AT1G78530
ERF Family

belongs to the protein kinase superfamily

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
Physical Location & Seq
Reverse (-)
29539086 .. 29540865
1780 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G78530.1

Sequence Viewer

Length: 1068 bp
ATGGCTAATGCAAAGGAAACAACGTTTTATATAACAATCTCTGTGGTTGCTTTTGTCATTGGCAAAATCGTAATCGCTCTTCTTTTCTACAAGAGATGGAAGAGAAAGCACACAATTCATGAAAATGGATTTCCAGTCAAAGGAGGAGGAAAAATGGTGATGTTTAGATCTCAATTACTTAACTCTGTTTCCTCCGACATGTTTATGAAGAAGACACATAAACTAAGCAACAAAGACATTCTTGGTTCTGGAGGATTTGGAACTGTGTACAGATTAGTCATTGATGATTCAACTACTTTTGCTGTGAAGAGGCTAAACAGAGGAACTTCTGAGAGAGACAGAGGGTTTCATAGAGAGTTAGAAGCAATGGCTGATATAAAACACAGAAACATTGTAACTCTTCATGGCTACTTTACTTCTCCACATTACAATCTTCTCATCTATGAGCTCATGCCTAATGGGAGCTTGGATTCTTTTCTACACGGAAGAAAAGCTTTGGATTGGGCGTCGAGATATAGAATCGCAGTAGGAGCGGCTAGAGGGATTTCGTACCTTCACCATGATTGCATTCCTCACATTATCCATAGAGACATCAAATCTAGCAACATACTTCTTGATCACAACATGGAAGCTAGGGTTTCTGATTTCGGTTTAGCCACTTTGATGGAGCCAGACAAGACTCATGTTTCGACTTTTGTGGCTGGAACATTCGGATATTTAGCTCCTGAGTATTTCGATACTGGAAAAGCGACAATGAAAGGAGATGTTTACAGTTTCGGAGTTGTTCTGTTGGAGCTTTTAACTGGAAGAAAACCAACAGATGACGAGTTTTTCGAAGAAGGAACAAAGCTTGTTACTTGGGTTAAAGGAGTGGTAAGAGACCAAAGAGAAGAGGTGGTGATAGATAACCGATTAAGAGGATCATCGGTTCAAGAGAATGAAGAGATGAACGATGTGTTTGGTATAGCGATGATGTGTCTTGAACCCGAACCAGCAATTAGACCAGCCATGACTGAGGTTGTCAAATTGCTCGAATACATCAAACTTTCCACACGTTCCTCTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

355

Amino Acids

40.23

Weight (kDa)

8.83

Isoelectric Point (pI)

35.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Pkinase PF00069 77 - 342 1.7e-47 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 78 - 343 3.5e-47 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0013875)

Species Orthologous Gene IDs
arabidopsis_thaliana AT1G78530 AT1G78530
fragaria_vesca FvH4_3g17360
malus_domestica MD11G1273500.v1.1
prunus_persica Prupe.4G153600_v2.0.a1
pyrus_communis pycom11g24120
rosa_chinensis RchiOBHm_Chr5g0028881
rosa_laevigata RLG00000033122
rosa_multiflora Rmu_co8260251.1_g000001 Rmu_sc0000638.1_g000038
rosa_roxburghii Rroxscaffold_1G00051000
rosa_rugosa Rorug05G0111200
rosa_samantha Rh5AG203500 Rh5BG201600 Rh5CG222600 Rh5DG205200
rosa_wichuraiana Rw5G018410

