Rorug05G0111000

Glucan endo-1,3-beta-glucosidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0012725
Physical Location & Seq
Forward (+)
9899410 .. 9904502
5093 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0111000.1

Sequence Viewer

Length: 615 bp
ATGTCACATGGTGAGATCTCAGGGTTGCTACACTTGGTTAAGAACACAGCGTCGAAGTACTTTGAGGTCAACGCAAATTTCGAAAGAGGAGGCGGAGGAGACCACAGTGGTGATTGGACGACCCAAATGATGATCCATTTGAGCTACGTCTACGAGCAAGGTTTCGTCACAAATCTACAATCTCGATGCGAATCTCTGCCTTCTTCATCTCTATCAGCCAGAACGTGTGAGCACTCAAATTGTTACACTGATATTGGAAAGCTTCTGAAGATGAAGCTAGATGAGGTTTCAGCTAGGACCATGGAGGTATTGGTGGATGCTTTTTCTAGTTCTGCAGGGCTGTCCACCTTCTCCTATACTGAGTTGGACTATGAACGGGGTGAACAGAATAGAGATTGCCAGTACGTTGAGGAGGAGGACCTCATGAGGTTCATGATTGAGAAAGAGGTGGAAATCTTTCGATTCTGCAGCTCTCAAGTACAGTTTATCTCATTCTCTGATGTTGAGTACCTGGAATCCGCCGTTTTCCGGTGGGCAAGGGTTTGTTTGAGGATGAGAAAGCACACAAAGTTAATTCTTCAACATTGGCTTGAAGCTATTGATCCACACCATTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

204

Amino Acids

23.57

Weight (kDa)

5.35

Isoelectric Point (pI)

