Rh5CG222400

Glucan endo-1,3-beta-glucosidase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0012725
Physical Location & Seq
Reverse (-)
22661560 .. 22662869
1310 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG222400.1

Sequence Viewer

Length: 288 bp
ATGGTAAATGGGCAGCAGAAAACTTGGTGTGTGGCCAAACCTTCAACAGACCAAGCAACGCTTTTAGCGAATCTGAATTTCGCATGCTCTCACGTAGATTGTCGGATTCTTCAAGGTGGATGTCCATGCTTCTCTCCGGATAATCTCATGAATCATGCCTCTATAGCCATGAATCTATACTACCAAGCTAAGGGAAGGAACCAGTGGAATTGTGATTTTAGGTGCTCTGGTCTTATTGTCATGACTAATCCAAGTAAGTCACATTTTACAGCAAGCCAATTACTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
X8

Protein Analysis

95

Amino Acids

10.53

Weight (kDa)

8.55

Isoelectric Point (pI)

25.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
X8 PF07983 8 - 75 3.4e-19 X8 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012725)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78520 AT2G43670
fragaria_vesca FvH4_3g17340
malus_domestica MD11G1273700.v1.1
prunus_persica Prupe.4G153400_v2.0.a1
pyrus_communis pycom11g24140
rosa_chinensis RchiOBHm_Chr5g0028861
rosa_laevigata RLG00000033120
rosa_multiflora Rmu_sc0005178.1_g000012
rosa_roxburghii Rroxscaffold_1G00051020
rosa_rugosa Rorug05G0110800 Rorug05G0110900 Rorug05G0111000
rosa_samantha Rh5AG203300 Rh5BG201400 Rh5CG222400 Rh5DG205000
rosa_wichuraiana Rw5G018390