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 533
AciI CCGC 1 cut(s) 533
AclI AACGTT 1 cut(s) 23
AclWI GGATC 1 cut(s) 928
AcyI GRCGYC 1 cut(s) 506
AfaI GTAC 2 cut(s) 269, 551
AfiI CCNNNNNNNGG 1 cut(s) 140
AflIII ACRYGT 2 cut(s) 198, 1052
AgsI TTSAA 3 cut(s) 291, 932, 983
AloI GAACNNNNNNTCC 2 cut(s) 912, 944
AluBI AGCT 7 cut(s) 448, 465, 494, 632, 722, 796, 850
AluI AGCT 7 cut(s) 448, 465, 494, 632, 722, 796, 850
Alw21I GWGCWC 1 cut(s) 450
Alw26I GTCTC 3 cut(s) 330, 582, 873
AlwI GGATC 1 cut(s) 928
ArsI GACNNNNNNTTYG 4 cut(s) 670, 702, 815, 847
AsuHPI GGTGA 3 cut(s) 169, 548, 910
AsuII TTCGAA 1 cut(s) 834
BanII GRGCYC 1 cut(s) 450
BarI GAAGNNNNNNTAC 2 cut(s) 63, 95
BbsI GAAGAC 1 cut(s) 218
Bbv12I GWGCWC 1 cut(s) 450
BccI CCATC 2 cut(s) 90, 658
BclI TGATCA 1 cut(s) 616
BcoDI GTCTC 3 cut(s) 330, 582, 873
BfaI CTAG 3 cut(s) 537, 600, 633
BglII AGATCT 1 cut(s) 167
BisI GCNGC 1 cut(s) 534
BlsI GCNGC 1 cut(s) 535
BmiI GGNNCC 1 cut(s) 669
BpiI GAAGAC 1 cut(s) 218
BpmI CTGGAG 1 cut(s) 270
Bpu14I TTCGAA 1 cut(s) 834
BsaHI GRCGYC 1 cut(s) 506
BsaI GGTCTC 1 cut(s) 873
Bsc4I CCNNNNNNNGG 1 cut(s) 140
Bse1I ACTGG 3 cut(s) 134, 745, 808
Bse3DI GCAATG 1 cut(s) 372
BseLI CCNNNNNNNGG 1 cut(s) 140
BseMI GCAATG 1 cut(s) 372
BseMII CTCAG 3 cut(s) 321, 717, 1005
BseNI ACTGG 3 cut(s) 134, 745, 808
BseRI GAGGAG 1 cut(s) 159
BsiHKAI GWGCWC 1 cut(s) 450
BslI CCNNNNNNNGG 1 cut(s) 140
BsmAI GTCTC 3 cut(s) 330, 582, 873
BsmI GAATGC 1 cut(s) 567
Bso31I GGTCTC 1 cut(s) 873
Bsp119I TTCGAA 1 cut(s) 834
Bsp1286I GDGCHC 1 cut(s) 450
Bsp1407I TGTACA 1 cut(s) 267
Bsp143I GATC 3 cut(s) 167, 616, 920
BspACI CCGC 1 cut(s) 533
BspCNI CTCAG 3 cut(s) 322, 718, 1006
BspHI TCATGA 1 cut(s) 118
BspLI GGNNCC 1 cut(s) 669
BspPI GGATC 1 cut(s) 928
BspQI GCTCTTC 1 cut(s) 84
BspT104I TTCGAA 1 cut(s) 834
BspTNI GGTCTC 1 cut(s) 873
BsrBI CCGCTC 1 cut(s) 533
BsrDI GCAATG 1 cut(s) 372
BsrGI TGTACA 1 cut(s) 267
BsrI ACTGG 3 cut(s) 134, 745, 808
BssMI GATC 3 cut(s) 167, 616, 920
BssNI GRCGYC 1 cut(s) 506
Bst4CI ACNGT 2 cut(s) 265, 773
Bst6I CTCTTC 6 cut(s) 84, 95, 302, 405, 885, 936
BstACI GRCGYC 1 cut(s) 506
BstAUI TGTACA 1 cut(s) 267