35.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012725)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78520 AT2G43670
fragaria_vesca FvH4_3g17340
malus_domestica MD11G1273700.v1.1
prunus_persica Prupe.4G153400_v2.0.a1
pyrus_communis pycom11g24140
rosa_chinensis RchiOBHm_Chr5g0028861
rosa_laevigata RLG00000033120
rosa_multiflora Rmu_sc0005178.1_g000012
rosa_roxburghii Rroxscaffold_1G00051020
rosa_rugosa Rorug05G0110800 Rorug05G0110900 Rorug05G0111000
rosa_samantha Rh5AG203300 Rh5BG201400 Rh5CG222400 Rh5DG205000
rosa_wichuraiana Rw5G018390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 150
AciI CCGC 2 cut(s) 93, 519
AclWI GGATC 2 cut(s) 127, 596
AcsI RAATTY 1 cut(s) 76
AcuI CTGAAG 1 cut(s) 287
AdeI CACNNNGTG 1 cut(s) 11
AfaI GTAC 4 cut(s) 59, 404, 480, 509
AfiI CCNNNNNNNGG 1 cut(s) 528
AflIII ACRYGT 1 cut(s) 224
AgsI TTSAA 2 cut(s) 581, 593
AjnI CCWGG 1 cut(s) 510
AleI CACNNNNGTG 1 cut(s) 108
AluBI AGCT 6 cut(s) 144, 262, 277, 293, 471, 596
AluI AGCT 6 cut(s) 144, 262, 277, 293, 471, 596
Alw21I GWGCWC 1 cut(s) 234
Alw26I GTCTC 1 cut(s) 93
AlwI GGATC 2 cut(s) 127, 596
ApeKI GCWGC 1 cut(s) 468
ApoI RAATTY 1 cut(s) 76
Asp700I GAANNNNTTC 1 cut(s) 456
AspS9I GGNCC 2 cut(s) 297, 418
AsuHPI GGTGA 3 cut(s) 23, 122, 392
AsuII TTCGAA 1 cut(s) 81
AvaII GGWCC 2 cut(s) 297, 418
Bbv12I GWGCWC 1 cut(s) 234
BbvI GCAGC 1 cut(s) 480
BceAI ACGGC 1 cut(s) 506
BciT130I CCWGG 1 cut(s) 512
BcoDI GTCTC 1 cut(s) 93
BfaI CTAG 3 cut(s) 278, 294, 327
BfmI CTRYAG 2 cut(s) 333, 466
BglII AGATCT 1 cut(s) 15
BisI GCNGC 1 cut(s) 469
BlsI GCNGC 1 cut(s) 470
BmcAI AGTACT 1 cut(s) 59
Bme1390I CCNGG 1 cut(s) 512
Bme18I GGWCC 2 cut(s) 297, 418
BmgT120I GGNCC 2 cut(s) 297, 418
BmrFI CCNGG 1 cut(s) 512
BmsI GCATC 2 cut(s) 176, 307
Bpu14I TTCGAA 1 cut(s) 81
BpuEI CTTGAG 1 cut(s) 459
BsaBI GATNNNNATC 1 cut(s) 190
BsaI GGTCTC 1 cut(s) 93
BsaJI CCNNGG 1 cut(s) 300
BsaWI WCCGGW 1 cut(s) 528
Bsc4I CCNNNNNNNGG 1 cut(s) 528
Bse1I ACTGG 1 cut(s) 400
Bse8I GATNNNNATC 1 cut(s) 190
BseBI CCWGG 1 cut(s) 512
BseDI CCNNGG 1 cut(s) 300
BseGI GGATG 2 cut(s) 322, 558
BseJI GATNNNNATC 1 cut(s) 190
BseLI CCNNNNNNNGG 1 cut(s) 528
BseMII CTCAG 2 cut(s) 33, 351
BseNI ACTGG 1 cut(s) 400
BseRI GAGGAG 4 cut(s) 102, 111, 425, 428
BseXI GCAGC 1 cut(s) 480
BsiHKAI GWGCWC 1 cut(s) 234
BsiSI CCGG 1 cut(s) 529
BslI CCNNNNNNNGG 1 cut(s) 528
BsmAI GTCTC 1 cut(s) 93
Bso31I GGTCTC 1 cut(s) 93
Bsp119I TTCGAA 1 cut(s) 81
Bsp1286I GDGCHC 1 cut(s) 234
Bsp143I GATC 3 cut(s) 15, 132, 601
Bsp19I CCATGG 1 cut(s) 300