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 136
AcoI YGGCCR 1 cut(s) 33
AcsI RAATTY 1 cut(s) 76
AfiI CCNNNNNNNGG 1 cut(s) 190
AgsI TTSAA 2 cut(s) 45, 113
AluBI AGCT 1 cut(s) 188
AluI AGCT 1 cut(s) 188
Alw21I GWGCWC 1 cut(s) 227
Aor13HI TCCGGA 1 cut(s) 136
AoxI GGCC 1 cut(s) 33
ApeKI GCWGC 1 cut(s) 13
ApoI RAATTY 1 cut(s) 76
BalI TGGCCA 1 cut(s) 35
Bbv12I GWGCWC 1 cut(s) 227
BbvI GCAGC 1 cut(s) 25
BfmI CTRYAG 1 cut(s) 162
BisI GCNGC 1 cut(s) 14
BlsI GCNGC 1 cut(s) 15
BmiI GGNNCC 1 cut(s) 200
Bpu10I CCTNAGC 1 cut(s) 189
BsaAI YACGTR 1 cut(s) 94
BsaWI WCCGGW 1 cut(s) 136
Bsc4I CCNNNNNNNGG 1 cut(s) 190
Bse1I ACTGG 1 cut(s) 202
BseAI TCCGGA 1 cut(s) 136
BseGI GGATG 1 cut(s) 125
BseLI CCNNNNNNNGG 1 cut(s) 190
BseNI ACTGG 1 cut(s) 202
BseXI GCAGC 1 cut(s) 25
BshFI GGCC 1 cut(s) 35
BsiHKAI GWGCWC 1 cut(s) 227
BsiSI CCGG 1 cut(s) 137
BslI CCNNNNNNNGG 1 cut(s) 190
BsnI GGCC 1 cut(s) 35
Bsp1286I GDGCHC 1 cut(s) 227
Bsp13I TCCGGA 1 cut(s) 136
BspANI GGCC 1 cut(s) 35
BspEI TCCGGA 1 cut(s) 136
BspHI TCATGA 2 cut(s) 147, 240
BspLI GGNNCC 1 cut(s) 200
BsrI ACTGG 1 cut(s) 202
BstBAI YACGTR 1 cut(s) 94
BstC8I GCNNGC 2 cut(s) 85, 274
BstDEI CTNAG 1 cut(s) 189
BstF5I GGATG 1 cut(s) 125
BstMWI GCNNNNNNNGC 1 cut(s) 164
BstNSI RCATGY 1 cut(s) 87
BstSFI CTRYAG 1 cut(s) 162
BstV1I GCAGC 1 cut(s) 25
BsuRI GGCC 1 cut(s) 35
BtsCI GGATG 1 cut(s) 125
BtsIMutI CAGTG 1 cut(s) 209
Cac8I GCNNGC 2 cut(s) 85, 274
CciI TCATGA 2 cut(s) 147, 240
CviAII CATG 6 cut(s) 84, 126, 148, 155, 169, 241
CviJI RGCY 4 cut(s) 35, 167, 188, 276
CviKI_1 RGCY 4 cut(s) 35, 167, 188, 276
DdeI CTNAG 1 cut(s) 189
EaeI YGGCCR 1 cut(s) 33
FaeI CATG 6 cut(s) 87, 129, 151, 158, 172, 244
FaiI YATR 9 cut(s) 85, 127, 149, 156, 164, 170, 178, 242, 286
FalI AAGNNNNNCTT 2 cut(s) 45, 77
FatI CATG 6 cut(s) 83, 125, 147, 154, 168, 240
Fnu4HI GCNGC 1 cut(s) 14
FokI GGATG 1 cut(s) 132
Fsp4HI GCNGC 1 cut(s) 14
GluI GCNGC 1 cut(s) 14
HaeIII GGCC 1 cut(s) 35
HapII CCGG 1 cut(s) 137
Hin1II CATG 6 cut(s) 87, 129, 151, 158, 172, 244
HinfI GANTC 4 cut(s) 70, 106, 151, 172
HpaII CCGG 1 cut(s) 137
Hpy188I TCNGA 2 cut(s) 75, 105
Hpy188III TCNNGA 3 cut(s) 137, 148, 241
HpyAV CCTTC 2 cut(s) 51, 189
HpyCH4IV ACGT 1 cut(s) 93
HpyF10VI GCNNNNNNNGC 1 cut(s) 164
HpyF3I CTNAG 1 cut(s) 189
HpySE526I ACGT 1 cut(s) 93
Hsp92II CATG 6 cut(s) 87, 129, 151, 158, 172, 244
Kpn2I TCCGGA 1 cut(s) 136
LpnPI CCDG 3 cut(s) 150, 213, 215
Lsp1109I GCAGC 1 cut(s) 25
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 1 cut(s) 258
MboII GAAGA 1 cut(s) 101
MhlI GDGCHC 1 cut(s) 227
MlsI TGGCCA 1 cut(s) 35
MluCI AATT 3 cut(s) 76, 208, 278
MluNI TGGCCA 1 cut(s) 35
MmeI TCCRAC 1 cut(s) 83
MnlI CCTC 1 cut(s) 169
Mox20I TGGCCA 1 cut(s) 35
MroI TCCGGA 1 cut(s) 136
MscI TGGCCA 1 cut(s) 35
Msp20I TGGCCA 1 cut(s) 35
MspI CCGG 1 cut(s) 137
MwoI GCNNNNNNNGC 1 cut(s) 164
NlaIII CATG 6 cut(s) 87, 129, 151, 158, 172, 244
NlaIV GGNNCC 1 cut(s) 200
NmuCI GTSAC 1 cut(s) 258
NspI RCATGY 1 cut(s) 87
PaeI GCATGC 1 cut(s) 87
PagI TCATGA 2 cut(s) 147, 240
PcsI WCGNNNNNNNCGW 1 cut(s) 65
PfeI GAWTC 4 cut(s) 70, 106, 151, 172
PkrI GCNGC 1 cut(s) 15
Ppu21I YACGTR 1 cut(s) 94
PspN4I GGNNCC 1 cut(s) 200
SatI GCNGC 1 cut(s) 14
SduI GDGCHC 1 cut(s) 227
SetI ASST 5 cut(s) 43, 96, 118, 190, 224
SfcI CTRYAG 1 cut(s) 162
SphI GCATGC 1 cut(s) 87
Sse9I AATT 3 cut(s) 76, 208, 278
TaiI ACGT 1 cut(s) 96
TasI AATT 3 cut(s) 76, 208, 278
TfiI GAWTC 4 cut(s) 70, 106, 151, 172
TscAI CASTG 1 cut(s) 209
TseFI GTSAC 1 cut(s) 258
TseI GCWGC 1 cut(s) 13
Tsp45I GTSAC 1 cut(s) 258
TspDTI ATGAA 2 cut(s) 164, 185
TspRI CASTG 1 cut(s) 209
XapI RAATTY 1 cut(s) 76
XceI RCATGY 1 cut(s) 87
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.