Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0012725

Physical Location & Seq

Genomic Coordinates Forward (+)

27143094 .. 27143997

Gene Structure 904 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g24140.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 339 bp

ATGGCTAAAGCAGCTCTCTCTGTTCTGCTCCTGCTCTTGTCCTTCACTTCAGAAACTTTGCTCATGGTAAATGGACAGAAAACTTGGTGTGTGGCCAGGCCTTCGTCCGACCAAGCAACGCTCTTATCGAATCTAAATTACGCGTGCGCGCATGTAGATTGTCAGATTCTTCGAAAAGGATGCCCGTGCTCATCGCCGGATAATCTCATGAACCGTGCCTCCATAGCCATGAACATGTATTTCCAATCCAAGGGAAAGAACCAGTGGAATTGTGACTTCAGAGGCTCTGCTCTTATTGTCGTGACTGATCCAAGTTATGGTGACTGCATTTATGCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Protein Analysis

113

Amino Acids

12.28

Weight (kDa)

8.19

Isoelectric Point (pI)

33.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012725)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G78520 AT2G43670
fragaria_vesca	FvH4_3g17340
malus_domestica	MD11G1273700.v1.1
prunus_persica	Prupe.4G153400_v2.0.a1
pyrus_communis	pycom11g24140
rosa_chinensis	RchiOBHm_Chr5g0028861
rosa_laevigata	RLG00000033120
rosa_multiflora	Rmu_sc0005178.1_g000012
rosa_roxburghii	Rroxscaffold_1G00051020
rosa_rugosa	Rorug05G0110800 Rorug05G0110900 Rorug05G0111000
rosa_samantha	Rh5AG203300 Rh5BG201400 Rh5CG222400 Rh5DG205000
rosa_wichuraiana	Rw5G018390