BspACI CCGC 2 cut(s) 93, 519
BspCNI CTCAG 2 cut(s) 32, 352
BspHI TCATGA 2 cut(s) 423, 432
BspMAI CTGCAG 2 cut(s) 337, 470
BspPI GGATC 2 cut(s) 127, 596
BspT104I TTCGAA 1 cut(s) 81
BspTNI GGTCTC 1 cut(s) 93
BsrI ACTGG 1 cut(s) 400
BssECI CCNNGG 1 cut(s) 300
BssMI GATC 3 cut(s) 15, 132, 601
BssT1I CCWWGG 1 cut(s) 300
Bst2UI CCWGG 1 cut(s) 512
Bst4CI ACNGT 2 cut(s) 107, 483
BstBI TTCGAA 1 cut(s) 81
BstDEI CTNAG 2 cut(s) 19, 360
BstDSI CCRYGG 1 cut(s) 300
BstF5I GGATG 2 cut(s) 322, 558
BstKTI GATC 3 cut(s) 18, 135, 604
BstMAI GTCTC 1 cut(s) 93
BstMBI GATC 3 cut(s) 15, 132, 601
BstNI CCWGG 1 cut(s) 512
BstSCI CCNGG 1 cut(s) 510
BstSFI CTRYAG 2 cut(s) 333, 466
BstV1I GCAGC 1 cut(s) 480
BstX2I RGATCY 1 cut(s) 15
BstYI RGATCY 1 cut(s) 15
BtgI CCRYGG 1 cut(s) 300
BtsCI GGATG 2 cut(s) 322, 558
BtsIMutI CAGTG 2 cut(s) 112, 246
CciI TCATGA 2 cut(s) 423, 432
Cfr13I GGNCC 2 cut(s) 297, 418
CseI GACGC 1 cut(s) 39
Csp6I GTAC 4 cut(s) 58, 403, 479, 508
CviAII CATG 4 cut(s) 8, 301, 424, 433
CviJI RGCY 9 cut(s) 144, 218, 262, 277, 293, 340, 471, 589, 596
CviKI_1 RGCY 9 cut(s) 144, 218, 262, 277, 293, 340, 471, 589, 596
CviQI GTAC 4 cut(s) 58, 403, 479, 508
DdeI CTNAG 2 cut(s) 19, 360
DpnI GATC 3 cut(s) 17, 134, 603
DpnII GATC 3 cut(s) 15, 132, 601
DraIII CACNNNGTG 1 cut(s) 11
EciI GGCGGA 2 cut(s) 108, 508
Eco130I CCWWGG 1 cut(s) 300
Eco31I GGTCTC 1 cut(s) 93
Eco47I GGWCC 2 cut(s) 297, 418
Eco57I CTGAAG 1 cut(s) 287
EcoO109I RGGNCCY 1 cut(s) 418
EcoRII CCWGG 1 cut(s) 510
EcoT14I CCWWGG 1 cut(s) 300
ErhI CCWWGG 1 cut(s) 300
FaeI CATG 4 cut(s) 11, 304, 427, 436
FaiI YATR 6 cut(s) 9, 302, 357, 372, 425, 434
FatI CATG 4 cut(s) 7, 300, 423, 432
FblI GTMKAC 1 cut(s) 150
Fnu4HI GCNGC 1 cut(s) 469
FokI GGATG 2 cut(s) 329, 565
Fsp4HI GCNGC 1 cut(s) 469
FspBI CTAG 3 cut(s) 278, 294, 327
GluI GCNGC 1 cut(s) 469
HapII CCGG 1 cut(s) 529
HgaI GACGC 1 cut(s) 39
Hin1II CATG 4 cut(s) 11, 304, 427, 436
HincII GTYRAC 1 cut(s) 70
HindII GTYRAC 1 cut(s) 70
HindIII AAGCTT 1 cut(s) 260
HinfI GANTC 3 cut(s) 191, 462, 515
HpaII CCGG 1 cut(s) 529
HphI GGTGA 3 cut(s) 23, 122, 392
Hpy166II GTNNAC 4 cut(s) 70, 151, 345, 383
Hpy188I TCNGA 2 cut(s) 267, 499
Hpy188III TCNNGA 3 cut(s) 183, 424, 433
Hpy8I GTNNAC 4 cut(s) 70, 151, 345, 383
Hpy99I CGWCG 1 cut(s) 55
HpyAV CCTTC 2 cut(s) 210, 358
HpyCH4III ACNGT 2 cut(s) 107, 483
HpyCH4IV ACGT 3 cut(s) 147, 224, 405
HpyCH4V TGCA 2 cut(s) 335, 468
HpyF3I CTNAG 2 cut(s) 19, 360
HpySE526I ACGT 3 cut(s) 147, 224, 405
Hsp92II CATG 4 cut(s) 11, 304, 427, 436