BstBI TTCGAA 1 cut(s) 834
BstDEI CTNAG 4 cut(s) 224, 330, 726, 1014
BstKTI GATC 3 cut(s) 170, 619, 923
BstMAI GTCTC 3 cut(s) 330, 582, 873
BstMBI GATC 3 cut(s) 167, 616, 920
BstMWI GCNNNNNNNGC 1 cut(s) 530
BstNSI RCATGY 1 cut(s) 202
BstV2I GAAGAC 1 cut(s) 218
BstX2I RGATCY 1 cut(s) 167
BstXI CCANNNNNNTGG 1 cut(s) 664
BstYI RGATCY 1 cut(s) 167
BtgZI GCGATG 1 cut(s) 983
CciI TCATGA 1 cut(s) 118
CseI GACGC 1 cut(s) 495
Csp6I GTAC 2 cut(s) 268, 550
CspCI CAANNNNNGTGG 2 cut(s) 24, 59
CviAII CATG 8 cut(s) 119, 199, 404, 451, 560, 625, 683, 1009
CviQI GTAC 2 cut(s) 268, 550
DdeI CTNAG 4 cut(s) 224, 330, 726, 1014
DpnI GATC 3 cut(s) 169, 618, 922
DpnII GATC 3 cut(s) 167, 616, 920
Eam1104I CTCTTC 6 cut(s) 84, 95, 302, 405, 885, 936
EarI CTCTTC 6 cut(s) 84, 95, 302, 405, 885, 936
Ecl136II GAGCTC 1 cut(s) 448
Eco24I GRGCYC 1 cut(s) 450
Eco31I GGTCTC 1 cut(s) 873
Eco53kI GAGCTC 1 cut(s) 448
EcoICRI GAGCTC 1 cut(s) 448
EcoT38I GRGCYC 1 cut(s) 450
FaeI CATG 8 cut(s) 122, 202, 407, 454, 563, 628, 686, 1012
FalI AAGNNNNNCTT 4 cut(s) 225, 257, 478, 510
FatI CATG 8 cut(s) 118, 198, 403, 450, 559, 624, 682, 1008
FbaI TGATCA 1 cut(s) 616
Fnu4HI GCNGC 1 cut(s) 534
FriOI GRGCYC 1 cut(s) 450
Fsp4HI GCNGC 1 cut(s) 534
FspBI CTAG 3 cut(s) 537, 600, 633
GluI GCNGC 1 cut(s) 534
GsuI CTGGAG 1 cut(s) 270
HgaI GACGC 1 cut(s) 495
Hin1I GRCGYC 1 cut(s) 506
Hin1II CATG 8 cut(s) 122, 202, 407, 454, 563, 628, 686, 1012
HindIII AAGCTT 2 cut(s) 492, 848
HinfI GANTC 4 cut(s) 287, 470, 519, 679
HphI GGTGA 3 cut(s) 169, 548, 910
Hpy166II GTNNAC 2 cut(s) 268, 769
Hpy188I TCNGA 5 cut(s) 196, 331, 643, 713, 779
Hpy188III TCNNGA 7 cut(s) 119, 249, 510, 614, 725, 932, 980
Hpy8I GTNNAC 2 cut(s) 268, 769
Hpy99I CGWCG 1 cut(s) 511
HpyAV CCTTC 2 cut(s) 563, 833
HpyCH4III ACNGT 2 cut(s) 265, 773
HpyCH4IV ACGT 2 cut(s) 23, 1054
HpyCH4V TGCA 2 cut(s) 11, 567
HpyF10VI GCNNNNNNNGC 1 cut(s) 530
HpyF3I CTNAG 4 cut(s) 224, 330, 726, 1014
HpySE526I ACGT 2 cut(s) 23, 1054
Hsp92I GRCGYC 1 cut(s) 506
Hsp92II CATG 8 cut(s) 122, 202, 407, 454, 563, 628, 686, 1012
Ksp22I TGATCA 1 cut(s) 616
Kzo9I GATC 3 cut(s) 167, 616, 920