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	317
AccII	CGCG	2 cut(s)	143, 149
AclWI	GGATC	1 cut(s)	302
AcoI	YGGCCR	1 cut(s)	93
AcuI	CTGAAG	2 cut(s)	33, 262
AfiI	CCNNNNNNNGG	2 cut(s)	250, 317
AflIII	ACRYGT	2 cut(s)	141, 234
AjnI	CCWGG	1 cut(s)	95
AloI	GAACNNNNNNTCC	2 cut(s)	203, 235
AluBI	AGCT	1 cut(s)	14
AluI	AGCT	1 cut(s)	14
Alw21I	GWGCWC	1 cut(s)	191
AlwI	GGATC	1 cut(s)	302
AoxI	GGCC	2 cut(s)	93, 98
ApeKI	GCWGC	1 cut(s)	11
AspLEI	GCGC	2 cut(s)	149, 151
AsuHPI	GGTGA	1 cut(s)	332
AsuII	TTCGAA	1 cut(s)	172
BalI	TGGCCA	1 cut(s)	95
Bbv12I	GWGCWC	1 cut(s)	191
BbvI	GCAGC	1 cut(s)	23
BcgI	CGANNNNNNTGC	2 cut(s)	162, 196
BciT130I	CCWGG	1 cut(s)	97
BisI	GCNGC	1 cut(s)	12
BlsI	GCNGC	1 cut(s)	13
Bme1390I	CCNGG	1 cut(s)	97
BmrFI	CCNGG	1 cut(s)	97
BmsI	GCATC	1 cut(s)	170
Bpu14I	TTCGAA	1 cut(s)	172
BsaJI	CCNNGG	1 cut(s)	249
BsaXI	ACNNNNNCTCC	2 cut(s)	203, 233
Bsc4I	CCNNNNNNNGG	2 cut(s)	250, 317
Bse1I	ACTGG	1 cut(s)	262
BseBI	CCWGG	1 cut(s)	97
BseDI	CCNNGG	1 cut(s)	249
BseGI	GGATG	1 cut(s)	185
BseLI	CCNNNNNNNGG	2 cut(s)	250, 317
BseNI	ACTGG	1 cut(s)	262
BsePI	GCGCGC	1 cut(s)	147
BseXI	GCAGC	1 cut(s)	23
Bsh1236I	CGCG	2 cut(s)	143, 149
BshFI	GGCC	2 cut(s)	95, 100
BsiHKAI	GWGCWC	1 cut(s)	191
BsiSI	CCGG	1 cut(s)	197
BslI	CCNNNNNNNGG	2 cut(s)	250, 317
BsnI	GGCC	2 cut(s)	95, 100
Bsp119I	TTCGAA	1 cut(s)	172
Bsp1286I	GDGCHC	1 cut(s)	191
Bsp143I	GATC	1 cut(s)	307
BspANI	GGCC	2 cut(s)	95, 100
BspFNI	CGCG	2 cut(s)	143, 149
BspHI	TCATGA	1 cut(s)	207
BspPI	GGATC	1 cut(s)	302
BspT104I	TTCGAA	1 cut(s)	172
BsrI	ACTGG	1 cut(s)	262
BssECI	CCNNGG	1 cut(s)	249
BssHII	GCGCGC	1 cut(s)	147
BssMI	GATC	1 cut(s)	307
BssT1I	CCWWGG	1 cut(s)	249
Bst2UI	CCWGG	1 cut(s)	97
Bst4CI	ACNGT	1 cut(s)	215
BstBI	TTCGAA	1 cut(s)	172
BstC8I	GCNNGC	2 cut(s)	145, 149
BstF5I	GGATG	1 cut(s)	185
BstFNI	CGCG	2 cut(s)	143, 149
BstHHI	GCGC	2 cut(s)	149, 151
BstKTI	GATC	1 cut(s)	310
BstMBI	GATC	1 cut(s)	307
BstMWI	GCNNNNNNNGC	2 cut(s)	11, 224
BstNI	CCWGG	1 cut(s)	97
BstNSI	RCATGY	2 cut(s)	155, 238
BstSCI	CCNGG	1 cut(s)	95
BstUI	CGCG	2 cut(s)	143, 149
BstV1I	GCAGC	1 cut(s)	23
BsuRI	GGCC	2 cut(s)	95, 100
BtgZI	GCGATG	1 cut(s)	177
BtsCI	GGATG	1 cut(s)	185
BtsIMutI	CAGTG	1 cut(s)	269
Cac8I	GCNNGC	2 cut(s)	145, 149
CciI	TCATGA	1 cut(s)	207
CfoI	GCGC	2 cut(s)	149, 151
CviAII	CATG	5 cut(s)	64, 152, 208, 229, 235
CviJI	RGCY	6 cut(s)	5, 14, 95, 100, 227, 285
CviKI_1	RGCY	6 cut(s)	5, 14, 95, 100, 227, 285
DpnI	GATC	1 cut(s)	309
DpnII	GATC	1 cut(s)	307
EaeI	YGGCCR	1 cut(s)	93
Eco130I	CCWWGG	1 cut(s)	249
Eco147I	AGGCCT	1 cut(s)	100
Eco57I	CTGAAG	2 cut(s)	33, 262
EcoRII	CCWGG	1 cut(s)	95
EcoT14I	CCWWGG	1 cut(s)	249
EcoT22I	ATGCAT	1 cut(s)	337
ErhI	CCWWGG	1 cut(s)	249
FaeI	CATG	5 cut(s)	67, 155, 211, 232, 238
FaiI	YATR	9 cut(s)	65, 153, 209, 224, 230, 236, 318, 333, 337