Kzo9I GATC 3 cut(s) 15, 132, 601
LpnPI CCDG 7 cut(s) 6, 232, 321, 413, 497, 524, 542
Lsp1109I GCAGC 1 cut(s) 480
LweI GCATC 2 cut(s) 176, 307
MaeI CTAG 3 cut(s) 278, 294, 327
MaeII ACGT 3 cut(s) 147, 224, 405
MaeIII GTNAC 3 cut(s) 3, 166, 242
MalI GATC 3 cut(s) 17, 134, 603
MboI GATC 3 cut(s) 15, 132, 601
MboII GAAGA 3 cut(s) 195, 280, 569
MflI RGATCY 1 cut(s) 15
MhlI GDGCHC 1 cut(s) 234
MluCI AATT 3 cut(s) 76, 238, 573
MmeI TCCRAC 1 cut(s) 345
MroXI GAANNNNTTC 1 cut(s) 456
MseI TTAA 2 cut(s) 39, 572
MslI CAYNNNNRTG 1 cut(s) 108
MspI CCGG 1 cut(s) 529
MspR9I CCNGG 1 cut(s) 512
MvaI CCWGG 1 cut(s) 512
NcoI CCATGG 1 cut(s) 300
NdeII GATC 3 cut(s) 15, 132, 601
NlaIII CATG 4 cut(s) 11, 304, 427, 436
NmuCI GTSAC 2 cut(s) 3, 166
NspV TTCGAA 1 cut(s) 81
OliI CACNNNNGTG 1 cut(s) 108
PagI TCATGA 2 cut(s) 423, 432
PcsI WCGNNNNNNNCGW 1 cut(s) 78
PdmI GAANNNNTTC 1 cut(s) 456
PfeI GAWTC 3 cut(s) 191, 462, 515
PkrI GCNGC 1 cut(s) 470
PpuMI RGGWCCY 1 cut(s) 418
Psp5II RGGWCCY 1 cut(s) 418
Psp6I CCWGG 1 cut(s) 510
PspGI CCWGG 1 cut(s) 510
PspPI GGNCC 2 cut(s) 297, 418
PspPPI RGGWCCY 1 cut(s) 418
PstI CTGCAG 2 cut(s) 337, 470
PsuI RGATCY 1 cut(s) 15
RsaI GTAC 4 cut(s) 59, 404, 480, 509
RsaNI GTAC 4 cut(s) 58, 403, 479, 508
RseI CAYNNNNRTG 1 cut(s) 108
SaqAI TTAA 2 cut(s) 39, 572
SatI GCNGC 1 cut(s) 469
Sau3AI GATC 3 cut(s) 15, 132, 601
Sau96I GGNCC 2 cut(s) 297, 418
ScaI AGTACT 1 cut(s) 59
ScrFI CCNGG 1 cut(s) 512
SduI GDGCHC 1 cut(s) 234
SfaNI GCATC 2 cut(s) 176, 307
SfcI CTRYAG 2 cut(s) 333, 466
SfuI TTCGAA 1 cut(s) 81
SinI GGWCC 2 cut(s) 297, 418
SmiMI CAYNNNNRTG 1 cut(s) 108
SmlI CTYRAG 1 cut(s) 474
SmoI CTYRAG 1 cut(s) 474
Sse9I AATT 3 cut(s) 76, 238, 573
SsiI CCGC 2 cut(s) 93, 519
SspMI CTAG 3 cut(s) 278, 294, 327
StyD4I CCNGG 1 cut(s) 510
StyI CCWWGG 1 cut(s) 300
TaaI ACNGT 2 cut(s) 107, 483
TaiI ACGT 3 cut(s) 150, 227, 408
TaqI TCGA 4 cut(s) 53, 81, 184, 460
TasI AATT 3 cut(s) 76, 238, 573
TatI WGTACW 2 cut(s) 57, 478
TfiI GAWTC 3 cut(s) 191, 462, 515
Tru1I TTAA 2 cut(s) 39, 572
Tru9I TTAA 2 cut(s) 39, 572
TscAI CASTG 2 cut(s) 112, 253
TseFI GTSAC 2 cut(s) 3, 166
TseI GCWGC 1 cut(s) 468
Tsp45I GTSAC 2 cut(s) 3, 166
TspDTI ATGAA 4 cut(s) 195, 287, 387, 421
TspRI CASTG 2 cut(s) 112, 253
VpaK11BI GGWCC 2 cut(s) 297, 418
XapI RAATTY 1 cut(s) 76
XcmI CCANNNNNNNNNTGG 1 cut(s) 307
XmiI GTMKAC 1 cut(s) 150
XmnI GAANNNNTTC 1 cut(s) 456
XspI CTAG 3 cut(s) 278, 294, 327
ZrmI AGTACT 1 cut(s) 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.