LguI GCTCTTC 1 cut(s) 84
LmnI GCTCC 5 cut(s) 462, 530, 667, 727, 793
LpnPI CCDG 9 cut(s) 147, 234, 684, 687, 726, 738, 789, 1005, 1017
MaeI CTAG 3 cut(s) 537, 600, 633
MaeII ACGT 2 cut(s) 23, 1054
MaeIII GTNAC 2 cut(s) 394, 853
MalI GATC 3 cut(s) 169, 618, 922
MbiI CCGCTC 1 cut(s) 533
MboI GATC 3 cut(s) 167, 616, 920
MflI RGATCY 1 cut(s) 167
MhlI GDGCHC 1 cut(s) 450
MluCI AATT 4 cut(s) 114, 173, 996, 1025
MlyI GAGTC 1 cut(s) 673
MmeI TCCRAC 2 cut(s) 219, 771
MseI TTAA 4 cut(s) 180, 800, 864, 914
MslI CAYNNNNRTG 3 cut(s) 123, 203, 662
Mva1269I GAATGC 1 cut(s) 567
MwoI GCNNNNNNNGC 1 cut(s) 530
NdeII GATC 3 cut(s) 167, 616, 920
NlaIII CATG 8 cut(s) 122, 202, 407, 454, 563, 628, 686, 1012
NlaIV GGNNCC 1 cut(s) 669
NspI RCATGY 1 cut(s) 202
NspV TTCGAA 1 cut(s) 834
PagI TCATGA 1 cut(s) 118
PciI ACATGT 1 cut(s) 198
PciSI GCTCTTC 1 cut(s) 84
PcsI WCGNNNNNNNCGW 1 cut(s) 831
PctI GAATGC 1 cut(s) 567
PfeI GAWTC 3 cut(s) 287, 470, 519
PkrI GCNGC 1 cut(s) 535
PleI GAGTC 1 cut(s) 673
PpsI GAGTC 1 cut(s) 673
PscI ACATGT 1 cut(s) 198
Psp124BI GAGCTC 1 cut(s) 450
Psp1406I AACGTT 1 cut(s) 23
PspN4I GGNNCC 1 cut(s) 669
PsuI RGATCY 1 cut(s) 167
RsaI GTAC 2 cut(s) 269, 551
RsaNI GTAC 2 cut(s) 268, 550
RseI CAYNNNNRTG 3 cut(s) 123, 203, 662
SacI GAGCTC 1 cut(s) 450
SapI GCTCTTC 1 cut(s) 84
SaqAI TTAA 4 cut(s) 180, 800, 864, 914
SatI GCNGC 1 cut(s) 534
Sau3AI GATC 3 cut(s) 167, 616, 920
SchI GAGTC 1 cut(s) 673
SduI GDGCHC 1 cut(s) 450
SfuI TTCGAA 1 cut(s) 834
SmiMI CAYNNNNRTG 3 cut(s) 123, 203, 662
Sse9I AATT 4 cut(s) 114, 173, 996, 1025
SsiI CCGC 1 cut(s) 533
SspMI CTAG 3 cut(s) 537, 600, 633
SstI GAGCTC 1 cut(s) 450
TaaI ACNGT 2 cut(s) 265, 773
TaiI ACGT 2 cut(s) 26, 1057
TaqI TCGA 5 cut(s) 509, 689, 735, 834, 1032
TasI AATT 4 cut(s) 114, 173, 996, 1025
TatI WGTACW 1 cut(s) 267
TauI GCSGC 1 cut(s) 536
TfiI GAWTC 3 cut(s) 287, 470, 519
Tru1I TTAA 4 cut(s) 180, 800, 864, 914
Tru9I TTAA 4 cut(s) 180, 800, 864, 914
TspDTI ATGAA 8 cut(s) 107, 135, 221, 338, 392, 770, 954, 962
TspGWI ACGGA 1 cut(s) 498
XceI RCATGY 1 cut(s) 202
XspI CTAG 3 cut(s) 537, 600, 633
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.