FatI	CATG	5 cut(s)	63, 151, 207, 228, 234
Fnu4HI	GCNGC	1 cut(s)	12
FokI	GGATG	1 cut(s)	192
Fsp4HI	GCNGC	1 cut(s)	12
GlaI	GCGC	2 cut(s)	148, 150
GluI	GCNGC	1 cut(s)	12
HaeIII	GGCC	2 cut(s)	95, 100
HapII	CCGG	1 cut(s)	197
HhaI	GCGC	2 cut(s)	149, 151
Hin1II	CATG	5 cut(s)	67, 155, 211, 232, 238
Hin6I	GCGC	2 cut(s)	147, 149
HinP1I	GCGC	2 cut(s)	147, 149
HinfI	GANTC	2 cut(s)	130, 166
HpaII	CCGG	1 cut(s)	197
HphI	GGTGA	1 cut(s)	332
Hpy188I	TCNGA	4 cut(s)	52, 109, 165, 281
Hpy188III	TCNNGA	2 cut(s)	208, 301
HpyAV	CCTTC	2 cut(s)	52, 111
HpyCH4III	ACNGT	1 cut(s)	215
HpyCH4V	TGCA	2 cut(s)	327, 335
HpyF10VI	GCNNNNNNNGC	2 cut(s)	11, 224
Hsp92II	CATG	5 cut(s)	67, 155, 211, 232, 238
HspAI	GCGC	2 cut(s)	147, 149
Kzo9I	GATC	1 cut(s)	307
LmnI	GCTCC	1 cut(s)	33
LpnPI	CCDG	5 cut(s)	44, 82, 109, 210, 275
Lsp1109I	GCAGC	1 cut(s)	23
LweI	GCATC	1 cut(s)	170
MaeIII	GTNAC	3 cut(s)	272, 301, 320
MalI	GATC	1 cut(s)	309
MboI	GATC	1 cut(s)	307
MboII	GAAGA	1 cut(s)	161
MhlI	GDGCHC	1 cut(s)	191
MlsI	TGGCCA	1 cut(s)	95
MluCI	AATT	2 cut(s)	136, 268
MluI	ACGCGT	1 cut(s)	141
MluNI	TGGCCA	1 cut(s)	95
MmeI	TCCRAC	1 cut(s)	132
MnlI	CCTC	2 cut(s)	229, 275
Mox20I	TGGCCA	1 cut(s)	95
Mph1103I	ATGCAT	1 cut(s)	337
MscI	TGGCCA	1 cut(s)	95
MslI	CAYNNNNRTG	2 cut(s)	227, 233
Msp20I	TGGCCA	1 cut(s)	95
MspI	CCGG	1 cut(s)	197
MspR9I	CCNGG	1 cut(s)	97
MvaI	CCWGG	1 cut(s)	97
MvnI	CGCG	2 cut(s)	143, 149
MwoI	GCNNNNNNNGC	2 cut(s)	11, 224
NdeII	GATC	1 cut(s)	307
NlaIII	CATG	5 cut(s)	67, 155, 211, 232, 238
NmuCI	GTSAC	3 cut(s)	272, 301, 320
NsiI	ATGCAT	1 cut(s)	337
NspI	RCATGY	2 cut(s)	155, 238
NspV	TTCGAA	1 cut(s)	172
PagI	TCATGA	1 cut(s)	207
PauI	GCGCGC	1 cut(s)	147
PceI	AGGCCT	1 cut(s)	100
PciI	ACATGT	1 cut(s)	234
PcsI	WCGNNNNNNNCGW	1 cut(s)	125
PfeI	GAWTC	2 cut(s)	130, 166
PflMI	CCANNNNNTGG	1 cut(s)	317
PkrI	GCNGC	1 cut(s)	13
PscI	ACATGT	1 cut(s)	234
Psp6I	CCWGG	1 cut(s)	95
PspGI	CCWGG	1 cut(s)	95
PteI	GCGCGC	1 cut(s)	147
RseI	CAYNNNNRTG	2 cut(s)	227, 233
SatI	GCNGC	1 cut(s)	12
Sau3AI	GATC	1 cut(s)	307
ScrFI	CCNGG	1 cut(s)	97
SduI	GDGCHC	1 cut(s)	191
SetI	ASST	1 cut(s)	16
SfaNI	GCATC	1 cut(s)	170
SfuI	TTCGAA	1 cut(s)	172
SmiMI	CAYNNNNRTG	2 cut(s)	227, 233
Sse9I	AATT	2 cut(s)	136, 268
SseBI	AGGCCT	1 cut(s)	100
StuI	AGGCCT	1 cut(s)	100
StyD4I	CCNGG	1 cut(s)	95
StyI	CCWWGG	1 cut(s)	249
TaaI	ACNGT	1 cut(s)	215
TaqI	TCGA	2 cut(s)	128, 172
TasI	AATT	2 cut(s)	136, 268
TfiI	GAWTC	2 cut(s)	130, 166
TscAI	CASTG	1 cut(s)	269
TseFI	GTSAC	3 cut(s)	272, 301, 320
TseI	GCWGC	1 cut(s)	11
Tsp45I	GTSAC	3 cut(s)	272, 301, 320
TspDTI	ATGAA	2 cut(s)	224, 245
TspRI	CASTG	1 cut(s)	269
Van91I	CCANNNNNTGG	1 cut(s)	317
XceI	RCATGY	2 cut(s)	155, 238
Zsp2I	ATGCAT	1 cut(s)	337

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.