG 1 cut(s) 56
BseNI ACTGG 1 cut(s) 262
BseRI GAGGAG 1 cut(s) 181
BseXI GCAGC 1 cut(s) 23
Bsh1236I CGCG 1 cut(s) 143
BsiHKAI GWGCWC 1 cut(s) 149
BslI CCNNNNNNNGG 2 cut(s) 250, 317
BsmAI GTCTC 1 cut(s) 22
Bsp119I TTCGAA 1 cut(s) 172
Bsp1286I GDGCHC 2 cut(s) 149, 287
Bsp143I GATC 1 cut(s) 307
BspFNI CGCG 1 cut(s) 143
BspHI TCATGA 1 cut(s) 300
BspPI GGATC 1 cut(s) 302
BspT104I TTCGAA 1 cut(s) 172
BsrDI GCAATG 1 cut(s) 56
BsrI ACTGG 1 cut(s) 262
BssMI GATC 1 cut(s) 307
Bst4CI ACNGT 2 cut(s) 272, 326
BstBAI YACGTR 1 cut(s) 154
BstBI TTCGAA 1 cut(s) 172
BstC8I GCNNGC 1 cut(s) 145
BstDEI CTNAG 1 cut(s) 249
BstF5I GGATG 1 cut(s) 185
BstFNI CGCG 1 cut(s) 143
BstKTI GATC 1 cut(s) 310
BstMAI GTCTC 1 cut(s) 22
BstMBI GATC 1 cut(s) 307
BstMWI GCNNNNNNNGC 2 cut(s) 11, 224
BstSFI CTRYAG 1 cut(s) 222
BstUI CGCG 1 cut(s) 143
BstV1I GCAGC 1 cut(s) 23
BtsCI GGATG 1 cut(s) 185
BtsIMutI CAGTG 1 cut(s) 269
Cac8I GCNNGC 1 cut(s) 145
CciI TCATGA 1 cut(s) 300
CviAII CATG 4 cut(s) 64, 215, 229, 301
CviJI RGCY 6 cut(s) 5, 14, 100, 227, 248, 285
CviKI_1 RGCY 6 cut(s) 5, 14, 100, 227, 248, 285
DdeI CTNAG 1 cut(s) 249
DpnI GATC 1 cut(s) 309
DpnII GATC 1 cut(s) 307
Eco24I GRGCYC 1 cut(s) 287
Eco57I CTGAAG 1 cut(s) 33
EcoT22I ATGCAT 1 cut(s) 337
EcoT38I GRGCYC 1 cut(s) 287
FaeI CATG 4 cut(s) 67, 218, 232, 304
FalI AAGNNNNNCTT 2 cut(s) 105, 137
FatI CATG 4 cut(s) 63, 214, 228, 300
Fnu4HI GCNGC 1 cut(s) 12
FokI GGATG 1 cut(s) 192
FriOI GRGCYC 1 cut(s) 287
Fsp4HI GCNGC 1 cut(s) 12
FspBI CTAG 1 cut(s) 125
GluI GCNGC 1 cut(s) 12
GsuI CTGGAG 1 cut(s) 180
Hin1II CATG 4 cut(s) 67, 218, 232, 304
HinfI GANTC 2 cut(s) 130, 232
HphI GGTGA 1 cut(s) 332
Hpy188I TCNGA 2 cut(s) 52, 109
Hpy188III TCNNGA 2 cut(s) 197, 301
HpyAV CCTTC 2 cut(s) 52, 111
HpyCH4III ACNGT 2 cut(s) 272, 326
HpyCH4IV ACGT 1 cut(s) 153
HpyCH4V TGCA 1 cut(s) 335
HpyF10VI GCNNNNNNNGC 2 cut(s) 11, 224
HpyF3I CTNAG 1 cut(s) 249
HpySE526I ACGT 1 cut(s) 153
Hsp92II CATG 4 cut(s) 67, 218, 232, 304
Kzo9I GATC 1 cut(s) 307
LmnI GCTCC 2 cut(s) 33, 194
LpnPI CCDG 5 cut(s) 44, 176, 199, 210, 275
Lsp1109I GCAGC 1 cut(s) 23
LweI GCATC 1 cut(s) 170
MaeI CTAG 1 cut(s) 125
MaeII ACGT 1 cut(s) 153
MaeIII GTNAC 1 cut(s) 320
MalI GATC 1 cut(s) 309
MboI GATC 1 cut(s) 307
MhlI GDGCHC 2 cut(s) 149, 287
MluCI AATT 1 cut(s) 136
MluI ACGCGT 1 cut(s) 141
MnlI CCTC 4 cut(s) 202, 215, 229, 302
Mph1103I ATGCAT 1 cut(s) 337
MslI CAYNNNNRTG 1 cut(s) 299
MspA1I CMGCKG 1 cut(s) 14
MvnI CGCG 1 cut(s) 143
MwoI GCNNNNNNNGC 2 cut(s) 11, 224
NdeII GATC 1 cut(s) 307
NlaIII CATG 4 cut(s) 67, 218, 232, 304
NmuCI GTSAC 1 cut(s) 320
NsiI ATGCAT 1 cut(s) 337
NspV TTCGAA 1 cut(s) 172
PagI TCATGA 1 cut(s) 300
PfeI GAWTC 2 cut(s) 130, 232
PflMI CCANNNNNTGG 1 cut(s) 317
PkrI GCNGC 1 cut(s) 13
Ppu21I YACGTR 1 cut(s) 154
PvuII CAGCTG 1 cut(s) 14
RseI CAYNNNNRTG 1 cut(s) 299
SatI GCNGC 1 cut(s) 12
Sau3AI GATC 1 cut(s) 307
SduI GDGCHC 2 cut(s) 149, 287
SetI ASST 4 cut(s) 16, 156, 207, 250
SfaNI GCATC 1 cut(s) 170
SfcI CTRYAG 1 cut(s) 222
SfuI TTCGAA 1 cut(s) 172
SmiMI CAYNNNNRTG 1 cut(s) 299
Sse9I AATT 1 cut(s) 136
SspMI CTAG 1 cut(s) 125
TaaI ACNGT 2 cut(s) 272, 326
TaiI ACGT 1 cut(s) 156
TaqI TCGA 1 cut(s) 172
TasI AATT 1 cut(s) 136
TfiI GAWTC 2 cut(s) 130, 232
TscAI CASTG 1 cut(s) 269
TseFI GTSAC 1 cut(s) 320
TseI GCWGC 1 cut(s) 11
Tsp45I GTSAC 1 cut(s) 320
TspDTI ATGAA 2 cut(s) 93, 245
TspRI CASTG 1 cut(s) 269
Van91I CCANNNNNTGG 1 cut(s) 317
XspI CTAG 1 cut(s) 125
Zsp2I ATGCAT 1 cut(s) 337
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.